Wall clock time and date at job start Mon Mar 30 2020 01:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38688 * 119.43554 * 2 1 4 4 C 1.38334 * 119.49015 * 179.97438 * 3 2 1 5 5 C 1.39420 * 118.44219 * 0.02678 * 4 3 2 6 6 N 1.39027 * 120.56685 * 179.97438 * 5 4 3 7 7 C 1.47902 * 111.00074 * 115.98826 * 6 5 4 8 8 C 1.53995 * 107.05776 * 214.16037 * 7 6 5 9 9 C 1.54595 * 105.13996 * 1.22276 * 8 7 6 10 10 O 1.42895 * 110.72384 * 263.42354 * 9 8 7 11 11 C 1.50698 * 110.72236 * 140.31669 * 9 8 7 12 12 H 1.07997 * 120.00091 * 241.45730 * 11 9 8 13 13 C 1.37883 * 119.99873 * 61.45454 * 11 9 8 14 14 N 1.31512 * 119.99870 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99726 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47186 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46977 * 120.00314 * 15 13 11 18 18 H 1.48497 * 109.46688 * 239.99897 * 15 13 11 19 19 C 1.48534 * 110.99674 * 358.59344 * 6 5 4 20 20 C 1.40206 * 118.87408 * 359.97438 * 5 4 3 21 21 C 1.43195 * 119.80982 * 180.02562 * 20 5 4 22 22 N 4.69730 * 132.31488 * 179.97438 * 2 1 3 23 23 N 1.31440 * 119.44356 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47596 * 269.99755 * 1 2 3 25 25 H 1.08996 * 109.47284 * 30.00558 * 1 2 3 26 26 H 1.09007 * 109.46817 * 150.00223 * 1 2 3 27 27 H 1.08000 * 120.25911 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.77739 * 180.29439 * 4 3 2 29 29 H 1.09004 * 109.91949 * 333.51219 * 7 6 5 30 30 H 1.08995 * 109.91596 * 94.80543 * 7 6 5 31 31 H 1.09000 * 110.30960 * 120.14501 * 8 7 6 32 32 H 1.09004 * 110.30569 * 242.20695 * 8 7 6 33 33 H 0.96704 * 114.00389 * 298.54384 * 10 9 8 34 34 H 0.97006 * 119.99609 * 179.97438 * 14 13 11 35 35 H 1.08998 * 110.66933 * 278.15701 * 19 6 5 36 36 H 1.09002 * 110.66819 * 41.28598 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2079 0.0000 4 6 3.5720 1.2092 0.0005 5 6 4.2371 -0.0161 0.0005 6 7 5.6265 -0.0663 0.0005 7 6 6.1344 -0.6902 1.2416 8 6 7.4598 0.0120 1.5905 9 6 7.6495 1.0845 0.4934 10 8 8.5042 0.6006 -0.5444 11 6 8.1978 2.3586 1.0824 12 1 7.6262 3.2727 1.0190 13 6 9.4294 2.3574 1.7025 14 7 10.1252 1.2441 1.7803 15 14 10.1088 3.9366 2.4333 16 1 9.1391 5.0400 2.2156 17 1 10.3311 3.7524 3.8899 18 1 11.3965 4.2728 1.7746 19 6 6.2085 1.2998 -0.0335 20 6 3.4812 -1.1969 0.0005 21 6 4.1437 -2.4663 0.0010 22 7 4.6693 -3.4734 0.0016 23 7 2.1532 -1.1446 0.0005 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5138 27 1 1.6436 2.1403 -0.0004 28 1 4.1237 2.1376 0.0053 29 1 5.4158 -0.5492 2.0491 30 1 6.3093 -1.7535 1.0780 31 1 7.3920 0.4821 2.5716 32 1 8.2830 -0.7022 1.5700 33 1 9.3972 0.3784 -0.2471 34 1 10.9918 1.2433 2.2162 35 1 6.2252 1.6856 -1.0528 36 1 5.6547 1.9704 0.6237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882515979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:46 Heat of formation + Delta-G solvation = 10.637367 kcal Electronic energy + Delta-G solvation = -20789.454680 eV Core-core repulsion = 17659.213318 eV Total energy + Delta-G solvation = -3130.241363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.04297 -39.92832 -37.73174 -36.92945 -34.18144 -33.65224 -33.57502 -30.90723 -30.13119 -28.22524 -26.45674 -25.48301 -23.59601 -22.10208 -21.25922 -20.16180 -19.16153 -17.88116 -17.58080 -17.10483 -16.66755 -15.93275 -15.83222 -15.59626 -14.93084 -14.75810 -14.52059 -14.42507 -14.27149 -14.11993 -13.81021 -13.56544 -13.26159 -13.09237 -12.93199 -12.88854 -12.78619 -12.58095 -12.44482 -12.20916 -11.90079 -11.18784 -11.08112 -10.72847 -10.61632 -10.42696 -10.14733 -9.06990 -8.22130 -6.38338 -0.45516 0.15816 1.42159 1.45950 1.46616 1.56041 1.76823 2.37830 2.47023 2.62710 2.87715 3.04195 3.62258 3.66785 3.74350 3.82828 4.00293 4.05506 4.20038 4.26265 4.41272 4.51608 4.60393 4.80559 4.91470 4.95258 4.99133 5.04646 5.10560 5.21769 5.35109 5.49829 5.55275 5.56960 5.78312 6.01079 6.13628 6.30216 6.68962 6.79291 7.33394 7.41925 8.84018 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026170 B = 0.005134 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.662596 B = 5452.721827 C = 6176.694330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.099 3.901 3 C -0.091 4.091 4 C -0.128 4.128 5 C 0.099 3.901 6 N -0.480 5.480 7 C 0.051 3.949 8 C -0.119 4.119 9 C 0.239 3.761 10 O -0.592 6.592 11 C -0.556 4.556 12 H 0.069 0.931 13 C 0.029 3.971 14 N -0.915 5.915 15 Si 0.961 3.039 16 H -0.263 1.263 17 H -0.282 1.282 18 H -0.285 1.285 19 C 0.057 3.943 20 C 0.136 3.864 21 C 0.290 3.710 22 N -0.440 5.440 23 N -0.453 5.453 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.191 0.809 28 H 0.168 0.832 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.373 0.627 34 H 0.268 0.732 35 H 0.085 0.915 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.415 4.467 -0.590 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.044 4.044 3 C -0.111 4.111 4 C -0.156 4.156 5 C -0.007 4.007 6 N -0.194 5.194 7 C -0.073 4.073 8 C -0.158 4.158 9 C 0.199 3.801 10 O -0.399 6.399 11 C -0.595 4.595 12 H 0.087 0.913 13 C -0.171 4.171 14 N -0.554 5.554 15 Si 0.787 3.213 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.211 1.211 19 C -0.068 4.068 20 C -0.002 4.002 21 C -0.026 4.026 22 N -0.118 5.118 23 N -0.164 5.164 24 H 0.109 0.891 25 H 0.126 0.874 26 H 0.090 0.910 27 H 0.208 0.792 28 H 0.185 0.815 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.222 0.778 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.201 1.813 -1.328 17.347 hybrid contribution 1.780 1.525 1.286 2.673 sum -15.421 3.338 -0.042 15.779 Atomic orbital electron populations 1.20814 0.85240 1.04866 1.04398 1.21907 0.98809 0.87008 0.96720 1.22580 0.93201 1.00875 0.94491 1.22199 0.96008 0.97207 1.00188 1.20165 0.89892 0.94016 0.96580 1.61354 1.03453 1.19884 1.34740 1.22897 0.97298 0.98620 0.88500 1.22791 0.94066 0.98394 1.00556 1.19633 0.86641 0.90431 0.83425 1.86136 1.27021 1.87529 1.39264 1.21866 1.04357 0.96056 1.37180 0.91322 1.25720 0.96890 0.99269 0.95271 1.69842 1.13589 1.27757 1.44196 0.85461 0.78205 0.79954 0.77708 1.18662 1.20789 1.21079 1.23435 0.94176 0.87027 1.02180 1.15903 0.89274 0.85231 1.09766 1.25199 0.92295 0.92023 0.93044 1.81151 1.09325 1.11769 1.09528 1.67278 1.05980 1.32139 1.11043 0.89052 0.87377 0.91026 0.79214 0.81471 0.92281 0.92160 0.92233 0.93429 0.77820 0.92307 0.89674 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.16 71.24 0.72 -0.29 16 2 C 0.10 1.89 6.78 42.73 0.29 2.18 16 3 C -0.09 -1.44 9.73 22.40 0.22 -1.22 16 4 C -0.13 -2.90 8.96 22.58 0.20 -2.70 16 5 C 0.10 3.05 5.29 38.76 0.20 3.26 16 6 N -0.48 -17.98 4.99 -681.61 -3.40 -21.38 16 7 C 0.05 2.02 5.51 86.45 0.48 2.50 16 8 C -0.12 -5.41 5.26 31.47 0.17 -5.25 16 9 C 0.24 11.24 0.95 -10.33 -0.01 11.23 16 10 O -0.59 -30.78 13.10 -148.98 -1.95 -32.73 16 11 C -0.56 -27.64 8.14 25.60 0.21 -27.43 16 12 H 0.07 3.26 7.78 -2.91 -0.02 3.24 16 13 C 0.03 1.47 5.28 84.66 0.45 1.91 16 14 N -0.91 -47.86 11.00 21.45 0.24 -47.62 16 15 Si 0.96 39.99 29.54 68.60 2.03 42.02 16 16 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 17 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 19 C 0.06 2.19 4.65 86.65 0.40 2.59 16 20 C 0.14 4.33 6.50 40.70 0.26 4.60 16 21 C 0.29 10.61 13.19 88.33 1.16 11.77 16 22 N -0.44 -17.38 18.33 19.00 0.35 -17.03 16 23 N -0.45 -12.40 10.18 -176.60 -1.80 -14.20 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.11 0.49 8.07 -2.39 -0.02 0.48 16 26 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 28 H 0.17 3.35 5.76 -2.91 -0.02 3.33 16 29 H 0.06 2.10 7.75 -2.38 -0.02 2.08 16 30 H 0.06 2.49 6.97 -2.39 -0.02 2.48 16 31 H 0.06 2.76 7.84 -2.39 -0.02 2.74 16 32 H 0.05 2.36 7.99 -2.38 -0.02 2.34 16 33 H 0.37 19.98 7.46 -74.05 -0.55 19.43 16 34 H 0.27 13.43 8.31 -92.70 -0.77 12.66 16 35 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.09 2.96 5.99 -2.39 -0.01 2.95 16 Total: -1.00 -62.74 305.24 0.79 -61.95 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.57 Total: 25.84 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 4.76 Total: 3.16 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -4.61 Total: -100.23 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -1.95 Total: -32.73 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -62.74 0.79 -61.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882515979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.587 kcal (2) G-P(sol) polarization free energy of solvation -62.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds