Wall clock time and date at job start Mon Mar 30 2020 01:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47584 * 2 1 4 4 H 1.09002 * 109.46828 * 305.00231 * 3 2 1 5 5 C 1.50696 * 109.47304 * 184.99900 * 3 2 1 6 6 H 1.07998 * 120.00244 * 239.99907 * 5 3 2 7 7 C 1.37881 * 119.99729 * 59.99944 * 5 3 2 8 8 N 1.31516 * 120.00316 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99757 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47297 * 60.00274 * 9 7 5 11 11 H 1.48496 * 109.47088 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46842 * 299.99875 * 9 7 5 13 13 N 1.46505 * 109.46989 * 65.00041 * 3 2 1 14 14 C 1.34777 * 119.99724 * 275.00379 * 13 3 2 15 15 O 1.21613 * 120.00252 * 359.97438 * 14 13 3 16 16 C 1.47382 * 119.99755 * 179.72668 * 14 13 3 17 17 C 1.39252 * 120.83443 * 0.26820 * 16 14 13 18 18 N 1.31912 * 120.96926 * 180.02562 * 17 16 14 19 19 C 1.31914 * 122.71593 * 359.97438 * 18 17 16 20 20 C 1.38687 * 120.80171 * 0.02562 * 19 18 17 21 21 N 1.37751 * 134.31127 * 179.97438 * 20 19 18 22 22 H 0.96999 * 125.55748 * 0.06264 * 21 20 19 23 23 C 1.36561 * 108.88068 * 180.02562 * 21 20 19 24 24 C 1.34643 * 109.66200 * 0.02562 * 23 21 20 25 25 C 1.40993 * 118.83371 * 359.71778 * 20 19 18 26 26 H 1.08999 * 109.47709 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47093 * 299.99673 * 1 2 3 28 28 H 1.09006 * 109.47239 * 59.99796 * 1 2 3 29 29 H 1.09005 * 109.46881 * 239.99816 * 2 1 3 30 30 H 1.08998 * 109.47044 * 120.00435 * 2 1 3 31 31 H 0.97000 * 120.00330 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99792 * 94.99947 * 13 3 2 33 33 H 1.08005 * 119.51630 * 359.97438 * 17 16 14 34 34 H 1.08006 * 119.60177 * 180.02562 * 19 18 17 35 35 H 1.08003 * 125.16595 * 180.02562 * 23 21 20 36 36 H 1.08005 * 126.08962 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1432 0.8782 -1.2280 8 7 3.4061 0.3373 -2.1734 9 14 6.0050 0.8797 -1.3811 10 1 6.5966 0.1449 -0.2344 11 1 6.3978 0.2164 -2.6503 12 1 6.5005 2.2796 -1.3808 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6644 1.3670 15 8 -0.3413 2.6326 0.4316 16 6 0.0431 3.3180 2.6284 17 6 0.9186 3.3648 3.7102 18 7 0.5702 3.9487 4.8406 19 6 -0.6076 4.5161 5.0166 20 6 -1.5513 4.5234 4.0002 21 7 -2.8310 5.0186 3.8789 22 1 -3.3200 5.4931 4.5692 23 6 -3.2985 4.7331 2.6280 24 6 -2.3574 4.0655 1.9340 25 6 -1.2288 3.9178 2.7685 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 3.8292 -0.0612 -2.9500 32 1 2.2720 2.1230 1.9978 33 1 1.8970 2.9158 3.6228 34 1 -0.8400 4.9805 5.9636 35 1 -4.2748 5.0019 2.2524 36 1 -2.4478 3.7113 0.9177 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879483208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:55 Heat of formation + Delta-G solvation = 30.927686 kcal Electronic energy + Delta-G solvation = -20628.317248 eV Core-core repulsion = 17498.955740 eV Total energy + Delta-G solvation = -3129.361508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.73464 -39.00977 -37.76995 -35.02995 -32.65435 -32.23698 -30.98327 -29.93332 -29.41481 -26.90034 -24.40508 -22.95711 -22.48921 -21.17387 -20.44981 -19.38353 -18.43099 -17.26161 -16.64173 -16.02887 -15.26241 -15.06050 -14.82449 -14.69980 -14.28137 -14.17315 -13.25542 -13.05454 -12.72483 -12.65682 -12.38355 -11.95761 -11.90627 -11.47407 -11.20966 -10.96591 -10.79080 -10.31108 -10.14411 -10.00526 -9.91533 -9.57038 -9.02795 -8.86710 -8.65936 -8.45871 -7.98638 -7.71754 -6.08942 -4.18217 0.62940 1.45304 2.71956 2.90418 3.28933 3.33969 3.35388 3.44934 4.04680 4.27449 4.39057 4.47575 4.74988 4.83102 4.92212 5.19642 5.22606 5.31611 5.58048 5.72555 5.97806 6.25735 6.43765 6.46611 6.51148 6.65185 6.72004 6.86868 7.09762 7.24047 7.29068 7.40415 7.47951 7.65846 7.77328 7.93809 8.00264 8.21348 8.69154 8.81027 9.15066 9.48920 10.96347 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028543 B = 0.004707 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.746063 B = 5946.578524 C = 6545.496083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.548 3.452 15 O -0.539 6.539 16 C -0.126 4.126 17 C 0.089 3.911 18 N -0.472 5.472 19 C 0.124 3.876 20 C 0.018 3.982 21 N -0.581 5.581 22 H 0.419 0.581 23 C 0.056 3.944 24 C -0.183 4.183 25 C -0.026 4.026 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.176 0.824 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.264 7.835 12.351 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.332 3.668 15 O -0.418 6.418 16 C -0.132 4.132 17 C -0.063 4.063 18 N -0.180 5.180 19 C -0.043 4.043 20 C -0.091 4.091 21 N -0.184 5.184 22 H 0.256 0.744 23 C -0.074 4.074 24 C -0.207 4.207 25 C -0.038 4.038 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.193 0.807 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.188 7.716 12.172 18.245 hybrid contribution 0.444 0.183 -0.113 0.494 sum -10.744 7.900 12.060 17.980 Atomic orbital electron populations 1.21841 0.98343 0.98011 1.01268 1.21936 0.92635 0.99738 1.02314 1.18812 0.94228 0.89186 0.80817 0.93127 1.21200 0.90679 1.39093 1.06340 0.92079 1.24871 0.98558 0.94785 0.95357 1.69884 1.35197 1.37566 1.09329 0.86520 0.84915 0.78317 0.77424 1.20137 1.21177 1.20191 1.46471 1.14290 1.55481 1.18637 1.17808 0.83057 0.79408 0.86481 1.90718 1.51418 1.59829 1.39820 1.20828 0.94067 1.01575 0.96684 1.22694 0.99262 0.96752 0.87633 1.67540 1.16660 1.09480 1.24369 1.21807 0.87810 0.97906 0.96765 1.19365 0.87988 1.03705 0.98081 1.41711 1.12420 1.50162 1.14104 0.74374 1.22159 1.00048 1.00820 0.84348 1.20964 0.92201 1.05759 1.01809 1.18226 0.94137 0.98028 0.93382 0.95919 0.94248 0.93117 0.88251 0.94996 0.92535 0.77944 0.82226 0.83003 0.80682 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.15 0.32 -2.79 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.68 11.29 55.43 0.63 -24.05 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.70 -14.86 4.98 -56.02 -0.28 -15.14 16 14 C 0.55 11.40 6.34 -12.54 -0.08 11.32 16 15 O -0.54 -12.57 12.36 5.27 0.07 -12.51 16 16 C -0.13 -2.21 5.91 -104.63 -0.62 -2.83 16 17 C 0.09 1.38 10.71 -17.14 -0.18 1.20 16 18 N -0.47 -6.87 10.30 -12.85 -0.13 -7.00 16 19 C 0.12 1.51 11.21 -17.35 -0.19 1.31 16 20 C 0.02 0.23 7.31 -84.00 -0.61 -0.38 16 21 N -0.58 -5.25 6.13 -10.63 -0.07 -5.31 16 22 H 0.42 2.08 8.96 -40.82 -0.37 1.71 16 23 C 0.06 0.55 11.83 -16.72 -0.20 0.35 16 24 C -0.18 -2.64 10.09 -39.75 -0.40 -3.04 16 25 C -0.03 -0.42 6.04 -106.58 -0.64 -1.06 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.88 5.65 -51.93 -0.29 0.58 16 28 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 29 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.39 7.18 6.61 -40.82 -0.27 6.91 16 33 H 0.16 2.22 6.42 -52.48 -0.34 1.89 16 34 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.16 2.53 7.19 -52.48 -0.38 2.16 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -32.24 300.24 -7.58 -39.82 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -3.99 Total: 9.25 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -3.31 Total: -5.21 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.15 Total: -51.51 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.24 -7.58 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879483208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.746 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds