Wall clock time and date at job start Mon Mar 30 2020 01:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40576 * 119.82825 * 2 1 4 4 C 1.35897 * 119.73083 * 180.02562 * 3 2 1 5 5 C 1.41191 * 119.34364 * 359.90347 * 4 3 2 6 6 N 1.32239 * 132.04289 * 180.02562 * 5 4 3 7 7 C 1.34587 * 109.01999 * 180.02562 * 6 5 4 8 8 C 1.47592 * 125.91254 * 180.02562 * 7 6 5 9 9 O 1.21588 * 119.99636 * 180.02562 * 8 7 6 10 10 N 1.34768 * 120.00304 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00056 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46845 * 35.00845 * 11 10 8 13 13 C 1.52997 * 109.47473 * 275.00296 * 11 10 8 14 14 C 1.50706 * 109.47187 * 154.99900 * 11 10 8 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.46754 * 90.00468 * 18 16 14 20 20 H 1.48498 * 109.47278 * 210.00299 * 18 16 14 21 21 H 1.48498 * 109.47109 * 330.00728 * 18 16 14 22 22 C 1.36571 * 108.16232 * 0.26641 * 7 6 5 23 23 N 1.36194 * 107.09892 * 359.57662 * 22 7 6 24 24 C 1.34849 * 119.82743 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.47168 * 269.98031 * 1 2 3 26 26 H 1.09008 * 109.47285 * 29.97666 * 1 2 3 27 27 H 1.08999 * 109.47482 * 149.97922 * 1 2 3 28 28 H 1.08001 * 120.13193 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.32988 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00396 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 32 32 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 33 33 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 34 34 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 35 35 H 1.08004 * 126.45147 * 179.74027 * 22 7 6 36 36 H 1.08000 * 119.68246 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2062 1.2195 0.0000 4 6 3.5651 1.2172 -0.0005 5 6 4.2549 -0.0147 0.0010 6 7 5.5445 -0.3076 0.0014 7 6 5.6904 -1.6456 0.0025 8 6 6.9725 -2.3766 0.0037 9 8 6.9791 -3.5924 0.0042 10 7 8.1360 -1.6965 0.0044 11 6 9.4087 -2.4221 0.0062 12 1 9.3079 -3.3337 -0.5828 13 6 9.7880 -2.7830 1.4438 14 6 10.4835 -1.5528 -0.5939 15 1 10.2428 -0.5590 -0.9415 16 6 11.7744 -2.0258 -0.6983 17 7 12.0677 -3.2357 -0.2746 18 14 13.1068 -0.9479 -1.4415 19 1 13.7512 -0.1475 -0.3693 20 1 14.1258 -1.8039 -2.1004 21 1 12.5027 -0.0354 -2.4453 22 6 4.4465 -2.2094 -0.0032 23 7 3.5443 -1.1892 0.0018 24 6 2.1777 -1.1699 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6655 2.1545 0.0004 29 1 4.1120 2.1484 -0.0009 30 1 8.1309 -0.7265 0.0036 31 1 9.0106 -3.4118 1.8778 32 1 9.8888 -1.8713 2.0326 33 1 10.7347 -3.3233 1.4450 34 1 12.9757 -3.5686 -0.3484 35 1 4.2208 -3.2656 -0.0079 36 1 1.6297 -2.1005 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858919877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:54 Heat of formation + Delta-G solvation = 22.598670 kcal Electronic energy + Delta-G solvation = -19877.409791 eV Core-core repulsion = 16747.687109 eV Total energy + Delta-G solvation = -3129.722682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.90455 -40.49992 -38.58877 -36.75696 -34.86962 -34.27541 -33.09702 -31.01572 -29.94376 -27.79140 -27.35795 -25.18600 -24.09110 -23.12647 -22.33299 -21.07544 -19.46634 -18.48795 -17.79242 -17.33489 -17.18054 -16.99696 -16.21428 -15.90185 -15.70045 -15.47648 -14.96443 -14.75168 -14.41402 -14.22297 -13.74049 -13.24880 -13.18063 -13.03416 -12.90884 -12.75370 -12.44237 -12.43221 -12.31022 -12.15859 -11.91245 -11.49072 -11.15019 -11.03252 -10.62119 -9.96195 -9.66353 -8.93619 -8.19316 -6.37004 -0.34221 0.18381 1.02234 1.42660 1.44670 1.45261 1.56344 2.30991 2.33803 2.54885 2.57923 3.04137 3.10492 3.47240 3.69332 3.91698 4.00457 4.14264 4.28861 4.46214 4.70289 4.72965 4.79607 4.89549 4.92063 5.04386 5.05789 5.25484 5.29310 5.33186 5.39257 5.55218 5.58273 5.64064 5.82836 5.98502 6.05546 6.54531 6.68210 6.91834 7.25907 7.42052 8.87497 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037608 B = 0.003585 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.337129 B = 7809.125729 C = 8344.081739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.098 4.098 3 C -0.074 4.074 4 C -0.098 4.098 5 C 0.209 3.791 6 N -0.502 5.502 7 C -0.018 4.018 8 C 0.582 3.418 9 O -0.588 6.588 10 N -0.689 5.689 11 C 0.269 3.731 12 H 0.006 0.994 13 C -0.133 4.133 14 C -0.552 4.552 15 H 0.067 0.933 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.976 3.024 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.019 4.019 23 N -0.363 5.363 24 C 0.030 3.970 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.184 0.816 29 H 0.166 0.834 30 H 0.405 0.595 31 H 0.014 0.986 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.268 0.732 35 H 0.211 0.789 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.286 10.214 0.955 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.100 4.100 3 C -0.098 4.098 4 C -0.118 4.118 5 C -0.037 4.037 6 N -0.224 5.224 7 C -0.150 4.150 8 C 0.368 3.632 9 O -0.470 6.470 10 N -0.335 5.335 11 C 0.166 3.834 12 H 0.024 0.976 13 C -0.192 4.192 14 C -0.590 4.590 15 H 0.085 0.915 16 C -0.184 4.184 17 N -0.554 5.554 18 Si 0.800 3.200 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.156 4.156 23 N -0.033 5.033 24 C -0.090 4.090 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.201 0.799 29 H 0.183 0.817 30 H 0.240 0.760 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.228 0.772 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -25.402 9.706 0.973 27.211 hybrid contribution 0.734 -0.247 -0.271 0.821 sum -24.668 9.459 0.703 26.429 Atomic orbital electron populations 1.20804 0.85899 1.04997 1.04149 1.20051 0.99192 0.90867 0.99904 1.21529 0.92264 0.99998 0.95994 1.20650 0.94898 0.93688 1.02600 1.21598 0.86861 0.89172 1.06078 1.70739 1.15804 1.13004 1.22875 1.20532 0.93587 0.90618 1.10300 1.17429 0.83207 0.86153 0.76458 1.90700 1.87920 1.14296 1.54065 1.46198 1.05768 1.10843 1.70716 1.18483 0.79401 0.91762 0.93714 0.97643 1.21905 1.00926 0.99260 0.97096 1.21504 0.93950 1.01614 1.41905 0.91466 1.25803 1.00716 0.96510 0.95338 1.70037 1.20838 1.17776 1.46702 0.85288 0.77862 0.78237 0.78607 1.19437 1.20644 1.19142 1.22718 0.86819 0.94955 1.11086 1.42812 1.07402 1.07610 1.45470 1.22193 0.78945 1.02933 1.04910 0.89308 0.88951 0.89992 0.79884 0.81651 0.76028 0.96663 0.94381 0.90801 0.92313 0.77193 0.79009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.28 10.00 71.23 0.71 0.44 16 2 C -0.10 -1.03 5.85 -20.07 -0.12 -1.15 16 3 C -0.07 -0.84 9.73 22.30 0.22 -0.62 16 4 C -0.10 -1.89 10.11 22.45 0.23 -1.66 16 5 C 0.21 6.09 7.79 134.20 1.05 7.14 16 6 N -0.50 -18.84 11.01 -183.48 -2.02 -20.86 16 7 C -0.02 -0.73 6.94 40.80 0.28 -0.45 16 8 C 0.58 28.18 7.78 86.71 0.68 28.85 16 9 O -0.59 -31.62 16.53 -3.99 -0.07 -31.69 16 10 N -0.69 -34.51 5.07 -449.22 -2.28 -36.79 16 11 C 0.27 15.34 2.56 44.25 0.11 15.45 16 12 H 0.01 0.37 7.58 -2.39 -0.02 0.35 16 13 C -0.13 -7.29 9.26 71.98 0.67 -6.62 16 14 C -0.55 -31.70 8.73 25.60 0.22 -31.48 16 15 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 16 C 0.02 0.93 5.30 84.65 0.45 1.38 16 17 N -0.92 -54.32 11.32 21.45 0.24 -54.08 16 18 Si 0.98 44.09 29.54 68.60 2.03 46.11 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C -0.02 -0.61 11.47 83.63 0.96 0.34 16 23 N -0.36 -9.30 2.93 -351.24 -1.03 -10.33 16 24 C 0.03 0.46 10.54 83.16 0.88 1.34 16 25 H 0.09 0.11 8.14 -2.38 -0.02 0.10 16 26 H 0.09 0.01 8.09 -2.38 -0.02 -0.01 16 27 H 0.08 0.11 8.07 -2.39 -0.02 0.09 16 28 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 29 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 30 H 0.40 18.98 8.24 -92.71 -0.76 18.22 16 31 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 4.30 6.07 -2.38 -0.01 4.28 16 34 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.21 5.61 8.06 -2.91 -0.02 5.58 16 36 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -78.01 314.53 3.55 -74.46 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.34 Total: 20.20 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 6.33 Total: 12.97 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -5.08 Total: -122.05 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.07 Total: -31.69 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -78.01 3.55 -74.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858919877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.061 kcal (2) G-P(sol) polarization free energy of solvation -78.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds