Wall clock time and date at job start Mon Mar 30 2020 00:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 119.99865 * 2 1 4 4 H 1.48493 * 109.47241 * 269.99740 * 3 2 1 5 5 H 1.48502 * 109.47288 * 29.99884 * 3 2 1 6 6 H 1.48509 * 109.47032 * 149.99836 * 3 2 1 7 7 C 1.37878 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99672 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00596 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47647 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47294 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47005 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00162 * 180.02562 * 12 11 10 14 14 O 1.21594 * 120.00081 * 0.02562 * 13 12 11 15 15 C 1.47585 * 120.00353 * 179.97438 * 13 12 11 16 16 C 1.40084 * 120.35574 * 359.97375 * 15 13 12 17 17 N 1.31167 * 121.11938 * 180.02562 * 16 15 13 18 18 C 1.33367 * 121.67447 * 0.02562 * 17 16 15 19 19 C 1.41853 * 133.16433 * 179.97438 * 18 17 16 20 20 C 1.34456 * 107.95356 * 180.02562 * 19 18 17 21 21 N 1.36545 * 109.71769 * 0.02562 * 20 19 18 22 22 H 0.97002 * 125.59727 * 180.02562 * 21 20 19 23 23 C 1.37852 * 108.80200 * 0.02562 * 21 20 19 24 24 C 1.38731 * 133.56557 * 179.97438 * 23 21 20 25 25 H 0.96998 * 120.00352 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47394 * 59.99677 * 9 7 2 27 27 H 1.09000 * 109.46757 * 300.00493 * 9 7 2 28 28 H 1.09008 * 109.46708 * 59.99780 * 10 9 7 29 29 H 1.08998 * 109.46860 * 300.00346 * 10 9 7 30 30 H 1.08997 * 109.46752 * 60.00061 * 11 10 9 31 31 H 1.08995 * 109.47262 * 300.00249 * 11 10 9 32 32 H 0.96999 * 120.00095 * 0.02562 * 12 11 10 33 33 H 1.07996 * 119.44152 * 0.05205 * 16 15 13 34 34 H 1.07992 * 126.02375 * 0.04465 * 19 18 17 35 35 H 1.08002 * 125.14032 * 180.26565 * 20 19 18 36 36 H 1.08003 * 120.90822 * 0.04376 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6364 0.0022 12 7 6.0399 -4.0176 0.0027 13 6 7.3650 -4.2639 0.0033 14 8 8.1551 -3.3397 0.0039 15 6 7.8570 -5.6553 0.0044 16 6 6.9534 -6.7257 0.0054 17 7 7.3741 -7.9681 0.0068 18 6 8.6738 -8.2673 0.0079 19 6 9.3874 -9.4933 0.0100 20 6 10.7013 -9.2081 0.0109 21 7 10.8789 -7.8542 0.0101 22 1 11.7343 -7.3969 0.0101 23 6 9.6427 -7.2440 0.0092 24 6 9.2304 -5.9194 0.0086 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8751 -0.6803 -0.8888 28 1 3.6585 -3.1509 -0.8876 29 1 3.6579 -3.1497 0.8924 30 1 5.9148 -2.1219 0.8918 31 1 5.9149 -2.1233 -0.8881 32 1 5.4096 -4.7549 0.0026 33 1 5.8923 -6.5247 0.0045 34 1 8.9520 -10.4815 0.0105 35 1 11.4961 -9.9393 0.0084 36 1 9.9502 -5.1143 0.0081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878731251.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:49 Heat of formation + Delta-G solvation = -3.220576 kcal Electronic energy + Delta-G solvation = -19208.777990 eV Core-core repulsion = 16077.935702 eV Total energy + Delta-G solvation = -3130.842288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.76744 -40.86129 -38.60853 -37.03355 -35.18235 -34.01294 -33.32803 -31.19517 -30.79168 -28.78525 -25.51822 -24.66996 -23.92438 -22.26170 -21.83281 -21.45285 -19.52586 -18.98032 -18.19245 -17.65897 -17.23940 -16.78136 -16.45494 -16.05615 -16.02827 -15.33844 -15.19930 -14.77911 -14.52516 -14.23046 -13.92523 -13.81452 -13.72032 -13.45360 -13.44233 -12.72296 -12.68240 -11.96451 -11.78427 -11.58091 -11.45555 -11.34036 -11.27939 -10.74629 -10.42685 -10.17216 -9.55737 -9.13300 -8.27665 -6.31463 -0.50535 0.18292 1.38243 1.39817 1.45730 1.51672 1.86360 1.97652 2.24808 2.37870 2.88081 3.08115 3.20889 3.63384 3.72143 3.81849 3.97763 4.08325 4.19208 4.22732 4.43800 4.52347 4.61976 4.85635 4.90832 4.92182 5.00188 5.05962 5.31745 5.36669 5.42031 5.51117 5.58173 5.66900 5.81000 6.29466 6.46808 6.50875 6.76915 6.90163 7.11592 7.33240 8.88781 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.050685 B = 0.002771 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.295923 B =10102.987448 C =10629.535344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.012 4.012 10 C -0.102 4.102 11 C 0.127 3.873 12 N -0.709 5.709 13 C 0.566 3.434 14 O -0.581 6.581 15 C -0.195 4.195 16 C 0.132 3.868 17 N -0.482 5.482 18 C 0.090 3.910 19 C -0.234 4.234 20 C 0.119 3.881 21 N -0.567 5.567 22 H 0.439 0.561 23 C 0.010 3.990 24 C -0.012 4.012 25 H 0.266 0.734 26 H 0.022 0.978 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.179 0.821 34 H 0.165 0.835 35 H 0.234 0.766 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.350 -19.704 0.031 32.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.050 4.050 10 C -0.140 4.140 11 C 0.003 3.997 12 N -0.361 5.361 13 C 0.354 3.646 14 O -0.463 6.463 15 C -0.202 4.202 16 C -0.038 4.038 17 N -0.190 5.190 18 C -0.041 4.041 19 C -0.259 4.259 20 C -0.013 4.013 21 N -0.171 5.171 22 H 0.281 0.719 23 C -0.100 4.100 24 C -0.041 4.041 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.251 0.749 33 H 0.196 0.804 34 H 0.183 0.817 35 H 0.250 0.750 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 26.326 -19.621 0.035 32.834 hybrid contribution 0.097 1.572 -0.020 1.575 sum 26.424 -18.049 0.015 31.999 Atomic orbital electron populations 1.70058 1.08249 1.28103 1.52779 1.25998 0.95600 1.03489 0.94283 0.85688 0.79547 0.78451 0.79160 1.19271 1.21140 1.16993 1.21476 0.91956 0.93249 1.50115 0.94420 1.19467 0.94016 0.94642 0.96902 1.21507 0.91912 0.98239 1.02383 1.21377 0.94465 0.82007 1.01820 1.45880 1.06520 1.09831 1.73828 1.18154 0.82455 0.88257 0.75719 1.90747 1.56288 1.46806 1.52410 1.20445 0.94721 0.93526 1.11502 1.23034 1.00453 0.86080 0.94227 1.67227 1.16355 1.21624 1.13828 1.19830 0.88344 0.95351 1.00578 1.20938 0.92536 0.97093 1.15326 1.22890 0.98368 0.83761 0.96272 1.41888 1.06378 1.06678 1.62157 0.71931 1.18970 0.88140 0.94057 1.08829 1.20646 0.95197 0.94142 0.94090 0.92548 0.95992 0.96090 0.91549 0.91561 0.91966 0.91901 0.74865 0.80429 0.81748 0.74967 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.73 13.96 21.45 0.30 -59.44 16 2 C 0.00 0.18 5.47 84.66 0.46 0.64 16 3 Si 0.95 44.47 27.47 68.60 1.88 46.35 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 7 C -0.53 -30.14 9.66 25.60 0.25 -29.89 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.10 -3.68 5.27 30.59 0.16 -3.52 16 11 C 0.13 4.00 5.67 86.38 0.49 4.49 16 12 N -0.71 -18.95 5.51 -466.23 -2.57 -21.51 16 13 C 0.57 16.45 7.77 86.71 0.67 17.13 16 14 O -0.58 -20.82 16.40 -4.01 -0.07 -20.89 16 15 C -0.20 -4.80 5.89 -19.97 -0.12 -4.91 16 16 C 0.13 3.03 10.69 85.24 0.91 3.94 16 17 N -0.48 -12.09 10.40 -187.78 -1.95 -14.04 16 18 C 0.09 1.95 7.32 40.46 0.30 2.25 16 19 C -0.23 -3.28 10.84 22.30 0.24 -3.04 16 20 C 0.12 0.74 11.82 83.09 0.98 1.73 16 21 N -0.57 -5.18 6.14 -187.65 -1.15 -6.33 16 22 H 0.44 1.09 8.96 -92.71 -0.83 0.26 16 23 C 0.01 0.18 7.27 38.97 0.28 0.47 16 24 C -0.01 -0.26 9.72 22.78 0.22 -0.04 16 25 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 27 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 28 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.41 8.75 6.51 -92.71 -0.60 8.14 16 33 H 0.18 3.15 6.38 -2.91 -0.02 3.13 16 34 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.23 -1.05 8.06 -2.91 -0.02 -1.07 16 36 H 0.15 3.00 7.72 -2.91 -0.02 2.97 16 Total: -1.00 -79.19 311.38 1.06 -78.13 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -0.36 Total: 8.93 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.97 Total: -11.20 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -5.37 Total: -101.32 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.07 Total: -20.89 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -79.19 1.06 -78.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878731251.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.914 kcal (2) G-P(sol) polarization free energy of solvation -79.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds