Wall clock time and date at job start Mon Mar 30 2020 01:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40576 * 119.82825 * 2 1 4 4 C 1.35897 * 119.73083 * 180.02562 * 3 2 1 5 5 C 1.41191 * 119.34364 * 359.90347 * 4 3 2 6 6 N 1.32239 * 132.04289 * 180.02562 * 5 4 3 7 7 C 1.34587 * 109.01999 * 180.02562 * 6 5 4 8 8 C 1.47592 * 125.91254 * 180.02562 * 7 6 5 9 9 O 1.21588 * 119.99636 * 180.02562 * 8 7 6 10 10 N 1.34768 * 120.00304 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00056 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46845 * 35.00845 * 11 10 8 13 13 C 1.52997 * 109.47473 * 275.00296 * 11 10 8 14 14 C 1.50706 * 109.47187 * 154.99900 * 11 10 8 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.46754 * 90.00468 * 18 16 14 20 20 H 1.48498 * 109.47278 * 210.00299 * 18 16 14 21 21 H 1.48498 * 109.47109 * 330.00728 * 18 16 14 22 22 C 1.36571 * 108.16232 * 0.26641 * 7 6 5 23 23 N 1.36194 * 107.09892 * 359.57662 * 22 7 6 24 24 C 1.34849 * 119.82743 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.47168 * 269.98031 * 1 2 3 26 26 H 1.09008 * 109.47285 * 29.97666 * 1 2 3 27 27 H 1.08999 * 109.47482 * 149.97922 * 1 2 3 28 28 H 1.08001 * 120.13193 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.32988 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00396 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 32 32 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 33 33 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 34 34 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 35 35 H 1.08004 * 126.45147 * 179.74027 * 22 7 6 36 36 H 1.08000 * 119.68246 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2062 1.2195 0.0000 4 6 3.5651 1.2172 -0.0005 5 6 4.2549 -0.0147 0.0010 6 7 5.5445 -0.3076 0.0014 7 6 5.6904 -1.6456 0.0025 8 6 6.9725 -2.3766 0.0037 9 8 6.9791 -3.5924 0.0042 10 7 8.1360 -1.6965 0.0044 11 6 9.4087 -2.4221 0.0062 12 1 9.3079 -3.3337 -0.5828 13 6 9.7880 -2.7830 1.4438 14 6 10.4835 -1.5528 -0.5939 15 1 10.2428 -0.5590 -0.9415 16 6 11.7744 -2.0258 -0.6983 17 7 12.0677 -3.2357 -0.2746 18 14 13.1068 -0.9479 -1.4415 19 1 13.7512 -0.1475 -0.3693 20 1 14.1258 -1.8039 -2.1004 21 1 12.5027 -0.0354 -2.4453 22 6 4.4465 -2.2094 -0.0032 23 7 3.5443 -1.1892 0.0018 24 6 2.1777 -1.1699 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6655 2.1545 0.0004 29 1 4.1120 2.1484 -0.0009 30 1 8.1309 -0.7265 0.0036 31 1 9.0106 -3.4118 1.8778 32 1 9.8888 -1.8713 2.0326 33 1 10.7347 -3.3233 1.4450 34 1 12.9757 -3.5686 -0.3484 35 1 4.2208 -3.2656 -0.0079 36 1 1.6297 -2.1005 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858919877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:55 Heat of formation + Delta-G solvation = 44.748883 kcal Electronic energy + Delta-G solvation = -19876.449285 eV Core-core repulsion = 16747.687109 eV Total energy + Delta-G solvation = -3128.762176 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.84868 -38.81708 -37.58240 -34.71983 -33.84838 -32.46279 -32.10542 -29.23581 -28.68601 -26.97552 -25.18315 -24.06085 -22.90415 -22.19862 -20.57960 -19.29238 -18.17443 -16.91503 -16.84084 -16.08014 -15.68342 -15.17972 -14.99663 -14.71282 -14.26447 -14.10450 -13.82007 -13.62272 -13.01122 -12.79687 -12.53124 -12.30639 -11.83918 -11.68832 -11.40169 -11.13990 -11.04541 -10.87209 -10.66818 -10.27918 -10.25458 -10.15928 -9.23201 -8.96894 -8.77798 -8.48440 -7.99625 -7.80086 -6.05390 -4.13741 0.50852 1.11228 2.31194 2.42407 3.27621 3.30583 3.36681 3.40288 3.97505 4.05294 4.10893 4.34321 4.42181 4.48100 4.59801 4.82648 5.05196 5.14965 5.21240 5.26983 5.34046 5.55261 5.61235 5.64098 5.85641 5.96790 6.29099 6.47777 6.88495 6.92649 7.05082 7.21917 7.50862 7.59092 7.72530 7.82338 8.00648 8.21378 8.76888 8.84984 9.18001 9.53250 11.00853 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037608 B = 0.003585 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.337129 B = 7809.125729 C = 8344.081739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.111 4.111 3 C -0.106 4.106 4 C -0.067 4.067 5 C 0.214 3.786 6 N -0.460 5.460 7 C 0.023 3.977 8 C 0.582 3.418 9 O -0.553 6.553 10 N -0.686 5.686 11 C 0.263 3.737 12 H 0.051 0.949 13 C -0.147 4.147 14 C -0.531 4.531 15 H 0.063 0.937 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.902 3.098 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.028 4.028 23 N -0.364 5.364 24 C 0.051 3.949 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.398 0.602 31 H 0.015 0.985 32 H 0.027 0.973 33 H 0.091 0.909 34 H 0.264 0.736 35 H 0.195 0.805 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.216 7.862 1.186 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 C -0.129 4.129 4 C -0.087 4.087 5 C -0.031 4.031 6 N -0.181 5.181 7 C -0.111 4.111 8 C 0.365 3.635 9 O -0.432 6.432 10 N -0.333 5.333 11 C 0.161 3.839 12 H 0.068 0.932 13 C -0.206 4.206 14 C -0.570 4.570 15 H 0.081 0.919 16 C -0.137 4.137 17 N -0.523 5.523 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.163 4.163 23 N -0.036 5.036 24 C -0.070 4.070 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.159 0.841 29 H 0.171 0.829 30 H 0.232 0.768 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.212 0.788 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.291 7.333 1.199 23.496 hybrid contribution 0.102 0.403 -0.349 0.543 sum -22.189 7.736 0.850 23.514 Atomic orbital electron populations 1.20667 0.89071 1.03411 1.02849 1.19454 0.97176 0.91735 1.03059 1.20933 0.93364 0.98027 1.00625 1.20327 0.93575 0.94743 1.00074 1.21020 0.87458 0.87432 1.07166 1.70896 1.13341 1.13570 1.20315 1.21158 0.94495 0.89637 1.05809 1.16953 0.82180 0.86352 0.78033 1.90751 1.87117 1.12725 1.52591 1.46403 1.06237 1.10736 1.69885 1.18825 0.77812 0.93089 0.94151 0.93159 1.22084 1.02030 0.99208 0.97264 1.21243 0.93265 1.01299 1.41161 0.91913 1.24880 0.98436 0.95183 0.95224 1.69903 1.20104 1.16154 1.46126 0.86431 0.81177 0.80124 0.79281 1.20548 1.21117 1.19806 1.22643 0.87415 0.93934 1.12273 1.42710 1.06061 1.08789 1.45991 1.21422 0.80708 1.00473 1.04372 0.90698 0.90747 0.91210 0.84065 0.82920 0.76785 0.96577 0.95351 0.89020 0.92630 0.78828 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 10.00 36.00 0.36 -0.07 16 2 C -0.11 -0.84 5.85 -104.95 -0.61 -1.45 16 3 C -0.11 -0.83 9.73 -39.54 -0.38 -1.22 16 4 C -0.07 -0.72 10.11 -39.30 -0.40 -1.11 16 5 C 0.21 3.17 7.79 -156.03 -1.22 1.95 16 6 N -0.46 -8.32 11.01 -9.35 -0.10 -8.43 16 7 C 0.02 0.43 6.94 -83.45 -0.58 -0.15 16 8 C 0.58 13.24 7.78 -12.45 -0.10 13.15 16 9 O -0.55 -13.95 16.53 5.29 0.09 -13.86 16 10 N -0.69 -16.23 5.07 -55.96 -0.28 -16.51 16 11 C 0.26 7.09 2.56 -69.08 -0.18 6.92 16 12 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 13 C -0.15 -3.85 9.26 37.16 0.34 -3.50 16 14 C -0.53 -14.81 8.73 -34.44 -0.30 -15.11 16 15 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 16 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 17 N -0.89 -25.58 11.32 55.43 0.63 -24.96 16 18 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.03 -0.44 11.47 -16.22 -0.19 -0.62 16 23 N -0.36 -4.87 2.93 -62.37 -0.18 -5.05 16 24 C 0.05 0.48 10.54 -16.59 -0.17 0.30 16 25 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 26 H 0.07 0.24 8.09 -51.92 -0.42 -0.18 16 27 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 28 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 29 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.40 8.83 8.24 -40.82 -0.34 8.49 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.19 2.55 8.06 -52.48 -0.42 2.13 16 36 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -33.69 314.53 -8.04 -41.72 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.38 Total: 5.22 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -3.52 Total: 0.81 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.06 Total: -54.95 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.69 -8.04 -41.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858919877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.472 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds