Wall clock time and date at job start Mon Mar 30 2020 01:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 C 1.52999 * 109.47050 * 59.99993 * 3 2 1 5 5 C 1.47199 * 109.47338 * 299.99665 * 3 2 1 6 6 N 3.43550 * 83.99749 * 321.44535 * 2 1 3 7 7 C 1.50707 * 109.47230 * 179.97438 * 3 2 1 8 8 O 1.21274 * 119.99847 * 0.02562 * 7 3 2 9 9 N 1.34770 * 119.99853 * 180.02562 * 7 3 2 10 10 C 1.39264 * 119.99764 * 184.85200 * 9 7 3 11 11 C 1.39675 * 119.57599 * 174.56680 * 10 9 7 12 12 C 1.38660 * 119.49638 * 179.97438 * 11 10 9 13 13 C 1.38345 * 118.66865 * 0.02562 * 12 11 10 14 14 C 1.40579 * 119.13251 * 359.97438 * 13 12 11 15 15 C 1.41333 * 119.78887 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99984 * 0.02562 * 15 14 13 17 17 C 1.40029 * 120.00204 * 180.02562 * 15 14 13 18 18 N 1.30745 * 119.99520 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00298 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47289 * 59.99681 * 19 17 15 21 21 H 1.48500 * 109.47149 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.46553 * 299.99658 * 19 17 15 23 23 N 1.31907 * 119.57537 * 354.29124 * 10 9 7 24 24 H 1.08994 * 109.47499 * 300.00115 * 1 2 3 25 25 H 1.09005 * 109.46673 * 60.00273 * 1 2 3 26 26 H 1.09003 * 109.47045 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47853 * 239.99637 * 2 1 3 28 28 H 1.09010 * 109.47048 * 120.00010 * 2 1 3 29 29 H 1.09003 * 109.47155 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.46789 * 299.99848 * 4 3 2 31 31 H 1.08997 * 109.47321 * 59.99755 * 4 3 2 32 32 H 0.97000 * 120.00092 * 5.11886 * 9 7 3 33 33 H 1.07997 * 120.25451 * 359.95306 * 11 10 9 34 34 H 1.08000 * 120.66358 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.43140 * 179.97438 * 13 12 11 36 36 H 0.97000 * 119.99639 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5494 2.1364 -1.2019 6 7 1.1707 2.6719 -2.1295 7 6 3.5471 1.4425 0.0006 8 8 4.1534 0.3922 0.0006 9 7 4.2209 2.6097 0.0013 10 6 5.6098 2.6119 -0.1002 11 6 6.2909 3.8260 -0.2135 12 6 7.6738 3.8263 -0.3138 13 6 8.3406 2.6142 -0.2990 14 6 7.5982 1.4262 -0.1825 15 6 8.2652 0.1802 -0.1665 16 1 9.3418 0.1430 -0.2430 17 6 7.5301 -1.0060 -0.0512 18 7 6.2268 -0.9609 0.0420 19 14 8.4116 -2.6528 -0.0292 20 1 9.3480 -2.6977 1.1224 21 1 7.4150 -3.7460 0.1008 22 1 9.1726 -2.8236 -1.2930 23 7 6.2657 1.4675 -0.0825 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.8930 3.1915 1.2490 30 1 0.4399 2.1637 1.2492 31 1 1.8933 1.6499 2.1392 32 1 3.7387 3.4480 0.0763 33 1 5.7445 4.7576 -0.2232 34 1 8.2195 4.7542 -0.4018 35 1 9.4174 2.5813 -0.3758 36 1 5.7176 -1.7826 0.1222 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472601.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:27 Heat of formation + Delta-G solvation = 23.134332 kcal Electronic energy + Delta-G solvation = -20927.704488 eV Core-core repulsion = 17798.005035 eV Total energy + Delta-G solvation = -3129.699454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50394 -39.79085 -38.04892 -36.13355 -35.73327 -34.89488 -32.23893 -31.52272 -30.28410 -27.50611 -26.76279 -24.24745 -23.24841 -22.88635 -21.51998 -19.84313 -18.64137 -18.04835 -17.10055 -16.50049 -16.28488 -15.90174 -15.73482 -15.58287 -15.26879 -14.91429 -14.65082 -14.29790 -13.82746 -13.75995 -13.64288 -13.48458 -13.03286 -12.85901 -12.74477 -12.72911 -12.56675 -12.51299 -12.31445 -11.98809 -11.78061 -11.68508 -11.50832 -10.86992 -10.67963 -9.89824 -9.13225 -8.85537 -8.05190 -6.40582 0.87497 1.22692 1.41839 1.42980 1.53583 1.55383 1.56633 1.96337 2.25027 2.28828 2.77826 3.01636 3.57042 3.73908 3.82788 4.05686 4.36353 4.38929 4.51001 4.67439 4.71045 4.80139 4.87600 4.93310 4.96296 5.03181 5.08984 5.17921 5.24663 5.30458 5.46359 5.67716 5.80583 5.92781 6.14769 6.32126 6.34746 6.66652 6.81281 7.07880 7.52597 8.31468 8.57809 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.006903 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.491058 B = 4055.417843 C = 5364.321725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C 0.033 3.967 4 C -0.140 4.140 5 C 0.237 3.763 6 N -0.455 5.455 7 C 0.479 3.521 8 O -0.434 6.434 9 N -0.652 5.652 10 C 0.351 3.649 11 C -0.349 4.349 12 C -0.034 4.034 13 C -0.328 4.328 14 C 0.238 3.762 15 C -0.464 4.464 16 H 0.085 0.915 17 C 0.014 3.986 18 N -0.689 5.689 19 Si 0.973 3.027 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.265 1.265 23 N -0.505 5.505 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.417 0.583 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.998 2.437 4.622 12.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C 0.025 3.975 4 C -0.198 4.198 5 C -0.081 4.081 6 N -0.130 5.130 7 C 0.260 3.740 8 O -0.297 6.297 9 N -0.301 5.301 10 C 0.112 3.888 11 C -0.374 4.374 12 C -0.058 4.058 13 C -0.351 4.351 14 C 0.112 3.888 15 C -0.494 4.494 16 H 0.103 0.897 17 C -0.212 4.212 18 N -0.308 5.308 19 Si 0.794 3.206 20 H -0.185 1.185 21 H -0.195 1.195 22 H -0.190 1.190 23 N -0.225 5.225 24 H 0.106 0.894 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.254 0.746 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.122 0.878 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.840 1.494 3.299 12.381 hybrid contribution 1.099 0.430 -0.045 1.182 sum -10.740 1.925 3.254 11.386 Atomic orbital electron populations 1.21892 0.92644 1.03472 1.02647 1.21431 0.97495 0.90304 1.04265 1.18760 0.90684 0.98235 0.89803 1.22051 1.04142 1.00589 0.93031 1.28821 0.92698 0.92660 0.93878 1.81201 1.10135 1.10544 1.11160 1.20866 0.89117 0.84838 0.79195 1.91188 1.67923 1.30209 1.40423 1.43365 1.04064 1.09970 1.72726 1.19060 0.84791 0.91247 0.93700 1.20960 0.95151 0.96146 1.25154 1.21019 0.93718 0.97129 0.93950 1.21810 0.99333 0.93911 1.20054 1.18842 0.87759 0.93498 0.88676 1.19874 0.94790 0.90549 1.44222 0.89726 1.26962 0.95845 1.03949 0.94410 1.70452 1.06237 1.29456 1.24639 0.85412 0.78777 0.76726 0.79670 1.18490 1.19537 1.18956 1.68635 1.08535 1.23824 1.21470 0.89413 0.93971 0.90649 0.92809 0.88683 0.90409 0.87630 0.88942 0.74585 0.85422 0.84705 0.87774 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.31 71.98 0.67 -1.82 16 2 C -0.10 -2.29 4.25 30.59 0.13 -2.16 16 3 C 0.03 0.83 0.59 -54.73 -0.03 0.80 16 4 C -0.14 -2.31 7.97 71.98 0.57 -1.74 16 5 C 0.24 6.70 12.41 89.44 1.11 7.81 16 6 N -0.45 -14.58 18.54 20.01 0.37 -14.21 16 7 C 0.48 17.89 6.41 87.66 0.56 18.46 16 8 O -0.43 -20.64 11.76 -3.01 -0.04 -20.68 16 9 N -0.65 -24.39 5.18 -308.37 -1.60 -25.99 16 10 C 0.35 16.67 7.43 133.25 0.99 17.66 16 11 C -0.35 -14.89 9.96 22.72 0.23 -14.66 16 12 C -0.03 -1.48 10.15 22.40 0.23 -1.25 16 13 C -0.33 -16.47 9.83 22.87 0.22 -16.25 16 14 C 0.24 13.52 6.55 40.19 0.26 13.78 16 15 C -0.46 -25.94 9.14 23.47 0.21 -25.73 16 16 H 0.08 4.45 7.85 -2.91 -0.02 4.42 16 17 C 0.01 0.75 5.50 85.29 0.47 1.22 16 18 N -0.69 -37.98 9.00 21.84 0.20 -37.79 16 19 Si 0.97 39.59 29.56 68.60 2.03 41.62 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 N -0.50 -28.30 5.74 -186.35 -1.07 -29.37 16 24 H 0.09 1.03 6.43 -2.39 -0.02 1.01 16 25 H 0.04 0.78 7.23 -2.38 -0.02 0.77 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 28 H 0.09 2.26 8.10 -2.38 -0.02 2.24 16 29 H 0.08 1.14 7.46 -2.39 -0.02 1.12 16 30 H 0.11 1.17 6.43 -2.38 -0.02 1.15 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.42 11.92 7.92 -92.71 -0.73 11.19 16 33 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 36 H 0.27 14.07 8.29 -92.71 -0.77 13.31 16 Total: -1.00 -72.14 308.83 5.90 -66.24 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.38 Total: 24.05 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.63 Total: -3.87 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -2.10 Total: -107.36 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.04 Total: -20.68 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -72.14 5.90 -66.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472601.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.372 kcal (2) G-P(sol) polarization free energy of solvation -72.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds