Wall clock time and date at job start Mon Mar 30 2020 01:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47122 * 122.89900 * 3 2 1 5 5 C 1.36938 * 120.00192 * 263.91349 * 4 3 2 6 6 H 1.07997 * 120.00221 * 199.38558 * 5 4 3 7 7 C 1.38814 * 119.99570 * 19.38513 * 5 4 3 8 8 N 1.31617 * 119.99963 * 22.28622 * 7 5 4 9 9 Si 1.86802 * 119.99552 * 202.27986 * 7 5 4 10 10 H 1.48496 * 109.46985 * 60.00477 * 9 7 5 11 11 H 1.48510 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47277 * 299.99912 * 9 7 5 13 13 C 1.46506 * 120.00005 * 83.90872 * 4 3 2 14 14 C 1.50696 * 109.47050 * 90.00483 * 13 4 3 15 15 O 1.21279 * 119.99894 * 0.02562 * 14 13 4 16 16 N 1.34770 * 120.00219 * 180.02562 * 14 13 4 17 17 C 1.39407 * 120.00271 * 179.97438 * 16 14 13 18 18 N 1.32375 * 119.69454 * 359.97438 * 17 16 14 19 19 C 1.31909 * 121.63613 * 180.02562 * 18 17 16 20 20 C 1.38115 * 120.84938 * 0.03133 * 19 18 17 21 21 C 1.38799 * 119.30720 * 359.70024 * 20 19 18 22 22 C 1.38404 * 118.49197 * 0.53716 * 21 20 19 23 23 C 1.50706 * 120.44452 * 179.76527 * 22 21 20 24 24 H 4.40642 * 5.51380 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47904 * 2.89905 * 3 2 1 26 26 H 1.09000 * 109.47207 * 242.89376 * 3 2 1 27 27 H 0.97011 * 119.99498 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47154 * 330.00162 * 13 4 3 29 29 H 1.08999 * 109.47246 * 210.00325 * 13 4 3 30 30 H 0.97001 * 120.00194 * 0.02562 * 16 14 13 31 31 H 1.07997 * 119.57239 * 180.02562 * 19 18 17 32 32 H 1.07996 * 120.34909 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.75461 * 180.29960 * 21 20 19 34 34 H 1.09000 * 109.46985 * 269.71787 * 23 22 21 35 35 H 1.09001 * 109.46717 * 149.72267 * 23 22 21 36 36 H 1.08998 * 109.47010 * 29.72221 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7511 -1.1597 5 6 3.4811 0.0891 -2.3071 6 1 4.1192 0.5680 -3.0349 7 6 3.0126 -1.1977 -2.5346 8 7 1.9283 -1.6214 -1.9205 9 14 3.9211 -2.3277 -3.7123 10 1 5.3106 -2.5319 -3.2297 11 1 3.2228 -3.6366 -3.7802 12 1 3.9518 -1.7129 -5.0638 13 6 3.2506 2.2100 -1.0920 14 6 4.6226 2.5815 -0.5917 15 8 5.4243 1.7133 -0.3189 16 7 4.9588 3.8786 -0.4472 17 6 6.2279 4.2223 0.0162 18 7 7.0978 3.2698 0.3131 19 6 8.3084 3.5515 0.7548 20 6 8.7133 4.8610 0.9249 21 6 7.8327 5.8895 0.6196 22 6 6.5678 5.5621 0.1630 23 6 5.5748 6.6436 -0.1765 24 1 -1.0501 0.0000 0.0003 25 1 3.0099 -1.0255 -0.0520 26 1 3.0091 0.4691 0.9148 27 1 1.6008 -2.5206 -2.0799 28 1 2.4963 2.6035 -0.4106 29 1 3.0991 2.6330 -2.0851 30 1 4.3175 4.5730 -0.6650 31 1 8.9917 2.7479 0.9865 32 1 9.7061 5.0824 1.2875 33 1 8.1265 6.9219 0.7392 34 1 4.9862 6.8871 0.7081 35 1 4.9127 6.2933 -0.9683 36 1 6.1072 7.5325 -0.5148 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878551837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:08 Heat of formation + Delta-G solvation = 103.873054 kcal Electronic energy + Delta-G solvation = -20326.884858 eV Core-core repulsion = 17200.686498 eV Total energy + Delta-G solvation = -3126.198360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60148 -38.56222 -35.78202 -34.60068 -33.37162 -31.55743 -31.39287 -30.49803 -27.66604 -26.89090 -25.89612 -23.71457 -22.18701 -21.64250 -19.87939 -18.01753 -17.48775 -16.73896 -16.25697 -15.50869 -15.31443 -15.07914 -14.89729 -14.15280 -14.01579 -13.65193 -13.34344 -13.17962 -12.97194 -12.72693 -12.70598 -12.44408 -11.65545 -11.49671 -11.32074 -10.99376 -10.69080 -10.40891 -10.24975 -10.00821 -9.72219 -9.53993 -8.97074 -8.88443 -8.62215 -8.38346 -7.97361 -7.01857 -5.78400 -3.20459 1.19544 1.41677 3.19874 3.34573 3.43164 3.48409 3.53580 4.06305 4.15239 4.37859 4.53438 4.57758 4.73505 4.90790 4.98759 5.15858 5.35167 5.39276 5.41352 5.52712 5.58404 5.71570 5.84522 5.88428 6.05170 6.08535 6.21235 6.22641 6.47657 6.72639 6.98428 7.23688 7.40717 7.54411 7.77423 8.23047 8.35128 8.89695 9.08405 9.18190 9.73929 10.18180 11.25174 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.004796 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.542575 B = 5837.315119 C = 6521.274987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.096 4.096 3 C 0.270 3.730 4 N -0.559 5.559 5 C -0.264 4.264 6 H 0.071 0.929 7 C 0.010 3.990 8 N -0.885 5.885 9 Si 0.901 3.099 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.135 3.865 14 C 0.461 3.539 15 O -0.449 6.449 16 N -0.671 5.671 17 C 0.373 3.627 18 N -0.473 5.473 19 C 0.128 3.872 20 C -0.217 4.217 21 C -0.052 4.052 22 C -0.189 4.189 23 C -0.105 4.105 24 H 0.191 0.809 25 H 0.095 0.905 26 H 0.038 0.962 27 H 0.256 0.744 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.410 0.590 31 H 0.154 0.846 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.858 16.580 5.407 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.099 4.099 3 C 0.145 3.855 4 N -0.275 5.275 5 C -0.393 4.393 6 H 0.089 0.911 7 C -0.190 4.190 8 N -0.527 5.527 9 Si 0.730 3.270 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.002 3.998 14 C 0.244 3.756 15 O -0.314 6.314 16 N -0.321 5.321 17 C 0.140 3.860 18 N -0.187 5.187 19 C -0.030 4.030 20 C -0.239 4.239 21 C -0.078 4.078 22 C -0.195 4.195 23 C -0.163 4.163 24 H 0.208 0.792 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.247 0.753 31 H 0.171 0.829 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.990 14.702 5.406 17.153 hybrid contribution 0.250 0.566 -0.720 0.949 sum 7.240 15.268 4.686 17.535 Atomic orbital electron populations 1.24170 0.95278 1.06087 1.06042 1.24202 0.95175 0.95468 0.95080 1.17678 0.82675 0.98095 0.87030 1.43566 1.73353 0.98719 1.11904 1.19041 1.24646 0.97815 0.97753 0.91074 1.24875 0.96013 0.98983 0.99135 1.70131 1.19180 1.17954 1.45452 0.86397 0.79900 0.80161 0.80514 1.20847 1.21668 1.20967 1.20670 0.90299 0.88033 1.00751 1.23770 0.93103 0.80658 0.78032 1.90751 1.50749 1.47169 1.42706 1.44491 1.11905 1.10468 1.65202 1.18603 0.87065 0.88324 0.91963 1.67808 1.02652 1.34968 1.13259 1.22694 0.91881 0.95510 0.92953 1.21956 1.01303 0.94058 1.06576 1.21182 0.92034 0.99561 0.95039 1.20297 0.97554 0.93684 1.07945 1.20631 0.97586 0.96469 1.01591 0.79158 0.88715 0.94413 0.93404 0.91022 0.89886 0.75325 0.82864 0.85254 0.85104 0.91066 0.91681 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.69 19.25 29.55 0.57 -6.12 16 2 C -0.10 -2.35 11.50 -37.13 -0.43 -2.78 16 3 C 0.27 6.68 5.41 -6.83 -0.04 6.64 16 4 N -0.56 -13.94 1.98 -177.94 -0.35 -14.29 16 5 C -0.26 -7.29 9.63 -15.06 -0.14 -7.43 16 6 H 0.07 1.97 7.92 -52.49 -0.42 1.55 16 7 C 0.01 0.27 4.82 -17.43 -0.08 0.18 16 8 N -0.88 -25.40 9.61 55.49 0.53 -24.87 16 9 Si 0.90 22.28 29.61 -169.99 -5.03 17.25 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.14 2.66 6.15 -5.19 -0.03 2.63 16 14 C 0.46 9.08 7.86 -10.99 -0.09 9.00 16 15 O -0.45 -10.95 14.68 5.56 0.08 -10.87 16 16 N -0.67 -10.23 5.30 -11.43 -0.06 -10.29 16 17 C 0.37 5.88 7.41 -154.70 -1.15 4.73 16 18 N -0.47 -8.57 7.87 -12.37 -0.10 -8.67 16 19 C 0.13 1.81 11.18 -17.56 -0.20 1.61 16 20 C -0.22 -2.39 10.11 -39.42 -0.40 -2.78 16 21 C -0.05 -0.54 9.85 -39.31 -0.39 -0.93 16 22 C -0.19 -2.24 5.91 -104.28 -0.62 -2.85 16 23 C -0.11 -0.85 9.59 36.01 0.35 -0.51 16 24 H 0.19 3.56 7.80 -54.08 -0.42 3.14 16 25 H 0.09 2.59 6.59 -51.93 -0.34 2.25 16 26 H 0.04 0.86 8.12 -51.93 -0.42 0.44 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 28 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 30 H 0.41 4.53 6.68 -40.82 -0.27 4.25 16 31 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 36 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -35.24 317.54 -7.08 -42.32 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.30 Total: 3.24 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -2.64 Total: 1.38 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.02 Total: -58.11 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.24 -7.08 -42.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878551837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.198 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds