Wall clock time and date at job start Mon Mar 30 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48494 * 109.47182 * 270.00235 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48505 * 109.47095 * 149.99711 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21563 * 120.00203 * 0.02562 * 13 12 11 15 15 C 1.47766 * 119.99701 * 180.02562 * 13 12 11 16 16 N 1.32745 * 120.06061 * 0.02562 * 15 13 12 17 17 C 1.31716 * 122.13242 * 180.02562 * 16 15 13 18 18 C 1.38300 * 121.69159 * 359.97438 * 17 16 15 19 19 C 1.39024 * 119.09437 * 0.02562 * 18 17 16 20 20 N 1.37181 * 134.65427 * 179.97438 * 19 18 17 21 21 H 0.97003 * 125.06843 * 0.04033 * 20 19 18 22 22 C 1.36726 * 109.88105 * 180.02562 * 20 19 18 23 23 C 1.34568 * 109.95273 * 0.02562 * 22 20 19 24 24 C 1.40404 * 120.05608 * 179.72885 * 15 13 12 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 33 33 H 1.08003 * 119.15173 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.45582 * 180.02562 * 18 17 16 35 35 H 1.07994 * 125.02561 * 180.02562 * 22 20 19 36 36 H 1.07997 * 126.50208 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7874 -7.5935 0.0010 15 6 2.9427 -8.4946 0.0031 16 7 4.2481 -8.2534 0.0046 17 6 5.1396 -9.2230 0.0052 18 6 4.7652 -10.5543 0.0048 19 6 3.4127 -10.8761 0.0033 20 7 2.7006 -12.0487 0.0021 21 1 3.0899 -12.9372 0.0027 22 6 1.3603 -11.7787 0.0002 23 6 1.1599 -10.4480 -0.0005 24 6 2.4760 -9.8187 0.0090 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8886 31 1 0.8535 -5.0445 0.8914 32 1 3.3856 -5.9235 0.0021 33 1 6.1900 -8.9718 0.0060 34 1 5.5131 -11.3334 0.0058 35 1 0.5780 -12.5233 -0.0007 36 1 0.2058 -9.9420 -0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826123784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:30 Heat of formation + Delta-G solvation = -5.716812 kcal Electronic energy + Delta-G solvation = -19401.802479 eV Core-core repulsion = 16270.851946 eV Total energy + Delta-G solvation = -3130.950533 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.60861 -40.60792 -38.87910 -36.97965 -35.18856 -33.45299 -32.84603 -31.61873 -30.30856 -28.59364 -25.99488 -24.55405 -23.53847 -22.30668 -22.19569 -21.41002 -19.47442 -18.57422 -18.45850 -17.07895 -16.80620 -16.80523 -16.41901 -16.07849 -15.93958 -15.56313 -15.18138 -14.97883 -14.27209 -14.09124 -13.84230 -13.80951 -13.75008 -13.41885 -12.78080 -12.73977 -12.55008 -12.37604 -11.67860 -11.63150 -11.27996 -11.14550 -10.97360 -10.60758 -10.54345 -10.12695 -9.89058 -8.88362 -8.18465 -6.29905 -0.55972 0.45703 1.42249 1.44100 1.55194 1.57846 1.81365 2.02150 2.15122 2.43667 2.94969 3.15060 3.22703 3.61342 3.84669 4.03522 4.10917 4.20432 4.20501 4.44055 4.53590 4.55298 4.60890 4.91172 4.93638 4.96602 5.04814 5.16529 5.40828 5.44891 5.52953 5.58033 5.71206 5.84799 5.85297 6.23498 6.45844 6.58970 6.86826 6.91578 7.17774 7.39361 8.93827 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041898 B = 0.002912 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.135264 B = 9612.758322 C =10255.143072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.102 4.102 11 C 0.129 3.871 12 N -0.699 5.699 13 C 0.560 3.440 14 O -0.568 6.568 15 C 0.096 3.904 16 N -0.486 5.486 17 C 0.082 3.918 18 C -0.134 4.134 19 C 0.106 3.894 20 N -0.571 5.571 21 H 0.441 0.559 22 C 0.091 3.909 23 C -0.226 4.226 24 C -0.134 4.134 25 H 0.264 0.736 26 H -0.006 1.006 27 H -0.006 1.006 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.417 0.583 33 H 0.199 0.801 34 H 0.181 0.819 35 H 0.224 0.776 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.367 -29.488 0.005 31.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.140 4.140 11 C 0.005 3.995 12 N -0.350 5.350 13 C 0.346 3.654 14 O -0.447 6.447 15 C -0.047 4.047 16 N -0.199 5.199 17 C -0.072 4.072 18 C -0.156 4.156 19 C -0.009 4.009 20 N -0.176 5.176 21 H 0.283 0.717 22 C -0.036 4.036 23 C -0.251 4.251 24 C -0.143 4.143 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.255 0.745 33 H 0.215 0.785 34 H 0.198 0.802 35 H 0.240 0.760 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.709 -28.790 0.008 30.717 hybrid contribution -0.004 0.190 -0.006 0.190 sum 10.705 -28.600 0.002 30.538 Atomic orbital electron populations 1.70116 1.07934 1.27812 1.51676 1.26033 0.95779 1.03564 0.94727 0.85393 0.78658 0.78176 0.78488 1.19756 1.20891 1.18492 1.21680 0.93738 0.92034 1.50534 0.91646 1.18933 0.94343 0.92765 0.95196 1.21602 0.98512 0.91820 1.02035 1.21336 0.91850 0.85253 1.01040 1.45891 1.11632 1.04733 1.72763 1.18270 0.87468 0.83177 0.76441 1.90715 1.17025 1.85178 1.51826 1.20363 0.90689 0.90896 1.02744 1.67473 1.00685 1.38856 1.12896 1.23032 1.00065 0.87396 0.96715 1.21661 0.92394 0.99184 1.02375 1.18489 0.93615 0.86436 1.02377 1.41660 1.05222 1.07254 1.63500 0.71705 1.22673 0.85388 0.96794 0.98747 1.21963 0.96248 0.93820 1.13118 1.20186 0.96240 0.92677 1.05229 0.92773 0.98788 0.98766 0.91554 0.91529 0.92724 0.92735 0.74539 0.78456 0.80165 0.75994 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.10 -4.29 5.27 30.59 0.16 -4.13 16 11 C 0.13 5.10 5.67 86.38 0.49 5.59 16 12 N -0.70 -24.50 5.55 -466.04 -2.58 -27.09 16 13 C 0.56 20.64 7.80 86.76 0.68 21.32 16 14 O -0.57 -24.07 15.15 -3.91 -0.06 -24.13 16 15 C 0.10 2.98 6.78 42.05 0.29 3.26 16 16 N -0.49 -12.67 9.54 -184.49 -1.76 -14.43 16 17 C 0.08 1.41 11.13 84.72 0.94 2.35 16 18 C -0.13 -1.75 10.14 22.47 0.23 -1.53 16 19 C 0.11 1.89 7.34 39.24 0.29 2.18 16 20 N -0.57 -5.92 6.04 -187.43 -1.13 -7.05 16 21 H 0.44 0.72 8.96 -92.71 -0.83 -0.11 16 22 C 0.09 1.16 11.82 83.09 0.98 2.14 16 23 C -0.23 -5.44 10.26 23.41 0.24 -5.20 16 24 C -0.13 -3.63 6.15 -20.03 -0.12 -3.75 16 25 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 26 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H -0.01 -0.36 8.14 -2.38 -0.02 -0.37 16 28 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 31 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.42 12.94 7.81 -92.71 -0.72 12.22 16 33 H 0.20 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.22 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.14 3.91 7.23 -2.91 -0.02 3.89 16 Total: -1.00 -80.26 315.41 1.35 -78.91 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.44 Total: 11.95 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.02 Total: -7.05 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -5.19 Total: -106.59 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.06 Total: -24.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -80.26 1.35 -78.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826123784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.193 kcal (2) G-P(sol) polarization free energy of solvation -80.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds