Wall clock time and date at job start Mon Mar 30 2020 01:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47122 * 122.89900 * 3 2 1 5 5 C 1.36938 * 120.00192 * 263.91349 * 4 3 2 6 6 H 1.07997 * 120.00221 * 199.38558 * 5 4 3 7 7 C 1.38814 * 119.99570 * 19.38513 * 5 4 3 8 8 N 1.31617 * 119.99963 * 22.28622 * 7 5 4 9 9 Si 1.86802 * 119.99552 * 202.27986 * 7 5 4 10 10 H 1.48496 * 109.46985 * 60.00477 * 9 7 5 11 11 H 1.48510 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47277 * 299.99912 * 9 7 5 13 13 C 1.46506 * 120.00005 * 83.90872 * 4 3 2 14 14 C 1.50696 * 109.47050 * 90.00483 * 13 4 3 15 15 O 1.21279 * 119.99894 * 0.02562 * 14 13 4 16 16 N 1.34770 * 120.00219 * 180.02562 * 14 13 4 17 17 C 1.39407 * 120.00271 * 179.97438 * 16 14 13 18 18 N 1.32375 * 119.69454 * 359.97438 * 17 16 14 19 19 C 1.31909 * 121.63613 * 180.02562 * 18 17 16 20 20 C 1.38115 * 120.84938 * 0.03133 * 19 18 17 21 21 C 1.38799 * 119.30720 * 359.70024 * 20 19 18 22 22 C 1.38404 * 118.49197 * 0.53716 * 21 20 19 23 23 C 1.50706 * 120.44452 * 179.76527 * 22 21 20 24 24 H 4.40642 * 5.51380 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47904 * 2.89905 * 3 2 1 26 26 H 1.09000 * 109.47207 * 242.89376 * 3 2 1 27 27 H 0.97011 * 119.99498 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47154 * 330.00162 * 13 4 3 29 29 H 1.08999 * 109.47246 * 210.00325 * 13 4 3 30 30 H 0.97001 * 120.00194 * 0.02562 * 16 14 13 31 31 H 1.07997 * 119.57239 * 180.02562 * 19 18 17 32 32 H 1.07996 * 120.34909 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.75461 * 180.29960 * 21 20 19 34 34 H 1.09000 * 109.46985 * 269.71787 * 23 22 21 35 35 H 1.09001 * 109.46717 * 149.72267 * 23 22 21 36 36 H 1.08998 * 109.47010 * 29.72221 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7511 -1.1597 5 6 3.4811 0.0891 -2.3071 6 1 4.1192 0.5680 -3.0349 7 6 3.0126 -1.1977 -2.5346 8 7 1.9283 -1.6214 -1.9205 9 14 3.9211 -2.3277 -3.7123 10 1 5.3106 -2.5319 -3.2297 11 1 3.2228 -3.6366 -3.7802 12 1 3.9518 -1.7129 -5.0638 13 6 3.2506 2.2100 -1.0920 14 6 4.6226 2.5815 -0.5917 15 8 5.4243 1.7133 -0.3189 16 7 4.9588 3.8786 -0.4472 17 6 6.2279 4.2223 0.0162 18 7 7.0978 3.2698 0.3131 19 6 8.3084 3.5515 0.7548 20 6 8.7133 4.8610 0.9249 21 6 7.8327 5.8895 0.6196 22 6 6.5678 5.5621 0.1630 23 6 5.5748 6.6436 -0.1765 24 1 -1.0501 0.0000 0.0003 25 1 3.0099 -1.0255 -0.0520 26 1 3.0091 0.4691 0.9148 27 1 1.6008 -2.5206 -2.0799 28 1 2.4963 2.6035 -0.4106 29 1 3.0991 2.6330 -2.0851 30 1 4.3175 4.5730 -0.6650 31 1 8.9917 2.7479 0.9865 32 1 9.7061 5.0824 1.2875 33 1 8.1265 6.9219 0.7392 34 1 4.9862 6.8871 0.7081 35 1 4.9127 6.2933 -0.9683 36 1 6.1072 7.5325 -0.5148 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878551837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:07 Heat of formation + Delta-G solvation = 81.634295 kcal Electronic energy + Delta-G solvation = -20327.849203 eV Core-core repulsion = 17200.686498 eV Total energy + Delta-G solvation = -3127.162705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73041 -39.96231 -37.58822 -35.90103 -34.34591 -33.54050 -33.16148 -31.66671 -29.09995 -28.03068 -27.78659 -25.04460 -23.58543 -22.84833 -21.28052 -19.40417 -19.20182 -18.24023 -17.90255 -16.96468 -16.54674 -16.44084 -16.24161 -15.63925 -15.47743 -15.02529 -14.97466 -14.73187 -14.26167 -13.80415 -13.58760 -13.43254 -13.32755 -13.20342 -12.78417 -12.57670 -12.43212 -12.28663 -12.01719 -11.67570 -11.21434 -10.80708 -10.73170 -10.50133 -10.37237 -9.92019 -9.04959 -8.96781 -7.87957 -5.30190 0.19482 0.47624 1.42043 1.47697 1.54225 1.90842 1.98148 2.35631 2.51036 2.58459 3.01346 3.24806 3.56023 3.73807 3.90282 4.00924 4.08325 4.16540 4.24967 4.43944 4.53161 4.63249 4.66250 4.83695 4.87728 4.89582 5.17187 5.22551 5.24521 5.34253 5.47498 5.59749 5.64195 5.95369 6.20370 6.38205 7.02734 7.19579 7.34928 7.55166 7.75159 8.15982 9.13272 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.004796 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.542575 B = 5837.315119 C = 6521.274987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.139 4.139 3 C 0.278 3.722 4 N -0.576 5.576 5 C -0.269 4.269 6 H 0.063 0.937 7 C -0.036 4.036 8 N -0.904 5.904 9 Si 0.955 3.045 10 H -0.293 1.293 11 H -0.290 1.290 12 H -0.274 1.274 13 C 0.135 3.865 14 C 0.469 3.531 15 O -0.508 6.508 16 N -0.656 5.656 17 C 0.331 3.669 18 N -0.530 5.530 19 C 0.094 3.906 20 C -0.197 4.197 21 C -0.053 4.053 22 C -0.175 4.175 23 C -0.107 4.107 24 H 0.228 0.772 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.249 0.751 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.429 0.571 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.175 0.825 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 19.794 5.525 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.294 5.294 5 C -0.398 4.398 6 H 0.081 0.919 7 C -0.233 4.233 8 N -0.548 5.548 9 Si 0.784 3.216 10 H -0.220 1.220 11 H -0.215 1.215 12 H -0.200 1.200 13 C 0.004 3.996 14 C 0.253 3.747 15 O -0.377 6.377 16 N -0.307 5.307 17 C 0.100 3.900 18 N -0.245 5.245 19 C -0.063 4.063 20 C -0.218 4.218 21 C -0.079 4.079 22 C -0.181 4.181 23 C -0.164 4.164 24 H 0.245 0.755 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.269 0.731 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.192 0.808 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.154 18.014 5.529 20.156 hybrid contribution 0.302 -0.244 -0.673 0.777 sum 7.456 17.770 4.856 19.873 Atomic orbital electron populations 1.25011 0.96178 1.03946 1.04114 1.24298 0.95628 0.97401 0.96888 1.17398 0.83455 0.96305 0.87545 1.43648 1.73903 1.00806 1.11079 1.19193 1.23904 0.98467 0.98272 0.91922 1.25466 0.96798 1.00047 1.01039 1.70257 1.20133 1.17583 1.46808 0.85545 0.78105 0.78670 0.79318 1.21966 1.21539 1.20001 1.20882 0.91027 0.85398 1.02313 1.23391 0.92365 0.81674 0.77250 1.90732 1.52157 1.49175 1.45668 1.43983 1.12749 1.09316 1.64688 1.18876 0.86854 0.89796 0.94480 1.67597 1.04534 1.37550 1.14813 1.22956 0.91262 0.97574 0.94471 1.22345 1.02763 0.92715 1.03946 1.21749 0.91082 1.01454 0.93608 1.20720 0.98901 0.92690 1.05743 1.20769 0.97186 0.95953 1.02458 0.75523 0.92383 0.93375 0.94127 0.88347 0.88406 0.73057 0.82449 0.81728 0.80812 0.89591 0.91223 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.95 19.25 74.32 1.43 -10.52 16 2 C -0.14 -6.83 11.50 31.12 0.36 -6.47 16 3 C 0.28 14.21 5.41 84.57 0.46 14.67 16 4 N -0.58 -29.42 1.98 -716.89 -1.42 -30.83 16 5 C -0.27 -15.22 9.63 84.03 0.81 -14.41 16 6 H 0.06 3.56 7.92 -2.91 -0.02 3.54 16 7 C -0.04 -2.07 4.82 84.86 0.41 -1.67 16 8 N -0.90 -53.00 9.61 21.65 0.21 -52.79 16 9 Si 0.95 46.99 29.61 68.60 2.03 49.02 16 10 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.13 5.30 6.15 85.63 0.53 5.83 16 14 C 0.47 18.83 7.86 87.66 0.69 19.52 16 15 O -0.51 -25.96 14.68 -3.03 -0.04 -26.00 16 16 N -0.66 -19.72 5.30 -308.48 -1.63 -21.35 16 17 C 0.33 10.29 7.41 132.90 0.98 11.27 16 18 N -0.53 -19.75 7.87 -193.04 -1.52 -21.27 16 19 C 0.09 2.67 11.18 84.65 0.95 3.62 16 20 C -0.20 -3.80 10.11 22.37 0.23 -3.58 16 21 C -0.05 -0.90 9.85 22.44 0.22 -0.68 16 22 C -0.17 -3.67 5.91 -19.64 -0.12 -3.79 16 23 C -0.11 -1.30 9.59 71.24 0.68 -0.62 16 24 H 0.23 7.79 7.80 -4.41 -0.03 7.76 16 25 H 0.06 3.35 6.59 -2.39 -0.02 3.33 16 26 H 0.05 2.28 8.12 -2.39 -0.02 2.26 16 27 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 28 H 0.10 3.30 8.07 -2.39 -0.02 3.28 16 29 H 0.10 3.51 8.04 -2.39 -0.02 3.49 16 30 H 0.43 8.81 6.68 -92.71 -0.62 8.19 16 31 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.80 6.57 -2.39 -0.02 0.78 16 36 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 Total: -1.00 -80.32 317.54 5.72 -74.59 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.47 Total: 15.47 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 7.63 Total: 13.17 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -4.36 Total: -126.26 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.04 Total: -26.00 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -80.32 5.72 -74.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878551837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.226 kcal (2) G-P(sol) polarization free energy of solvation -80.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds