Wall clock time and date at job start Mon Mar 30 2020 01:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47125 * 92.85445 * 3 2 1 5 5 C 1.52994 * 109.47100 * 212.85675 * 3 2 1 6 6 C 1.52997 * 109.47515 * 184.99853 * 5 3 2 7 7 N 1.46503 * 109.47034 * 332.85505 * 3 2 1 8 8 C 1.34771 * 120.00227 * 84.99987 * 7 3 2 9 9 O 1.21584 * 119.99963 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00014 * 180.02562 * 8 7 3 11 11 C 1.39468 * 119.99722 * 185.18933 * 10 8 7 12 12 C 1.38639 * 119.64444 * 174.88314 * 11 10 8 13 13 C 1.40827 * 118.67201 * 179.72271 * 12 11 10 14 14 C 1.41549 * 120.99636 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99634 * 150.54091 * 14 13 12 16 16 C 1.40027 * 119.99803 * 330.54089 * 14 13 12 17 17 N 1.30742 * 119.99923 * 164.47623 * 16 14 13 18 18 Si 1.86796 * 120.00278 * 344.47034 * 16 14 13 19 19 H 1.48507 * 109.46778 * 90.06508 * 18 16 14 20 20 H 1.48501 * 109.47621 * 210.06335 * 18 16 14 21 21 H 1.48500 * 109.47358 * 330.06936 * 18 16 14 22 22 C 1.41158 * 118.00406 * 359.97438 * 13 12 11 23 23 C 1.36592 * 119.13113 * 0.02562 * 22 13 12 24 24 N 1.32061 * 121.25525 * 0.02562 * 23 22 13 25 25 H 4.18744 * 15.03898 * 0.02562 * 4 2 1 26 26 H 1.09007 * 109.47122 * 304.99831 * 5 3 2 27 27 H 1.09004 * 109.47504 * 64.99801 * 5 3 2 28 28 H 1.09004 * 109.46778 * 59.99503 * 6 5 3 29 29 H 1.08994 * 109.47862 * 179.97438 * 6 5 3 30 30 H 1.09007 * 109.46907 * 300.00109 * 6 5 3 31 31 H 0.97004 * 120.00173 * 265.00133 * 7 3 2 32 32 H 0.96996 * 120.00366 * 5.18718 * 10 8 7 33 33 H 1.08005 * 120.66854 * 359.73975 * 12 11 10 34 34 H 0.97003 * 120.00524 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.43314 * 179.97438 * 22 13 12 36 36 H 1.07998 * 119.36972 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0094 0.0520 -1.0264 5 6 3.1555 1.2126 0.7826 6 6 4.6803 1.2831 0.6781 7 7 3.1349 -1.2282 0.6302 8 6 3.2642 -2.3542 -0.0991 9 8 2.9755 -2.3500 -1.2801 10 7 3.7134 -3.4848 0.4808 11 6 3.9501 -4.6197 -0.2946 12 6 4.5122 -5.7443 0.2896 13 6 4.7369 -6.8809 -0.5110 14 6 5.3084 -8.0554 0.0344 15 1 5.0604 -9.0203 -0.3824 16 6 6.1953 -7.9660 1.1143 17 7 6.4866 -9.0333 1.8110 18 14 6.9624 -6.3220 1.5594 19 1 6.0937 -5.6191 2.5374 20 1 8.3020 -6.5470 2.1595 21 1 7.1013 -5.4929 0.3353 22 6 4.3750 -6.8136 -1.8738 23 6 3.8267 -5.6609 -2.3601 24 7 3.6310 -4.6132 -1.5805 25 1 -1.0500 0.0005 0.0001 26 1 2.7205 2.1220 0.3678 27 1 2.8672 1.1166 1.8294 28 1 4.9686 1.3791 -0.3688 29 1 5.0432 2.1467 1.2352 30 1 5.1153 0.3737 1.0928 31 1 3.3656 -1.2315 1.5724 32 1 3.8721 -3.5093 1.4374 33 1 4.7723 -5.7490 1.3379 34 1 7.1007 -8.9714 2.5593 35 1 4.5303 -7.6622 -2.5236 36 1 3.5488 -5.6051 -3.4022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871729479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:11 Heat of formation + Delta-G solvation = 62.699335 kcal Electronic energy + Delta-G solvation = -20125.175984 eV Core-core repulsion = 16997.192197 eV Total energy + Delta-G solvation = -3127.983786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.11724 -38.50237 -36.56989 -34.32532 -33.80500 -32.41578 -32.18701 -31.26058 -28.88505 -26.68800 -25.95197 -22.38104 -22.35034 -21.69725 -20.17976 -18.58634 -18.30063 -17.71079 -16.40464 -15.84885 -15.41828 -15.15775 -14.67922 -14.46790 -14.27287 -13.94100 -13.74479 -13.18210 -13.06132 -12.95066 -12.65495 -12.13743 -11.71544 -11.62908 -11.28815 -10.96115 -10.82234 -10.71663 -10.60638 -10.19072 -10.06293 -9.90176 -9.70102 -9.36122 -9.15029 -8.22304 -7.85583 -7.25870 -7.06510 -4.73865 2.37779 2.44427 2.63354 2.81099 2.99765 3.11707 3.23447 3.24622 3.66488 3.87513 4.23890 4.41267 4.58773 4.73132 4.81545 5.07002 5.41923 5.43261 5.48327 5.67497 5.70209 5.83272 5.92048 6.03282 6.26027 6.35902 6.43151 6.52985 6.57662 6.92031 7.04783 7.19772 7.29612 7.58944 7.65477 7.94518 8.17942 8.22154 8.44980 8.65360 8.97835 9.49575 9.94889 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.004790 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.273457 B = 5844.472465 C = 6549.384488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.194 4.194 3 C 0.274 3.726 4 H 0.110 0.890 5 C -0.123 4.123 6 C -0.153 4.153 7 N -0.744 5.744 8 C 0.693 3.307 9 O -0.523 6.523 10 N -0.672 5.672 11 C 0.387 3.613 12 C -0.328 4.328 13 C 0.130 3.870 14 C -0.438 4.438 15 H 0.096 0.904 16 C 0.086 3.914 17 N -0.802 5.802 18 Si 0.921 3.079 19 H -0.270 1.270 20 H -0.291 1.291 21 H -0.248 1.248 22 C -0.272 4.272 23 C 0.130 3.870 24 N -0.553 5.553 25 H 0.216 0.784 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.394 0.606 32 H 0.404 0.596 33 H 0.110 0.890 34 H 0.287 0.713 35 H 0.110 0.890 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 16.596 3.166 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.196 4.196 3 C 0.169 3.831 4 H 0.128 0.872 5 C -0.161 4.161 6 C -0.210 4.210 7 N -0.401 5.401 8 C 0.393 3.607 9 O -0.393 6.393 10 N -0.319 5.319 11 C 0.159 3.841 12 C -0.353 4.353 13 C 0.121 3.879 14 C -0.468 4.468 15 H 0.114 0.886 16 C -0.135 4.135 17 N -0.426 5.426 18 Si 0.748 3.252 19 H -0.197 1.197 20 H -0.219 1.219 21 H -0.171 1.171 22 C -0.296 4.296 23 C -0.022 4.022 24 N -0.273 5.273 25 H 0.232 0.768 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.238 0.762 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.935 17.225 1.838 17.764 hybrid contribution 0.648 -0.347 1.753 1.901 sum -3.287 16.878 3.591 17.566 Atomic orbital electron populations 1.24918 0.95903 0.99451 1.00934 1.23640 0.94877 1.00831 1.00222 1.17623 0.82825 0.83502 0.99180 0.87235 1.21762 0.96899 0.96734 1.00680 1.21781 0.94582 1.02132 1.02547 1.45266 1.72314 1.09376 1.13191 1.16065 0.79045 0.79995 0.85600 1.91034 1.52043 1.83004 1.13237 1.42632 1.68623 1.09918 1.10750 1.17762 0.93260 0.83960 0.89149 1.21269 1.17850 0.96140 1.00091 1.17682 0.88211 0.91236 0.90725 1.19504 1.21954 0.94242 1.11147 0.88646 1.26186 0.95303 0.98702 0.93281 1.69633 1.27394 1.31325 1.14217 0.86212 0.76964 0.81807 0.80236 1.19696 1.21899 1.17094 1.21683 1.12265 0.99735 0.95875 1.21626 0.94295 0.88555 0.97701 1.67312 1.26671 1.30001 1.03301 0.76760 0.90000 0.91074 0.92186 0.92272 0.92164 0.77215 0.76153 0.87212 0.90198 0.87228 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 19.25 29.55 0.57 -1.77 16 2 C -0.19 -2.59 12.84 -37.12 -0.48 -3.06 16 3 C 0.27 3.32 2.41 -70.72 -0.17 3.15 16 4 H 0.11 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.12 -1.01 5.43 -26.74 -0.15 -1.16 16 6 C -0.15 -1.22 9.80 37.16 0.36 -0.85 16 7 N -0.74 -9.81 4.50 -61.45 -0.28 -10.08 16 8 C 0.69 12.88 8.47 -86.93 -0.74 12.15 16 9 O -0.52 -12.02 14.27 5.29 0.08 -11.95 16 10 N -0.67 -12.69 5.40 -15.86 -0.09 -12.78 16 11 C 0.39 9.03 7.42 -154.67 -1.15 7.88 16 12 C -0.33 -7.84 7.15 -38.46 -0.27 -8.12 16 13 C 0.13 3.29 5.16 -106.55 -0.55 2.74 16 14 C -0.44 -11.57 9.65 -37.65 -0.36 -11.93 16 15 H 0.10 2.62 8.06 -52.49 -0.42 2.19 16 16 C 0.09 2.17 5.46 -17.35 -0.09 2.08 16 17 N -0.80 -20.59 13.92 55.55 0.77 -19.82 16 18 Si 0.92 20.18 24.50 -169.99 -4.16 16.01 16 19 H -0.27 -5.54 6.48 56.52 0.37 -5.17 16 20 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.25 -5.72 6.94 56.52 0.39 -5.33 16 22 C -0.27 -6.41 9.85 -39.07 -0.38 -6.79 16 23 C 0.13 2.99 11.10 -18.05 -0.20 2.79 16 24 N -0.55 -13.69 7.86 -12.76 -0.10 -13.79 16 25 H 0.22 1.82 7.80 -54.09 -0.42 1.40 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.52 7.75 -51.93 -0.40 0.11 16 31 H 0.39 3.91 8.62 -40.82 -0.35 3.56 16 32 H 0.40 6.09 8.71 -40.82 -0.36 5.73 16 33 H 0.11 2.51 4.45 -52.48 -0.23 2.28 16 34 H 0.29 6.65 8.29 -40.82 -0.34 6.31 16 35 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -32.76 314.90 -6.94 -39.70 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.30 Total: 10.86 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.61 Total: -2.90 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.31 Total: -56.47 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.16 Total: 16.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.76 -6.94 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871729479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.400 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds