Wall clock time and date at job start Mon Mar 30 2020 01:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38688 * 119.43554 * 2 1 4 4 C 1.38334 * 119.49015 * 179.97438 * 3 2 1 5 5 C 1.39420 * 118.44219 * 0.02678 * 4 3 2 6 6 N 1.39027 * 120.56685 * 179.97438 * 5 4 3 7 7 C 1.47902 * 111.00074 * 115.98826 * 6 5 4 8 8 C 1.53995 * 107.05776 * 214.16037 * 7 6 5 9 9 C 1.54595 * 105.13996 * 1.22276 * 8 7 6 10 10 O 1.42895 * 110.72384 * 263.42354 * 9 8 7 11 11 C 1.50698 * 110.72236 * 140.31669 * 9 8 7 12 12 H 1.07997 * 120.00091 * 241.45730 * 11 9 8 13 13 C 1.37883 * 119.99873 * 61.45454 * 11 9 8 14 14 N 1.31512 * 119.99870 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99726 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47186 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46977 * 120.00314 * 15 13 11 18 18 H 1.48497 * 109.46688 * 239.99897 * 15 13 11 19 19 C 1.48534 * 110.99674 * 358.59344 * 6 5 4 20 20 C 1.40206 * 118.87408 * 359.97438 * 5 4 3 21 21 C 1.43195 * 119.80982 * 180.02562 * 20 5 4 22 22 N 4.69730 * 132.31488 * 179.97438 * 2 1 3 23 23 N 1.31440 * 119.44356 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47596 * 269.99755 * 1 2 3 25 25 H 1.08996 * 109.47284 * 30.00558 * 1 2 3 26 26 H 1.09007 * 109.46817 * 150.00223 * 1 2 3 27 27 H 1.08000 * 120.25911 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.77739 * 180.29439 * 4 3 2 29 29 H 1.09004 * 109.91949 * 333.51219 * 7 6 5 30 30 H 1.08995 * 109.91596 * 94.80543 * 7 6 5 31 31 H 1.09000 * 110.30960 * 120.14501 * 8 7 6 32 32 H 1.09004 * 110.30569 * 242.20695 * 8 7 6 33 33 H 0.96704 * 114.00389 * 298.54384 * 10 9 8 34 34 H 0.97006 * 119.99609 * 179.97438 * 14 13 11 35 35 H 1.08998 * 110.66933 * 278.15701 * 19 6 5 36 36 H 1.09002 * 110.66819 * 41.28598 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2079 0.0000 4 6 3.5720 1.2092 0.0005 5 6 4.2371 -0.0161 0.0005 6 7 5.6265 -0.0663 0.0005 7 6 6.1344 -0.6902 1.2416 8 6 7.4598 0.0120 1.5905 9 6 7.6495 1.0845 0.4934 10 8 8.5042 0.6006 -0.5444 11 6 8.1978 2.3586 1.0824 12 1 7.6262 3.2727 1.0190 13 6 9.4294 2.3574 1.7025 14 7 10.1252 1.2441 1.7803 15 14 10.1088 3.9366 2.4333 16 1 9.1391 5.0400 2.2156 17 1 10.3311 3.7524 3.8899 18 1 11.3965 4.2728 1.7746 19 6 6.2085 1.2998 -0.0335 20 6 3.4812 -1.1969 0.0005 21 6 4.1437 -2.4663 0.0010 22 7 4.6693 -3.4734 0.0016 23 7 2.1532 -1.1446 0.0005 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5138 27 1 1.6436 2.1403 -0.0004 28 1 4.1237 2.1376 0.0053 29 1 5.4158 -0.5492 2.0491 30 1 6.3093 -1.7535 1.0780 31 1 7.3920 0.4821 2.5716 32 1 8.2830 -0.7022 1.5700 33 1 9.3972 0.3784 -0.2471 34 1 10.9918 1.2433 2.2162 35 1 6.2252 1.6856 -1.0528 36 1 5.6547 1.9704 0.6237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882515979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:46 Heat of formation + Delta-G solvation = 30.636080 kcal Electronic energy + Delta-G solvation = -20788.587471 eV Core-core repulsion = 17659.213318 eV Total energy + Delta-G solvation = -3129.374153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86522 -38.50476 -36.35426 -35.27876 -32.58267 -32.34106 -32.24554 -29.57704 -28.54151 -26.99554 -24.82158 -24.36292 -22.32189 -20.63327 -19.68556 -18.96537 -17.46078 -16.46438 -16.38826 -15.47688 -14.94696 -14.76027 -14.56202 -14.06495 -13.75544 -13.41898 -13.35512 -12.97029 -12.76613 -12.70384 -12.42903 -12.33408 -12.19140 -11.86206 -11.60389 -11.42199 -11.21010 -10.88162 -10.69893 -10.50382 -10.18785 -9.85600 -9.72053 -9.36864 -9.27426 -8.72599 -8.26373 -7.80207 -6.33197 -4.42773 0.64031 1.18300 2.79077 2.96099 3.14107 3.23683 3.26115 3.64113 3.86561 4.08718 4.24237 4.58218 4.74448 4.80920 4.94368 5.07940 5.25834 5.39150 5.46207 5.48194 5.61617 5.66128 5.80888 5.83515 5.93778 6.05046 6.12441 6.28794 6.42647 6.59501 6.77941 7.01479 7.25336 7.28511 7.36504 7.63401 7.67550 7.82052 7.98249 8.59762 9.26694 9.39556 10.74122 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026170 B = 0.005134 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.662596 B = 5452.721827 C = 6176.694330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.093 3.907 3 C -0.115 4.115 4 C -0.129 4.129 5 C 0.121 3.879 6 N -0.466 5.466 7 C 0.039 3.961 8 C -0.129 4.129 9 C 0.258 3.742 10 O -0.580 6.580 11 C -0.541 4.541 12 H 0.064 0.936 13 C 0.073 3.927 14 N -0.892 5.892 15 Si 0.901 3.099 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.045 3.955 20 C 0.157 3.843 21 C 0.282 3.718 22 N -0.402 5.402 23 N -0.433 5.433 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.141 0.859 28 H 0.155 0.845 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.381 0.619 34 H 0.268 0.732 35 H 0.085 0.915 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.484 1.978 -0.714 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.050 4.050 3 C -0.136 4.136 4 C -0.157 4.157 5 C 0.014 3.986 6 N -0.178 5.178 7 C -0.085 4.085 8 C -0.168 4.168 9 C 0.218 3.782 10 O -0.388 6.388 11 C -0.580 4.580 12 H 0.082 0.918 13 C -0.130 4.130 14 N -0.530 5.530 15 Si 0.728 3.272 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.080 4.080 20 C 0.017 3.983 21 C -0.034 4.034 22 N -0.079 5.079 23 N -0.144 5.144 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.159 0.841 28 H 0.173 0.827 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.230 0.770 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.243 -0.668 -1.443 14.332 hybrid contribution 1.042 2.247 1.334 2.813 sum -13.201 1.579 -0.108 13.296 Atomic orbital electron populations 1.20636 0.88332 1.03404 1.03005 1.21063 0.96900 0.87502 0.99524 1.22076 0.94302 0.99309 0.97885 1.21976 0.94699 0.98206 1.00858 1.20126 0.91321 0.92679 0.94426 1.61423 1.01327 1.20376 1.34714 1.23123 0.98419 0.99648 0.87292 1.23018 0.93344 0.99098 1.01297 1.19319 0.85022 0.90691 0.83208 1.86138 1.27175 1.87345 1.38149 1.21552 1.03960 0.95312 1.37149 0.91780 1.25004 0.96492 0.96693 0.94835 1.69732 1.13441 1.26197 1.43675 0.86394 0.79055 0.83015 0.78695 1.19606 1.20842 1.20723 1.23570 0.96411 0.86066 1.01987 1.15946 0.88440 0.86140 1.07821 1.24692 0.92928 0.91740 0.94077 1.81173 1.08256 1.10571 1.07908 1.67213 1.06909 1.30250 1.09988 0.90590 0.90651 0.90591 0.84078 0.82714 0.93744 0.90926 0.91185 0.90776 0.76957 0.92192 0.89640 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.16 36.01 0.37 -0.38 16 2 C 0.09 1.07 6.78 -82.59 -0.56 0.51 16 3 C -0.11 -1.20 9.73 -39.38 -0.38 -1.59 16 4 C -0.13 -1.68 8.96 -39.11 -0.35 -2.04 16 5 C 0.12 1.95 5.29 -83.42 -0.44 1.51 16 6 N -0.47 -8.77 4.99 -166.79 -0.83 -9.60 16 7 C 0.04 0.76 5.51 -2.75 -0.02 0.74 16 8 C -0.13 -2.83 5.26 -25.37 -0.13 -2.97 16 9 C 0.26 6.00 0.95 -89.91 -0.09 5.92 16 10 O -0.58 -14.63 13.10 -35.23 -0.46 -15.09 16 11 C -0.54 -13.47 8.14 -34.44 -0.28 -13.75 16 12 H 0.06 1.56 7.78 -52.49 -0.41 1.15 16 13 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 14 N -0.89 -22.82 11.00 55.43 0.61 -22.21 16 15 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.05 0.88 4.65 -1.90 -0.01 0.87 16 20 C 0.16 2.55 6.50 -84.74 -0.55 2.00 16 21 C 0.28 5.05 13.19 -22.48 -0.30 4.76 16 22 N -0.40 -7.65 18.33 41.84 0.77 -6.89 16 23 N -0.43 -6.35 10.18 -7.17 -0.07 -6.42 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 26 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.16 1.86 5.76 -52.48 -0.30 1.56 16 29 H 0.04 0.79 7.75 -51.93 -0.40 0.38 16 30 H 0.07 1.44 6.97 -51.93 -0.36 1.08 16 31 H 0.07 1.58 7.84 -51.93 -0.41 1.17 16 32 H 0.07 1.74 7.99 -51.93 -0.41 1.33 16 33 H 0.38 9.74 7.46 45.56 0.34 10.08 16 34 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 35 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.07 1.20 5.99 -51.93 -0.31 0.89 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -27.96 305.24 -6.76 -34.72 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -3.51 Total: 8.99 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -2.83 Total: -2.68 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.47 Total: -45.11 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.46 Total: -15.09 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.96 -6.76 -34.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882515979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.355 kcal (2) G-P(sol) polarization free energy of solvation -27.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds