Wall clock time and date at job start Mon Mar 30 2020 01:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30184 * 125.09237 * 2 1 4 4 C 1.34885 * 109.73573 * 180.02562 * 3 2 1 5 5 C 1.46285 * 126.49592 * 179.97438 * 4 3 2 6 6 O 1.21772 * 119.99961 * 179.97438 * 5 4 3 7 7 N 1.34778 * 120.00081 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99840 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46658 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46584 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00422 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99713 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99884 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99930 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47091 * 59.99846 * 14 12 10 16 16 H 1.48494 * 109.46804 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46998 * 300.00119 * 14 12 10 18 18 C 1.40144 * 107.00425 * 359.97438 * 4 3 2 19 19 C 1.40185 * 133.57936 * 179.97438 * 18 4 3 20 20 C 1.36331 * 119.19883 * 180.02562 * 19 18 4 21 21 C 1.40382 * 119.56340 * 0.02562 * 20 19 18 22 22 C 1.35032 * 120.43992 * 359.97438 * 21 20 19 23 23 N 1.36250 * 125.08819 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47162 * 269.96244 * 1 2 3 25 25 H 1.09007 * 109.46935 * 29.96357 * 1 2 3 26 26 H 1.08993 * 109.47416 * 149.96302 * 1 2 3 27 27 H 0.96998 * 119.99996 * 359.97438 * 7 5 4 28 28 H 1.08999 * 109.47347 * 299.99951 * 8 7 5 29 29 H 1.08995 * 109.47282 * 60.00128 * 8 7 5 30 30 H 1.09000 * 109.47003 * 299.99129 * 9 8 7 31 31 H 1.08992 * 109.47449 * 60.00502 * 9 8 7 32 32 H 0.96998 * 119.99924 * 180.02562 * 13 12 10 33 33 H 1.08006 * 120.39766 * 359.75091 * 19 18 4 34 34 H 1.08003 * 120.21416 * 180.02562 * 20 19 18 35 35 H 1.08006 * 119.78198 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.70009 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7080 -0.0006 5 6 4.7065 1.6116 -0.0013 6 8 5.8368 1.1583 -0.0013 7 7 4.5156 2.9458 -0.0009 8 6 5.6677 3.8506 -0.0010 9 6 5.1777 5.3001 -0.0012 10 6 6.3629 6.2309 -0.0020 11 1 7.3653 5.8289 -0.0019 12 6 6.1675 7.5958 -0.0028 13 7 4.9469 8.0853 -0.0023 14 14 7.6366 8.7496 -0.0030 15 1 8.4586 8.5042 -1.2152 16 1 7.1610 10.1564 -0.0033 17 1 8.4579 8.5055 1.2098 18 6 3.5964 -0.6929 -0.0003 19 6 4.6393 -1.6296 -0.0011 20 6 4.3388 -2.9594 -0.0011 21 6 2.9951 -3.3659 -0.0009 22 6 2.0032 -2.4497 -0.0001 23 7 2.2902 -1.1149 -0.0005 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8904 -0.5133 26 1 -0.3634 -0.8896 -0.5144 27 1 3.6153 3.3068 -0.0005 28 1 6.2711 3.6708 0.8887 29 1 6.2705 3.6712 -0.8912 30 1 4.5747 5.4796 -0.8912 31 1 4.5747 5.4799 0.8888 32 1 4.8094 9.0455 -0.0033 33 1 5.6684 -1.3018 -0.0062 34 1 5.1294 -3.6953 -0.0013 35 1 2.7531 -4.4185 -0.0013 36 1 0.9736 -2.7757 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784134474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:33 Heat of formation + Delta-G solvation = 11.679559 kcal Electronic energy + Delta-G solvation = -19737.221935 eV Core-core repulsion = 16607.025765 eV Total energy + Delta-G solvation = -3130.196170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.93515 -40.40169 -38.50825 -36.60389 -34.83113 -34.61274 -32.56510 -31.79884 -30.86081 -28.18043 -26.69611 -24.91583 -24.51465 -22.77397 -22.18478 -21.41967 -19.07285 -18.45181 -17.91659 -17.34364 -17.30241 -16.61052 -16.48443 -16.37078 -16.30222 -15.54333 -14.86348 -14.79781 -14.44490 -14.28623 -14.02372 -13.44577 -13.24824 -13.09136 -12.95326 -12.70049 -12.60984 -12.54392 -12.25610 -11.70979 -11.70780 -11.66502 -11.49415 -11.02870 -10.61342 -10.41186 -10.07119 -8.51955 -8.24125 -6.36105 -0.38685 0.06078 1.19911 1.40254 1.41776 1.44768 1.52724 2.25177 2.27389 2.46284 2.55712 3.09724 3.21071 3.42131 3.68352 3.76418 3.91529 4.11641 4.16371 4.45274 4.47313 4.54443 4.72076 4.73324 4.80235 4.83124 5.00291 5.12263 5.21474 5.27591 5.29161 5.46175 5.53775 5.53934 5.76391 6.11256 6.13601 6.44730 6.73661 6.77464 7.21400 7.33068 8.88156 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.003377 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.306325 B = 8290.386271 C = 9067.944821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.166 3.834 3 N -0.448 5.448 4 C -0.120 4.120 5 C 0.594 3.406 6 O -0.587 6.587 7 N -0.709 5.709 8 C 0.143 3.857 9 C 0.024 3.976 10 C -0.549 4.549 11 H 0.062 0.938 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.971 3.029 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.267 1.267 18 C 0.077 3.923 19 C -0.122 4.122 20 C -0.077 4.077 21 C -0.131 4.131 22 C 0.053 3.947 23 N -0.364 5.364 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.408 0.592 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.005 0.995 31 H 0.005 0.995 32 H 0.267 0.733 33 H 0.137 0.863 34 H 0.174 0.826 35 H 0.202 0.798 36 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 -27.987 -0.019 30.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 N -0.164 5.164 4 C -0.251 4.251 5 C 0.383 3.617 6 O -0.469 6.469 7 N -0.358 5.358 8 C 0.019 3.981 9 C -0.013 4.013 10 C -0.587 4.587 11 H 0.080 0.920 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.795 3.205 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.192 1.192 18 C -0.038 4.038 19 C -0.142 4.142 20 C -0.098 4.098 21 C -0.150 4.150 22 C -0.068 4.068 23 N -0.034 5.034 24 H 0.115 0.885 25 H 0.110 0.890 26 H 0.128 0.872 27 H 0.243 0.757 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.192 0.808 35 H 0.219 0.781 36 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -11.322 -27.207 -0.020 29.469 hybrid contribution 0.780 0.744 0.008 1.078 sum -10.542 -26.463 -0.012 28.486 Atomic orbital electron populations 1.20431 0.80215 1.05925 1.05202 1.24268 0.97331 0.78285 1.09373 1.69916 1.01449 1.29811 1.15251 1.20207 0.91350 0.90686 1.22855 1.16943 0.87027 0.81934 0.75756 1.90709 1.24635 1.77378 1.54207 1.45961 1.11065 1.05397 1.73395 1.21292 0.87303 0.89436 1.00038 1.19119 0.96511 0.89631 0.96064 1.21435 0.93379 0.91973 1.51930 0.91958 1.25967 0.99146 1.00077 0.94219 1.70081 1.22409 1.13505 1.50792 0.85406 0.78707 0.77130 0.79239 1.19147 1.20426 1.19164 1.19419 0.85967 0.93682 1.04700 1.20813 0.98036 0.92845 1.02467 1.21771 0.98956 0.94498 0.94598 1.21552 0.90788 1.02250 1.00452 1.22737 1.04449 0.78328 1.01265 1.43110 1.06492 1.08070 1.45757 0.88451 0.88970 0.87179 0.75684 0.93168 0.93173 0.97705 0.97706 0.92462 0.84478 0.80827 0.78087 0.76664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.32 71.24 0.74 0.01 16 2 C 0.17 3.99 7.94 137.83 1.09 5.09 16 3 N -0.45 -15.30 10.90 -175.25 -1.91 -17.21 16 4 C -0.12 -4.54 7.05 41.23 0.29 -4.25 16 5 C 0.59 26.33 7.77 86.33 0.67 27.00 16 6 O -0.59 -28.17 15.75 -4.58 -0.07 -28.24 16 7 N -0.71 -31.99 5.55 -467.41 -2.59 -34.58 16 8 C 0.14 7.06 5.61 86.38 0.48 7.54 16 9 C 0.02 1.36 5.09 29.85 0.15 1.51 16 10 C -0.55 -32.65 9.11 25.60 0.23 -32.42 16 11 H 0.06 3.58 7.74 -2.91 -0.02 3.55 16 12 C 0.00 0.27 5.46 84.66 0.46 0.73 16 13 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 14 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 C 0.08 2.33 6.72 39.23 0.26 2.60 16 19 C -0.12 -3.05 9.73 22.30 0.22 -2.84 16 20 C -0.08 -1.04 10.08 22.35 0.23 -0.81 16 21 C -0.13 -0.98 9.98 22.05 0.22 -0.76 16 22 C 0.05 0.54 10.77 83.22 0.90 1.44 16 23 N -0.36 -7.90 2.94 -337.19 -0.99 -8.89 16 24 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.09 1.23 8.14 -2.38 -0.02 1.22 16 26 H 0.11 0.50 7.99 -2.39 -0.02 0.48 16 27 H 0.41 17.64 8.17 -92.71 -0.76 16.89 16 28 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.14 3.96 7.17 -2.91 -0.02 3.94 16 34 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.20 -0.43 8.06 -2.91 -0.02 -0.46 16 36 H 0.22 -0.01 7.94 -2.91 -0.02 -0.03 16 Total: -1.00 -83.45 317.22 3.03 -80.41 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.34 Total: 13.26 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.95 Total: 4.83 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -5.21 Total: -117.70 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.07 Total: -28.24 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -83.45 3.03 -80.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784134474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.094 kcal (2) G-P(sol) polarization free energy of solvation -83.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds