Wall clock time and date at job start Mon Mar 30 2020 01:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39049 * 119.35531 * 2 1 4 4 C 1.35705 * 122.67321 * 179.69635 * 3 2 1 5 5 C 1.41020 * 120.59682 * 0.57494 * 4 3 2 6 6 N 1.32139 * 134.71177 * 179.69169 * 5 4 3 7 7 N 1.39984 * 108.89223 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.05984 * 180.02562 * 7 6 5 9 9 C 1.34242 * 109.87206 * 0.02562 * 7 6 5 10 10 C 1.37572 * 107.93169 * 359.97438 * 9 7 6 11 11 C 1.38456 * 119.35604 * 180.27116 * 2 1 3 12 12 C 1.47303 * 120.74381 * 0.02562 * 11 2 1 13 13 O 1.21628 * 120.00301 * 89.99828 * 12 11 2 14 14 N 1.34774 * 119.99916 * 270.00211 * 12 11 2 15 15 C 1.46505 * 120.00279 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.46685 * 35.00224 * 15 14 12 17 17 C 1.53000 * 109.47256 * 275.00101 * 15 14 12 18 18 C 1.50698 * 109.47329 * 154.99832 * 15 14 12 19 19 H 1.08003 * 119.99988 * 0.02562 * 18 15 14 20 20 C 1.37867 * 119.99878 * 180.02562 * 18 15 14 21 21 N 1.31515 * 120.00292 * 0.02562 * 20 18 15 22 22 Si 1.86807 * 119.99939 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47160 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47181 * 120.00185 * 22 20 18 25 25 H 1.48506 * 109.47292 * 240.00141 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.72915 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.73015 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72996 * 1 2 3 29 29 H 1.07999 * 118.66678 * 359.97438 * 3 2 1 30 30 H 1.08008 * 119.70521 * 180.29589 * 4 3 2 31 31 H 1.08000 * 126.03136 * 180.02562 * 9 7 6 32 32 H 0.97004 * 120.00389 * 359.97438 * 14 12 11 33 33 H 1.09000 * 109.46985 * 59.99585 * 17 15 14 34 34 H 1.09000 * 109.47111 * 179.97438 * 17 15 14 35 35 H 1.09004 * 109.47113 * 300.00110 * 17 15 14 36 36 H 0.97003 * 120.00061 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2119 0.0000 4 6 3.5434 1.2905 0.0061 5 6 4.3303 0.1202 0.0005 6 7 5.6283 -0.1272 -0.0011 7 7 5.8255 -1.5131 -0.0079 8 1 6.6900 -1.9529 -0.0100 9 6 4.6399 -2.1427 -0.0111 10 6 3.6519 -1.1853 -0.0059 11 6 2.1858 -1.2068 -0.0057 12 6 1.4515 -2.4837 -0.0123 13 8 1.1487 -3.0057 -1.0683 14 7 1.1151 -3.0736 1.1518 15 6 0.3843 -4.3434 1.1453 16 1 0.7142 -4.9480 0.3006 17 6 -1.1155 -4.0680 1.0207 18 6 0.6539 -5.0847 2.4294 19 1 1.3042 -4.6531 3.1758 20 6 0.0704 -6.3140 2.6511 21 7 -0.7211 -6.8399 1.7420 22 14 0.4040 -7.2327 4.2431 23 1 1.3205 -6.4319 5.0940 24 1 -0.8749 -7.4529 4.9649 25 1 1.0312 -8.5433 3.9362 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 -0.8876 -0.5180 28 1 -0.3633 0.8924 -0.5097 29 1 1.6167 2.1280 -0.0004 30 1 4.0234 2.2580 0.0106 31 1 4.4884 -3.2120 -0.0160 32 1 1.3568 -2.6575 1.9941 33 1 -1.3105 -3.5317 0.0919 34 1 -1.6592 -5.0127 1.0154 35 1 -1.4454 -3.4632 1.8655 36 1 -1.1314 -7.7049 1.8979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874251287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:05 Heat of formation + Delta-G solvation = 27.060617 kcal Electronic energy + Delta-G solvation = -20555.959382 eV Core-core repulsion = 17426.430185 eV Total energy + Delta-G solvation = -3129.529197 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.24824 -40.58536 -38.20840 -36.67714 -34.35205 -33.65129 -32.15015 -31.10741 -30.55007 -27.73427 -27.32662 -25.24068 -23.82123 -22.13461 -22.03662 -20.81314 -19.23129 -19.00172 -17.81118 -17.24611 -16.90397 -16.32292 -16.24381 -15.90428 -15.78572 -15.01000 -14.69100 -14.43147 -14.27255 -14.09642 -13.68934 -13.14718 -13.02299 -12.89654 -12.80193 -12.75314 -12.52769 -12.34184 -12.26471 -12.12831 -11.83548 -11.20800 -11.06836 -10.72848 -10.57442 -9.79769 -9.72707 -8.64511 -8.16751 -6.34017 -0.55600 0.78491 1.24477 1.44598 1.46199 1.57583 1.63100 1.78296 2.35016 2.57300 2.73167 3.13808 3.21274 3.67990 3.93382 3.98546 4.13536 4.34372 4.43246 4.58979 4.75074 4.78342 4.82388 4.93424 4.95367 5.10911 5.19991 5.33601 5.39876 5.44329 5.57650 5.60895 5.68872 5.80963 5.89588 6.10318 6.17605 6.49787 6.72756 6.89968 7.30967 7.47974 8.89591 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.005166 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.389447 B = 5418.402089 C = 6168.638214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.076 4.076 3 C -0.068 4.068 4 C -0.089 4.089 5 C 0.087 3.913 6 N -0.319 5.319 7 N -0.411 5.411 8 H 0.461 0.539 9 C 0.088 3.912 10 C -0.207 4.207 11 C -0.077 4.077 12 C 0.559 3.441 13 O -0.594 6.594 14 N -0.691 5.691 15 C 0.270 3.730 16 H 0.002 0.998 17 C -0.133 4.133 18 C -0.544 4.544 19 H 0.071 0.929 20 C 0.017 3.983 21 N -0.916 5.916 22 Si 0.970 3.030 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.283 1.283 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.101 0.899 29 H 0.172 0.828 30 H 0.159 0.841 31 H 0.199 0.801 32 H 0.403 0.597 33 H 0.013 0.987 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.506 14.813 0.188 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.090 4.090 4 C -0.110 4.110 5 C -0.067 4.067 6 N -0.148 5.148 7 N -0.115 5.115 8 H 0.309 0.691 9 C -0.069 4.069 10 C -0.218 4.218 11 C -0.083 4.083 12 C 0.346 3.654 13 O -0.476 6.476 14 N -0.338 5.338 15 C 0.167 3.833 16 H 0.020 0.980 17 C -0.192 4.192 18 C -0.582 4.582 19 H 0.090 0.910 20 C -0.183 4.183 21 N -0.554 5.554 22 Si 0.795 3.205 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.209 1.209 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.120 0.880 29 H 0.189 0.811 30 H 0.176 0.824 31 H 0.216 0.784 32 H 0.238 0.762 33 H 0.032 0.968 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.403 14.787 -0.561 17.532 hybrid contribution -0.270 -1.674 0.759 1.857 sum 9.133 13.114 0.198 15.982 Atomic orbital electron populations 1.20900 0.89982 1.03194 1.03329 1.19941 0.96713 0.91443 0.99714 1.20718 0.93655 0.97512 0.97158 1.20266 0.92690 0.95684 1.02336 1.21266 0.90503 0.94996 0.99949 1.77538 1.15487 0.91300 1.30470 1.46237 1.08678 1.04578 1.52028 0.69120 1.22777 0.85301 0.99522 0.99252 1.20375 0.92234 0.93550 1.15639 1.20080 0.90738 0.92630 1.04813 1.18538 0.78438 0.84542 0.83906 1.90756 1.57746 1.66351 1.32720 1.46350 1.55781 1.24036 1.07658 1.18416 0.88627 0.80020 0.96212 0.98041 1.21890 0.99071 1.01033 0.97199 1.21522 1.29774 1.04060 1.02823 0.91045 1.25746 0.94376 0.97980 1.00200 1.70055 1.31401 1.18214 1.35773 0.85321 0.78106 0.78098 0.78941 1.18567 1.20471 1.20926 0.89767 0.94430 0.87991 0.81050 0.82365 0.78443 0.76242 0.96766 0.91442 0.93947 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 9.58 71.24 0.68 -2.28 16 2 C -0.08 -2.09 5.91 -19.62 -0.12 -2.20 16 3 C -0.07 -1.40 9.45 21.88 0.21 -1.19 16 4 C -0.09 -1.95 10.02 22.36 0.22 -1.73 16 5 C 0.09 2.44 7.49 42.12 0.32 2.76 16 6 N -0.32 -8.60 12.71 -48.75 -0.62 -9.22 16 7 N -0.41 -9.02 7.20 -56.62 -0.41 -9.43 16 8 H 0.46 6.15 8.96 -213.40 -1.91 4.24 16 9 C 0.09 2.33 12.00 84.17 1.01 3.34 16 10 C -0.21 -6.49 6.35 -18.91 -0.12 -6.61 16 11 C -0.08 -2.62 5.80 -18.65 -0.11 -2.73 16 12 C 0.56 23.43 5.64 86.63 0.49 23.92 16 13 O -0.59 -30.26 16.75 -4.12 -0.07 -30.33 16 14 N -0.69 -29.18 5.07 -449.48 -2.28 -31.46 16 15 C 0.27 13.86 2.56 44.24 0.11 13.98 16 16 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 17 C -0.13 -6.66 9.26 71.98 0.67 -6.00 16 18 C -0.54 -28.29 8.73 25.60 0.22 -28.07 16 19 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 20 C 0.02 0.91 5.30 84.65 0.45 1.35 16 21 N -0.92 -51.70 11.32 21.44 0.24 -51.46 16 22 Si 0.97 41.32 29.54 68.60 2.03 43.35 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.04 1.22 7.02 -2.39 -0.02 1.20 16 28 H 0.10 1.85 8.07 -2.38 -0.02 1.83 16 29 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.20 4.71 8.06 -2.91 -0.02 4.69 16 32 H 0.40 14.99 8.52 -92.71 -0.79 14.20 16 33 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 35 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -71.76 312.88 1.36 -70.40 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -1.57 Total: 23.59 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 4.04 Total: -5.45 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -3.06 Total: -101.56 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.07 Total: -30.33 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -71.76 1.36 -70.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874251287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.464 kcal (2) G-P(sol) polarization free energy of solvation -71.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds