Wall clock time and date at job start Mon Mar 30 2020 01:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.30171 * 126.80164 * 269.68876 * 3 2 1 5 5 O 1.20925 * 111.59960 * 179.79857 * 4 3 2 6 6 C 1.34038 * 111.57104 * 0.48120 * 5 4 3 7 7 C 1.35456 * 106.44203 * 359.71288 * 6 5 4 8 8 C 1.50700 * 128.00416 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47435 * 260.03911 * 8 7 6 10 10 C 1.38812 * 120.00125 * 179.97438 * 9 8 7 11 11 C 1.39796 * 119.58868 * 0.02562 * 10 9 8 12 12 C 1.38593 * 119.49470 * 179.97438 * 11 10 9 13 13 C 1.38396 * 118.68216 * 359.97438 * 12 11 10 14 14 C 1.40562 * 119.14361 * 0.02562 * 13 12 11 15 15 C 1.41319 * 119.77802 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00209 * 359.97438 * 15 14 13 17 17 C 1.40024 * 119.99280 * 180.02562 * 15 14 13 18 18 N 1.30738 * 120.00597 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99573 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46936 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47241 * 119.99687 * 19 17 15 22 22 H 1.48502 * 109.46800 * 239.99775 * 19 17 15 23 23 N 1.31964 * 119.58251 * 179.72422 * 10 9 8 24 24 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 25 25 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 27 27 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 28 28 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 29 29 H 1.08005 * 126.78339 * 179.68754 * 6 5 4 30 30 H 1.09005 * 109.47481 * 20.04490 * 8 7 6 31 31 H 1.09006 * 109.47028 * 140.04201 * 8 7 6 32 32 H 0.97000 * 119.99103 * 0.02562 * 9 8 7 33 33 H 1.08003 * 120.25430 * 359.95093 * 11 10 9 34 34 H 1.07997 * 120.66217 * 180.02562 * 12 11 10 35 35 H 1.07996 * 120.42390 * 179.97438 * 13 12 11 36 36 H 0.97003 * 120.00448 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2976 2.1542 -1.0423 5 8 2.6812 3.2563 -0.7252 6 6 2.7308 3.3965 0.6069 7 6 2.3147 2.2193 1.1321 8 6 2.1836 1.8468 2.5864 9 7 3.3467 1.0550 2.9946 10 6 3.4496 0.5949 4.3002 11 6 2.4380 0.8916 5.2184 12 6 2.5425 0.4308 6.5213 13 6 3.6534 -0.3149 6.8750 14 6 4.6368 -0.5799 5.9063 15 6 5.7764 -1.3405 6.2527 16 1 5.8897 -1.7156 7.2591 17 6 6.7590 -1.6067 5.2914 18 7 6.6221 -1.1521 4.0732 19 14 8.2657 -2.6114 5.7495 20 1 8.1826 -3.0044 7.1791 21 1 8.3240 -3.8302 4.9032 22 1 9.4885 -1.7977 5.5305 23 7 4.4982 -0.1222 4.6575 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.0416 4.2745 1.1536 30 1 2.1306 2.7527 3.1903 31 1 1.2761 1.2603 2.7309 32 1 4.0452 0.8530 2.3526 33 1 1.5819 1.4758 4.9148 34 1 1.7719 0.6486 7.2459 35 1 3.7636 -0.6876 7.8826 36 1 7.3027 -1.3369 3.4072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883357165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:44 Heat of formation + Delta-G solvation = 92.340452 kcal Electronic energy + Delta-G solvation = -20164.770739 eV Core-core repulsion = 17038.072288 eV Total energy + Delta-G solvation = -3126.698451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.93098 -38.31914 -36.30573 -34.67218 -33.35686 -32.06053 -31.08729 -30.37789 -28.98379 -26.03696 -25.34703 -24.41954 -21.87956 -21.24943 -20.89473 -20.32995 -17.64184 -17.45865 -17.28040 -16.31429 -15.19338 -14.88281 -14.74974 -14.40137 -14.18731 -13.77985 -13.39824 -13.22363 -13.03054 -12.67048 -12.42968 -12.05233 -11.78770 -11.59220 -11.47821 -11.22340 -10.98416 -10.84722 -10.63351 -10.50254 -10.00360 -9.84848 -9.54502 -9.48861 -8.92534 -7.93305 -7.53009 -6.55999 -6.34231 -4.48942 1.47063 2.16045 2.85219 3.11208 3.15415 3.21504 3.24177 3.28058 3.97628 4.09950 4.36960 4.52576 4.82083 4.92867 5.03050 5.22080 5.23872 5.35617 5.60114 5.76270 5.82821 5.92664 5.97871 6.03624 6.09776 6.12968 6.20551 6.53835 6.82715 6.87277 6.91173 7.23345 7.56774 7.78421 7.89236 8.14987 8.26712 8.33183 8.64353 8.78599 9.09533 10.22593 10.38628 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.004635 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.335672 B = 6039.270698 C = 6657.318135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.038 3.962 4 N -0.370 5.370 5 O 0.094 5.906 6 C -0.043 4.043 7 C -0.207 4.207 8 C 0.220 3.780 9 N -0.735 5.735 10 C 0.412 3.588 11 C -0.368 4.368 12 C -0.031 4.031 13 C -0.316 4.316 14 C 0.292 3.708 15 C -0.434 4.434 16 H 0.084 0.916 17 C 0.071 3.929 18 N -0.715 5.715 19 Si 0.904 3.096 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.274 1.274 23 N -0.531 5.531 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.218 0.782 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.274 5.341 -6.689 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.122 4.122 4 N -0.076 5.076 5 O 0.030 5.970 6 C -0.126 4.126 7 C -0.212 4.212 8 C 0.094 3.906 9 N -0.373 5.373 10 C 0.172 3.828 11 C -0.394 4.394 12 C -0.056 4.056 13 C -0.339 4.339 14 C 0.165 3.835 15 C -0.466 4.466 16 H 0.102 0.898 17 C -0.154 4.154 18 N -0.337 5.337 19 Si 0.728 3.272 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.199 1.199 23 N -0.252 5.252 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.234 0.766 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.763 5.052 -8.782 12.182 hybrid contribution 0.282 -0.228 1.437 1.482 sum -6.481 4.824 -7.345 10.919 Atomic orbital electron populations 1.21696 0.93997 1.02327 1.02123 1.19992 0.96325 0.88177 1.04342 1.23537 1.01162 0.99228 0.88224 1.73827 1.16729 0.92801 1.24219 1.84810 1.62550 1.26594 1.23019 1.25882 1.01810 1.01324 0.83536 1.21435 1.07638 0.94300 0.97803 1.19143 0.90166 0.95467 0.85852 1.44115 1.23666 1.59859 1.09668 1.18472 0.90521 0.89840 0.83967 1.20589 1.03521 1.19593 0.95742 1.20592 0.95772 0.94693 0.94513 1.21545 0.99537 1.12672 1.00107 1.18201 0.91119 0.88412 0.85730 1.19628 1.01801 1.27721 0.97417 0.89827 1.26048 0.99362 0.95339 0.94624 1.70154 1.30471 1.30949 1.02114 0.86334 0.81060 0.79785 0.79986 1.18414 1.19943 1.19950 1.68201 1.20885 1.17106 1.19027 0.92736 0.91614 0.92219 0.90221 0.88815 0.76598 0.91760 0.91668 0.76907 0.89210 0.88926 0.88705 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 37.16 0.37 -1.16 16 2 C -0.05 -0.63 6.44 -27.88 -0.18 -0.81 16 3 C 0.04 0.54 6.58 -82.10 -0.54 0.00 16 4 N -0.37 -5.42 12.07 33.42 0.40 -5.02 16 5 O 0.09 1.22 11.20 17.18 0.19 1.41 16 6 C -0.04 -0.49 12.26 29.74 0.36 -0.12 16 7 C -0.21 -2.78 5.69 -104.42 -0.59 -3.37 16 8 C 0.22 3.26 5.37 -5.19 -0.03 3.24 16 9 N -0.74 -14.23 5.71 -61.57 -0.35 -14.58 16 10 C 0.41 9.76 7.65 -155.33 -1.19 8.58 16 11 C -0.37 -8.21 9.34 -38.87 -0.36 -8.57 16 12 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 13 C -0.32 -7.88 9.83 -38.65 -0.38 -8.26 16 14 C 0.29 8.05 6.55 -85.00 -0.56 7.49 16 15 C -0.43 -11.67 9.14 -37.74 -0.34 -12.02 16 16 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 17 C 0.07 1.82 5.50 -17.35 -0.10 1.72 16 18 N -0.72 -18.95 11.46 55.55 0.64 -18.31 16 19 Si 0.90 18.66 29.56 -169.99 -5.02 13.64 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 N -0.53 -14.45 7.89 -10.33 -0.08 -14.53 16 24 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.22 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.06 0.90 7.92 -51.93 -0.41 0.49 16 31 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 32 H 0.40 7.98 8.58 -40.82 -0.35 7.63 16 33 H 0.09 1.75 6.68 -52.48 -0.35 1.40 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 36 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -30.22 315.73 -7.86 -38.08 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.45 Total: 8.96 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -3.94 Total: -14.41 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.61 Total: -52.44 kcal Atomic # 8 Polarization: 1.22 SS G_CDS: 0.19 Total: 1.41 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.22 -7.86 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883357165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.416 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds