Wall clock time and date at job start Mon Mar 30 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48494 * 109.47182 * 270.00235 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48505 * 109.47095 * 149.99711 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21563 * 120.00203 * 0.02562 * 13 12 11 15 15 C 1.47766 * 119.99701 * 180.02562 * 13 12 11 16 16 N 1.32745 * 120.06061 * 0.02562 * 15 13 12 17 17 C 1.31716 * 122.13242 * 180.02562 * 16 15 13 18 18 C 1.38300 * 121.69159 * 359.97438 * 17 16 15 19 19 C 1.39024 * 119.09437 * 0.02562 * 18 17 16 20 20 N 1.37181 * 134.65427 * 179.97438 * 19 18 17 21 21 H 0.97003 * 125.06843 * 0.04033 * 20 19 18 22 22 C 1.36726 * 109.88105 * 180.02562 * 20 19 18 23 23 C 1.34568 * 109.95273 * 0.02562 * 22 20 19 24 24 C 1.40404 * 120.05608 * 179.72885 * 15 13 12 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 33 33 H 1.08003 * 119.15173 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.45582 * 180.02562 * 18 17 16 35 35 H 1.07994 * 125.02561 * 180.02562 * 22 20 19 36 36 H 1.07997 * 126.50208 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7874 -7.5935 0.0010 15 6 2.9427 -8.4946 0.0031 16 7 4.2481 -8.2534 0.0046 17 6 5.1396 -9.2230 0.0052 18 6 4.7652 -10.5543 0.0048 19 6 3.4127 -10.8761 0.0033 20 7 2.7006 -12.0487 0.0021 21 1 3.0899 -12.9372 0.0027 22 6 1.3603 -11.7787 0.0002 23 6 1.1599 -10.4480 -0.0005 24 6 2.4760 -9.8187 0.0090 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8886 31 1 0.8535 -5.0445 0.8914 32 1 3.3856 -5.9235 0.0021 33 1 6.1900 -8.9718 0.0060 34 1 5.5131 -11.3334 0.0058 35 1 0.5780 -12.5233 -0.0007 36 1 0.2058 -9.9420 -0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826123784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:30 Heat of formation + Delta-G solvation = 19.431878 kcal Electronic energy + Delta-G solvation = -19400.711950 eV Core-core repulsion = 16270.851946 eV Total energy + Delta-G solvation = -3129.860004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.83343 -39.37082 -37.99019 -35.32757 -33.25117 -32.47651 -31.22676 -30.73257 -29.42579 -26.80854 -24.73513 -22.94403 -22.75754 -21.21427 -20.65586 -20.22848 -18.53761 -17.53289 -16.37193 -16.21739 -15.49171 -15.43172 -15.30695 -14.84360 -14.72174 -14.39028 -13.78767 -13.74922 -13.27907 -13.11660 -12.81892 -12.22590 -11.96761 -11.76399 -11.63155 -10.85625 -10.65873 -10.54932 -10.17202 -10.16966 -9.78103 -9.73968 -9.30460 -9.11780 -9.05417 -8.68008 -8.31760 -8.12959 -5.96623 -3.99147 0.31817 1.24268 2.38874 2.66377 2.88848 3.35067 3.37222 3.41292 3.44928 3.91077 4.17263 4.38853 4.49573 4.51950 4.70452 4.95493 5.08364 5.20134 5.37320 5.39225 5.70038 5.75334 5.84448 5.87221 6.19696 6.25707 6.37940 6.58325 6.61114 6.69467 6.93859 7.06786 7.08477 7.61413 7.70192 7.83374 7.93502 8.02916 8.43220 8.47760 9.07672 9.64699 11.14767 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041898 B = 0.002912 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.135264 B = 9612.758322 C =10255.143072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.704 5.704 13 C 0.564 3.436 14 O -0.534 6.534 15 C 0.141 3.859 16 N -0.473 5.473 17 C 0.100 3.900 18 C -0.164 4.164 19 C 0.118 3.882 20 N -0.590 5.590 21 H 0.418 0.582 22 C 0.044 3.956 23 C -0.165 4.165 24 C -0.112 4.112 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.409 0.591 33 H 0.164 0.836 34 H 0.135 0.865 35 H 0.178 0.822 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -27.051 0.008 28.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.354 5.354 13 C 0.348 3.652 14 O -0.410 6.410 15 C -0.004 4.004 16 N -0.186 5.186 17 C -0.053 4.053 18 C -0.187 4.187 19 C 0.003 3.997 20 N -0.194 5.194 21 H 0.256 0.744 22 C -0.081 4.081 23 C -0.190 4.190 24 C -0.120 4.120 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.244 0.756 33 H 0.182 0.818 34 H 0.152 0.848 35 H 0.195 0.805 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.742 -26.318 0.012 27.433 hybrid contribution 0.891 -0.372 -0.007 0.966 sum 8.633 -26.689 0.005 28.051 Atomic orbital electron populations 1.69970 1.06054 1.26612 1.50752 1.25030 0.94851 0.99275 0.95350 0.86583 0.79823 0.83456 0.78067 1.20688 1.21256 1.19878 1.21226 0.93046 0.90955 1.50679 0.92600 1.19033 0.93857 0.90843 0.97644 1.21891 0.99762 0.93186 1.01080 1.21713 0.91880 0.85051 1.02102 1.46084 1.11696 1.05222 1.72423 1.17751 0.87196 0.82617 0.77663 1.90754 1.15371 1.84615 1.50265 1.20814 0.90348 0.91352 0.97849 1.67586 1.01035 1.37011 1.12982 1.22371 0.99203 0.87138 0.96630 1.21174 0.92310 0.98610 1.06636 1.18277 0.93244 0.86305 1.01860 1.41644 1.05715 1.06950 1.65106 0.74435 1.22109 0.84320 0.97610 1.04092 1.21995 0.97193 0.91786 1.08047 1.19871 0.94564 0.92249 1.05365 0.92981 0.96265 0.96244 0.92613 0.92609 0.91548 0.91556 0.75555 0.81841 0.84756 0.80520 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.49 5.27 -26.73 -0.14 -2.63 16 11 C 0.11 2.15 5.67 -4.04 -0.02 2.13 16 12 N -0.70 -11.74 5.55 -61.27 -0.34 -12.08 16 13 C 0.56 9.72 7.80 -12.37 -0.10 9.62 16 14 O -0.53 -10.38 15.15 5.31 0.08 -10.30 16 15 C 0.14 2.11 6.78 -82.76 -0.56 1.55 16 16 N -0.47 -6.26 9.54 -9.67 -0.09 -6.35 16 17 C 0.10 0.98 11.13 -17.58 -0.20 0.79 16 18 C -0.16 -1.39 10.14 -39.27 -0.40 -1.79 16 19 C 0.12 1.21 7.34 -84.03 -0.62 0.59 16 20 N -0.59 -4.19 6.04 -10.59 -0.06 -4.25 16 21 H 0.42 1.41 8.96 -40.82 -0.37 1.05 16 22 C 0.04 0.34 11.82 -16.67 -0.20 0.14 16 23 C -0.16 -1.94 10.26 -37.82 -0.39 -2.33 16 24 C -0.11 -1.50 6.15 -104.87 -0.65 -2.15 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.41 6.17 7.81 -40.82 -0.32 5.85 16 33 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.16 2.05 7.23 -52.49 -0.38 1.67 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -34.73 315.41 -8.17 -42.90 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.41 Total: 2.23 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -3.81 Total: -7.22 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.24 Total: -49.16 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.73 -8.17 -42.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826123784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.328 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds