Wall clock time and date at job start Mon Mar 30 2020 01:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39049 * 119.35531 * 2 1 4 4 C 1.35705 * 122.67321 * 179.69635 * 3 2 1 5 5 C 1.41020 * 120.59682 * 0.57494 * 4 3 2 6 6 N 1.32139 * 134.71177 * 179.69169 * 5 4 3 7 7 N 1.39984 * 108.89223 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.05984 * 180.02562 * 7 6 5 9 9 C 1.34242 * 109.87206 * 0.02562 * 7 6 5 10 10 C 1.37572 * 107.93169 * 359.97438 * 9 7 6 11 11 C 1.38456 * 119.35604 * 180.27116 * 2 1 3 12 12 C 1.47303 * 120.74381 * 0.02562 * 11 2 1 13 13 O 1.21628 * 120.00301 * 89.99828 * 12 11 2 14 14 N 1.34774 * 119.99916 * 270.00211 * 12 11 2 15 15 C 1.46505 * 120.00279 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.46685 * 35.00224 * 15 14 12 17 17 C 1.53000 * 109.47256 * 275.00101 * 15 14 12 18 18 C 1.50698 * 109.47329 * 154.99832 * 15 14 12 19 19 H 1.08003 * 119.99988 * 0.02562 * 18 15 14 20 20 C 1.37867 * 119.99878 * 180.02562 * 18 15 14 21 21 N 1.31515 * 120.00292 * 0.02562 * 20 18 15 22 22 Si 1.86807 * 119.99939 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47160 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47181 * 120.00185 * 22 20 18 25 25 H 1.48506 * 109.47292 * 240.00141 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.72915 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.73015 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72996 * 1 2 3 29 29 H 1.07999 * 118.66678 * 359.97438 * 3 2 1 30 30 H 1.08008 * 119.70521 * 180.29589 * 4 3 2 31 31 H 1.08000 * 126.03136 * 180.02562 * 9 7 6 32 32 H 0.97004 * 120.00389 * 359.97438 * 14 12 11 33 33 H 1.09000 * 109.46985 * 59.99585 * 17 15 14 34 34 H 1.09000 * 109.47111 * 179.97438 * 17 15 14 35 35 H 1.09004 * 109.47113 * 300.00110 * 17 15 14 36 36 H 0.97003 * 120.00061 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2119 0.0000 4 6 3.5434 1.2905 0.0061 5 6 4.3303 0.1202 0.0005 6 7 5.6283 -0.1272 -0.0011 7 7 5.8255 -1.5131 -0.0079 8 1 6.6900 -1.9529 -0.0100 9 6 4.6399 -2.1427 -0.0111 10 6 3.6519 -1.1853 -0.0059 11 6 2.1858 -1.2068 -0.0057 12 6 1.4515 -2.4837 -0.0123 13 8 1.1487 -3.0057 -1.0683 14 7 1.1151 -3.0736 1.1518 15 6 0.3843 -4.3434 1.1453 16 1 0.7142 -4.9480 0.3006 17 6 -1.1155 -4.0680 1.0207 18 6 0.6539 -5.0847 2.4294 19 1 1.3042 -4.6531 3.1758 20 6 0.0704 -6.3140 2.6511 21 7 -0.7211 -6.8399 1.7420 22 14 0.4040 -7.2327 4.2431 23 1 1.3205 -6.4319 5.0940 24 1 -0.8749 -7.4529 4.9649 25 1 1.0312 -8.5433 3.9362 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 -0.8876 -0.5180 28 1 -0.3633 0.8924 -0.5097 29 1 1.6167 2.1280 -0.0004 30 1 4.0234 2.2580 0.0106 31 1 4.4884 -3.2120 -0.0160 32 1 1.3568 -2.6575 1.9941 33 1 -1.3105 -3.5317 0.0919 34 1 -1.6592 -5.0127 1.0154 35 1 -1.4454 -3.4632 1.8655 36 1 -1.1314 -7.7049 1.8979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874251287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:06 Heat of formation + Delta-G solvation = 49.169214 kcal Electronic energy + Delta-G solvation = -20555.000682 eV Core-core repulsion = 17426.430185 eV Total energy + Delta-G solvation = -3128.570496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.17647 -39.00677 -37.04084 -34.78246 -32.72638 -32.26218 -30.96607 -29.99074 -28.82596 -26.55550 -25.28611 -24.11362 -22.38116 -20.99924 -20.42854 -19.21910 -18.20353 -17.51191 -16.22711 -15.57012 -15.33961 -15.17231 -14.90107 -14.80702 -14.23100 -13.46087 -13.26653 -13.12993 -12.99445 -12.41922 -12.14983 -11.82258 -11.64090 -11.46292 -11.36347 -11.13423 -10.98132 -10.80506 -10.63755 -10.35174 -10.26641 -10.03327 -9.09814 -9.05277 -8.70629 -8.58501 -7.96032 -7.53969 -6.15367 -4.24671 0.51253 1.85585 2.34224 2.65478 3.21107 3.27407 3.29732 3.32183 3.72008 4.07120 4.25629 4.35597 4.74001 4.95055 5.16494 5.18180 5.23981 5.47403 5.48606 5.59746 5.73282 5.85182 6.05341 6.20996 6.39518 6.43426 6.66493 6.79796 6.83947 6.94879 7.04210 7.12495 7.40440 7.52786 7.54348 7.66864 7.88262 8.11893 8.61849 8.74231 9.05932 9.43064 10.90535 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.005166 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.389447 B = 5418.402089 C = 6168.638214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.089 4.089 3 C -0.068 4.068 4 C -0.098 4.098 5 C 0.103 3.897 6 N -0.307 5.307 7 N -0.431 5.431 8 H 0.443 0.557 9 C 0.092 3.908 10 C -0.182 4.182 11 C -0.039 4.039 12 C 0.549 3.451 13 O -0.546 6.546 14 N -0.698 5.698 15 C 0.263 3.737 16 H 0.049 0.951 17 C -0.147 4.147 18 C -0.533 4.533 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.883 5.883 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.283 1.283 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.190 0.810 32 H 0.391 0.609 33 H 0.015 0.985 34 H 0.090 0.910 35 H 0.027 0.973 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.543 12.646 -1.221 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.091 4.091 3 C -0.091 4.091 4 C -0.119 4.119 5 C -0.051 4.051 6 N -0.136 5.136 7 N -0.133 5.133 8 H 0.288 0.712 9 C -0.063 4.063 10 C -0.192 4.192 11 C -0.044 4.044 12 C 0.333 3.667 13 O -0.425 6.425 14 N -0.345 5.345 15 C 0.161 3.839 16 H 0.067 0.933 17 C -0.206 4.206 18 C -0.571 4.571 19 H 0.080 0.920 20 C -0.136 4.136 21 N -0.520 5.520 22 Si 0.728 3.272 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.209 1.209 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.207 0.793 32 H 0.223 0.777 33 H 0.034 0.966 34 H 0.109 0.891 35 H 0.047 0.953 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.398 12.592 -1.992 15.266 hybrid contribution -0.006 -1.053 1.253 1.637 sum 8.392 11.539 -0.738 14.287 Atomic orbital electron populations 1.20845 0.90558 1.03273 1.02709 1.19596 0.96128 0.91238 1.02140 1.20377 0.93577 0.97256 0.97884 1.19797 0.92488 0.95156 1.04430 1.20852 0.90385 0.94527 0.99382 1.77617 1.15563 0.90109 1.30272 1.46269 1.08218 1.05337 1.53455 0.71216 1.22624 0.85068 0.99213 0.99431 1.20181 0.92463 0.92173 1.14422 1.20370 0.90142 0.93860 1.00072 1.18083 0.79550 0.83884 0.85163 1.90798 1.55922 1.64657 1.31136 1.46610 1.56007 1.25212 1.06636 1.18798 0.88149 0.78770 0.98134 0.93306 1.22074 0.99527 1.02167 0.96789 1.21242 1.29673 1.03629 1.02572 0.92013 1.24877 0.94703 0.97104 0.96958 1.69912 1.30493 1.17812 1.33805 0.86411 0.78134 0.79649 0.83010 1.19763 1.20835 1.20900 0.90854 0.90929 0.91370 0.85263 0.85410 0.79320 0.77660 0.96566 0.89135 0.95349 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.58 36.01 0.35 -1.23 16 2 C -0.09 -1.30 5.91 -104.24 -0.62 -1.91 16 3 C -0.07 -0.82 9.45 -40.19 -0.38 -1.20 16 4 C -0.10 -1.23 10.02 -39.43 -0.40 -1.63 16 5 C 0.10 1.55 7.49 -83.07 -0.62 0.92 16 6 N -0.31 -4.42 12.71 33.24 0.42 -4.00 16 7 N -0.43 -5.01 7.20 30.75 0.22 -4.79 16 8 H 0.44 3.30 8.96 -182.69 -1.64 1.67 16 9 C 0.09 1.24 12.00 -16.74 -0.20 1.04 16 10 C -0.18 -2.89 6.35 -103.15 -0.65 -3.55 16 11 C -0.04 -0.66 5.80 -102.75 -0.60 -1.25 16 12 C 0.55 11.13 5.64 -12.58 -0.07 11.06 16 13 O -0.55 -13.20 16.75 5.25 0.09 -13.12 16 14 N -0.70 -14.37 5.07 -56.05 -0.28 -14.66 16 15 C 0.26 6.51 2.56 -69.08 -0.18 6.33 16 16 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 17 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 18 C -0.53 -13.74 8.73 -34.44 -0.30 -14.04 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.88 -24.35 11.32 55.43 0.63 -23.72 16 22 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.17 7.02 -51.93 -0.36 0.81 16 28 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 31 H 0.19 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.39 7.24 8.52 -40.82 -0.35 6.89 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 312.88 15.07 4.72 4.72 Total: -1.00 -32.23 312.88 -8.20 -40.43 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.56 Total: 6.94 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -3.42 Total: -7.02 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.99 Total: -47.16 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.23 -8.20 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874251287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.603 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds