Wall clock time and date at job start Mon Mar 30 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47272 * 2 1 4 4 H 1.09000 * 109.47106 * 54.99768 * 3 2 1 5 5 C 1.50696 * 109.47145 * 174.99917 * 3 2 1 6 6 H 1.07994 * 120.00021 * 120.00046 * 5 3 2 7 7 C 1.37884 * 119.99953 * 300.00053 * 5 3 2 8 8 N 1.31515 * 119.99796 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99823 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47069 * 90.00105 * 9 7 5 11 11 H 1.48495 * 109.47196 * 209.99876 * 9 7 5 12 12 H 1.48497 * 109.47468 * 330.00079 * 9 7 5 13 13 N 1.46496 * 109.47004 * 295.00052 * 3 2 1 14 14 C 1.34777 * 120.00346 * 84.99761 * 13 3 2 15 15 O 1.21574 * 119.99943 * 359.72665 * 14 13 3 16 16 C 1.47766 * 120.00451 * 179.97438 * 14 13 3 17 17 N 1.32741 * 120.05222 * 359.45022 * 16 14 13 18 18 C 1.31729 * 122.12917 * 179.74998 * 17 16 14 19 19 C 1.38300 * 121.68792 * 0.53479 * 18 17 16 20 20 C 1.39018 * 119.09267 * 359.74119 * 19 18 17 21 21 N 1.37197 * 134.64882 * 180.02562 * 20 19 18 22 22 H 0.97000 * 125.06267 * 359.95889 * 21 20 19 23 23 C 1.36720 * 109.87651 * 179.97438 * 21 20 19 24 24 C 1.34570 * 109.95572 * 359.97438 * 23 21 20 25 25 C 1.40403 * 120.05906 * 179.72592 * 16 14 13 26 26 H 1.09000 * 109.46809 * 300.00280 * 1 2 3 27 27 H 1.09007 * 109.46859 * 59.99465 * 1 2 3 28 28 H 1.08993 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47123 * 240.00041 * 2 1 3 30 30 H 1.08997 * 109.47115 * 120.00046 * 2 1 3 31 31 H 0.97002 * 119.99821 * 179.97438 * 8 7 5 32 32 H 0.97004 * 120.00003 * 264.99474 * 13 3 2 33 33 H 1.08000 * 119.15613 * 180.29843 * 18 17 16 34 34 H 1.07996 * 120.45494 * 179.71872 * 19 18 17 35 35 H 1.08002 * 125.02227 * 180.02562 * 23 21 20 36 36 H 1.08002 * 126.50279 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8799 1.3812 10 1 6.4428 2.1128 2.0837 11 1 6.4391 -0.3111 2.1546 12 1 6.6132 0.8394 0.0271 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3431 2.6279 -0.4338 16 6 0.0445 3.3255 -2.6294 17 7 0.8957 3.3713 -3.6470 18 6 0.5885 3.9456 -4.7920 19 6 -0.6403 4.5462 -4.9969 20 6 -1.5763 4.5382 -3.9691 21 7 -2.8525 5.0205 -3.8234 22 1 -3.3486 5.4989 -4.5058 23 6 -3.3205 4.7266 -2.5729 24 6 -2.3835 4.0562 -1.8775 25 6 -1.2255 3.9114 -2.7527 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0619 2.9495 32 1 2.2721 2.1232 -1.9978 33 1 1.3163 3.9509 -5.5900 34 1 -0.8695 5.0153 -5.9423 35 1 -4.2982 4.9923 -2.1987 36 1 -2.4716 3.6950 -0.8635 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832213143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:29 Heat of formation + Delta-G solvation = 6.736523 kcal Electronic energy + Delta-G solvation = -20615.563294 eV Core-core repulsion = 17485.152778 eV Total energy + Delta-G solvation = -3130.410516 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.55176 -40.53794 -38.84282 -36.90711 -34.28157 -33.35760 -32.57542 -31.55615 -30.20266 -28.86327 -25.85007 -24.74420 -23.47905 -22.57930 -21.61576 -21.13361 -19.71461 -18.77084 -17.86061 -17.19303 -16.90851 -16.43375 -16.13526 -15.93230 -15.59728 -15.48851 -14.92170 -14.56632 -14.13512 -13.99897 -13.80929 -13.58172 -13.33883 -13.16928 -12.87003 -12.71043 -12.67153 -12.15067 -12.04995 -11.58456 -11.08652 -10.98754 -10.90489 -10.53682 -10.43142 -9.84956 -9.61885 -8.82428 -8.14395 -6.31501 -0.46637 0.51002 1.45598 1.46419 1.57597 1.66518 1.99386 2.08525 2.36621 2.59268 3.04812 3.14759 3.41234 3.70618 3.90630 4.08034 4.24473 4.48039 4.50179 4.57437 4.59075 4.63966 4.77217 4.95367 5.07105 5.10085 5.25825 5.44899 5.48255 5.54603 5.61315 5.66902 5.80503 5.89597 5.94697 6.17265 6.63581 6.74781 6.83901 7.12769 7.33972 7.55607 8.91271 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.004721 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.497455 B = 5928.961597 C = 6528.663305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.277 3.723 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.263 1.263 13 N -0.688 5.688 14 C 0.550 3.450 15 O -0.569 6.569 16 C 0.100 3.900 17 N -0.492 5.492 18 C 0.081 3.919 19 C -0.138 4.138 20 C 0.108 3.892 21 N -0.570 5.570 22 H 0.441 0.559 23 C 0.090 3.910 24 C -0.224 4.224 25 C -0.137 4.137 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.266 0.734 32 H 0.405 0.595 33 H 0.197 0.803 34 H 0.182 0.818 35 H 0.225 0.775 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.244 9.927 -16.811 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.174 3.826 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.187 1.187 13 N -0.336 5.336 14 C 0.335 3.665 15 O -0.449 6.449 16 C -0.043 4.043 17 N -0.205 5.205 18 C -0.073 4.073 19 C -0.161 4.161 20 C -0.008 4.008 21 N -0.176 5.176 22 H 0.283 0.717 23 C -0.037 4.037 24 C -0.250 4.250 25 C -0.146 4.146 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.240 0.760 33 H 0.214 0.786 34 H 0.200 0.800 35 H 0.241 0.759 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.022 9.483 -15.955 22.114 hybrid contribution 0.290 0.305 0.071 0.426 sum -11.732 9.788 -15.885 22.040 Atomic orbital electron populations 1.21662 0.96882 0.99171 1.00186 1.21778 0.93859 0.98945 1.01254 1.18464 0.93856 0.89303 0.80993 0.98013 1.21549 0.91343 1.39163 1.06790 0.91574 1.25756 1.03456 0.94190 0.94832 1.70043 1.37065 1.38235 1.09819 0.85350 0.78929 0.77559 0.78527 1.20320 1.20560 1.18709 1.46197 1.15116 1.54573 1.17673 1.18279 0.82437 0.78931 0.86812 1.90682 1.52247 1.61300 1.40638 1.20603 0.90973 0.99309 0.93407 1.67507 1.34205 1.17814 1.01001 1.23048 0.96119 0.94080 0.94087 1.21616 0.92434 1.02737 0.99275 1.18473 0.88257 0.98769 0.95272 1.41605 1.11173 1.49988 1.14806 0.71704 1.22635 1.00243 0.97358 0.83481 1.21945 0.93135 1.08795 1.01090 1.20192 0.95335 1.02231 0.96798 0.95019 0.94453 0.93401 0.94468 0.90511 0.92492 0.76028 0.78601 0.80031 0.75875 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.51 71.98 0.61 -5.27 16 2 C -0.12 -6.31 5.45 30.60 0.17 -6.15 16 3 C 0.28 15.40 2.24 44.25 0.10 15.50 16 4 H 0.00 0.13 7.58 -2.39 -0.02 0.11 16 5 C -0.55 -31.18 8.73 25.60 0.22 -30.96 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.02 1.00 5.29 84.66 0.45 1.45 16 8 N -0.91 -53.77 11.29 21.45 0.24 -53.52 16 9 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 13 N -0.69 -33.45 5.01 -449.04 -2.25 -35.70 16 14 C 0.55 25.92 6.38 86.76 0.55 26.47 16 15 O -0.57 -29.41 12.26 -3.95 -0.05 -29.46 16 16 C 0.10 3.92 6.78 42.05 0.29 4.20 16 17 N -0.49 -16.63 9.54 -184.49 -1.76 -18.39 16 18 C 0.08 1.87 11.13 84.72 0.94 2.81 16 19 C -0.14 -2.50 10.14 22.47 0.23 -2.28 16 20 C 0.11 2.47 7.34 39.23 0.29 2.76 16 21 N -0.57 -8.35 6.05 -187.42 -1.13 -9.48 16 22 H 0.44 2.34 8.96 -92.71 -0.83 1.51 16 23 C 0.09 1.55 11.82 83.09 0.98 2.53 16 24 C -0.22 -6.69 10.25 23.41 0.24 -6.45 16 25 C -0.14 -4.57 6.15 -20.03 -0.12 -4.69 16 26 H 0.03 1.61 7.84 -2.39 -0.02 1.59 16 27 H 0.04 1.79 5.64 -2.38 -0.01 1.78 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 4.42 5.95 -2.39 -0.01 4.41 16 31 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.40 18.32 7.88 -92.71 -0.73 17.59 16 33 H 0.20 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.22 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.14 4.70 7.23 -2.91 -0.02 4.68 16 Total: -1.00 -77.30 302.81 1.59 -75.70 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.43 Total: 25.09 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 4.95 Total: -0.08 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -4.90 Total: -117.10 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.05 Total: -29.46 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -77.30 1.59 -75.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832213143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.437 kcal (2) G-P(sol) polarization free energy of solvation -77.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds