Wall clock time and date at job start Mon Mar 30 2020 01:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 C 1.52999 * 109.47050 * 59.99993 * 3 2 1 5 5 C 1.47199 * 109.47338 * 299.99665 * 3 2 1 6 6 N 3.43550 * 83.99749 * 321.44535 * 2 1 3 7 7 C 1.50707 * 109.47230 * 179.97438 * 3 2 1 8 8 O 1.21274 * 119.99847 * 0.02562 * 7 3 2 9 9 N 1.34770 * 119.99853 * 180.02562 * 7 3 2 10 10 C 1.39264 * 119.99764 * 184.85200 * 9 7 3 11 11 C 1.39675 * 119.57599 * 174.56680 * 10 9 7 12 12 C 1.38660 * 119.49638 * 179.97438 * 11 10 9 13 13 C 1.38345 * 118.66865 * 0.02562 * 12 11 10 14 14 C 1.40579 * 119.13251 * 359.97438 * 13 12 11 15 15 C 1.41333 * 119.78887 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99984 * 0.02562 * 15 14 13 17 17 C 1.40029 * 120.00204 * 180.02562 * 15 14 13 18 18 N 1.30745 * 119.99520 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00298 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47289 * 59.99681 * 19 17 15 21 21 H 1.48500 * 109.47149 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.46553 * 299.99658 * 19 17 15 23 23 N 1.31907 * 119.57537 * 354.29124 * 10 9 7 24 24 H 1.08994 * 109.47499 * 300.00115 * 1 2 3 25 25 H 1.09005 * 109.46673 * 60.00273 * 1 2 3 26 26 H 1.09003 * 109.47045 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47853 * 239.99637 * 2 1 3 28 28 H 1.09010 * 109.47048 * 120.00010 * 2 1 3 29 29 H 1.09003 * 109.47155 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.46789 * 299.99848 * 4 3 2 31 31 H 1.08997 * 109.47321 * 59.99755 * 4 3 2 32 32 H 0.97000 * 120.00092 * 5.11886 * 9 7 3 33 33 H 1.07997 * 120.25451 * 359.95306 * 11 10 9 34 34 H 1.08000 * 120.66358 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.43140 * 179.97438 * 13 12 11 36 36 H 0.97000 * 119.99639 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5494 2.1364 -1.2019 6 7 1.1707 2.6719 -2.1295 7 6 3.5471 1.4425 0.0006 8 8 4.1534 0.3922 0.0006 9 7 4.2209 2.6097 0.0013 10 6 5.6098 2.6119 -0.1002 11 6 6.2909 3.8260 -0.2135 12 6 7.6738 3.8263 -0.3138 13 6 8.3406 2.6142 -0.2990 14 6 7.5982 1.4262 -0.1825 15 6 8.2652 0.1802 -0.1665 16 1 9.3418 0.1430 -0.2430 17 6 7.5301 -1.0060 -0.0512 18 7 6.2268 -0.9609 0.0420 19 14 8.4116 -2.6528 -0.0292 20 1 9.3480 -2.6977 1.1224 21 1 7.4150 -3.7460 0.1008 22 1 9.1726 -2.8236 -1.2930 23 7 6.2657 1.4675 -0.0825 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.8930 3.1915 1.2490 30 1 0.4399 2.1637 1.2492 31 1 1.8933 1.6499 2.1392 32 1 3.7387 3.4480 0.0763 33 1 5.7445 4.7576 -0.2232 34 1 8.2195 4.7542 -0.4018 35 1 9.4174 2.5813 -0.3758 36 1 5.7176 -1.7826 0.1222 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472601.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:27 Heat of formation + Delta-G solvation = 42.170702 kcal Electronic energy + Delta-G solvation = -20926.879009 eV Core-core repulsion = 17798.005035 eV Total energy + Delta-G solvation = -3128.873975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04309 -38.10935 -36.64366 -34.77341 -34.18863 -33.09886 -30.44653 -30.18886 -28.77150 -25.94098 -25.48580 -22.75125 -21.80540 -21.29824 -19.92722 -18.15123 -17.10170 -16.36303 -15.86479 -14.89976 -14.62118 -14.46390 -14.24614 -14.19747 -13.79768 -13.56957 -12.99003 -12.90362 -12.55839 -12.54273 -12.25067 -12.03405 -12.00904 -11.72658 -11.48582 -11.15657 -11.03816 -10.99123 -10.76028 -10.69029 -10.50443 -9.98852 -9.74954 -9.12000 -9.05890 -8.01190 -7.29660 -7.03827 -6.18978 -4.43435 2.55596 2.76044 2.78883 3.02644 3.14741 3.16855 3.24138 3.45469 3.66290 4.03553 4.04387 4.67398 4.79144 4.90642 4.94910 5.23432 5.38825 5.45437 5.61429 5.73526 5.85981 5.99331 6.01870 6.08655 6.10907 6.32739 6.44510 6.60311 6.77284 6.81249 7.19164 7.48732 7.52740 7.56017 7.77599 7.96743 8.13766 8.38408 8.67152 8.99164 9.07882 10.17918 10.44047 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.006903 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.491058 B = 4055.417843 C = 5364.321725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.097 4.097 3 C 0.016 3.984 4 C -0.141 4.141 5 C 0.221 3.779 6 N -0.426 5.426 7 C 0.486 3.514 8 O -0.387 6.387 9 N -0.661 5.661 10 C 0.371 3.629 11 C -0.355 4.355 12 C -0.036 4.036 13 C -0.303 4.303 14 C 0.271 3.729 15 C -0.424 4.424 16 H 0.082 0.918 17 C 0.059 3.941 18 N -0.659 5.659 19 Si 0.897 3.103 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.267 1.267 23 N -0.474 5.474 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.399 0.601 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.676 1.619 3.834 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.136 4.136 3 C 0.009 3.991 4 C -0.199 4.199 5 C -0.097 4.097 6 N -0.102 5.102 7 C 0.264 3.736 8 O -0.248 6.248 9 N -0.308 5.308 10 C 0.133 3.867 11 C -0.381 4.381 12 C -0.060 4.060 13 C -0.326 4.326 14 C 0.146 3.854 15 C -0.454 4.454 16 H 0.100 0.900 17 C -0.170 4.170 18 N -0.278 5.278 19 Si 0.721 3.279 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.192 1.192 23 N -0.193 5.193 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.233 0.767 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.480 0.621 2.509 10.794 hybrid contribution 0.724 0.529 0.215 0.923 sum -9.756 1.151 2.724 10.194 Atomic orbital electron populations 1.21924 0.95350 1.02322 1.01875 1.21413 0.95323 0.91421 1.05428 1.18794 0.94840 0.96976 0.88509 1.21928 1.02250 1.00534 0.95215 1.28676 0.93404 0.93458 0.94191 1.81180 1.09198 1.09324 1.10455 1.20010 0.87000 0.85747 0.80858 1.91191 1.66232 1.28702 1.38705 1.43350 1.05588 1.08603 1.73250 1.18560 0.82848 0.91246 0.94095 1.20493 0.94837 0.95241 1.27487 1.20567 0.93255 0.96467 0.95697 1.21633 0.98785 0.93491 1.18696 1.18360 0.86891 0.92180 0.87933 1.19555 0.94378 0.89459 1.42037 0.89963 1.26157 0.95097 1.00620 0.95132 1.70286 1.04961 1.28644 1.23879 0.86563 0.80043 0.81580 0.79670 1.19157 1.20337 1.19201 1.68657 1.08348 1.21859 1.20407 0.91954 0.93147 0.91829 0.90178 0.88779 0.91487 0.90625 0.89651 0.76750 0.89075 0.88558 0.88496 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.31 37.16 0.35 -1.16 16 2 C -0.10 -1.20 4.25 -26.73 -0.11 -1.31 16 3 C 0.02 0.22 0.59 -158.45 -0.09 0.13 16 4 C -0.14 -1.38 7.97 37.16 0.30 -1.08 16 5 C 0.22 3.28 12.41 -20.76 -0.26 3.02 16 6 N -0.43 -7.09 18.54 42.15 0.78 -6.31 16 7 C 0.49 9.08 6.41 -10.99 -0.07 9.01 16 8 O -0.39 -8.94 11.76 5.56 0.07 -8.87 16 9 N -0.66 -12.61 5.18 -11.40 -0.06 -12.67 16 10 C 0.37 8.84 7.43 -154.98 -1.15 7.69 16 11 C -0.35 -7.90 9.96 -38.89 -0.39 -8.28 16 12 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 13 C -0.30 -7.52 9.83 -38.66 -0.38 -7.90 16 14 C 0.27 7.47 6.55 -85.00 -0.56 6.92 16 15 C -0.42 -11.41 9.14 -37.73 -0.34 -11.75 16 16 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 17 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 18 N -0.66 -17.50 9.00 55.55 0.50 -17.00 16 19 Si 0.90 18.77 29.56 -169.99 -5.02 13.75 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 N -0.47 -12.93 5.74 -10.25 -0.06 -12.99 16 24 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 25 H 0.05 0.52 7.23 -51.93 -0.38 0.15 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 28 H 0.09 1.15 8.10 -51.92 -0.42 0.72 16 29 H 0.07 0.61 7.46 -51.93 -0.39 0.22 16 30 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 6.09 7.92 -40.82 -0.32 5.77 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.27 6.76 8.29 -40.82 -0.34 6.42 16 LS Contribution 308.83 15.07 4.65 4.65 Total: -1.00 -31.80 308.83 -6.61 -38.41 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.25 Total: 5.54 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -3.21 Total: -4.51 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 1.16 Total: -48.96 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.07 Total: -8.87 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.80 -6.61 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472601.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.577 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds