Wall clock time and date at job start Mon Mar 30 2020 01:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.30171 * 126.80164 * 269.68876 * 3 2 1 5 5 O 1.20925 * 111.59960 * 179.79857 * 4 3 2 6 6 C 1.34038 * 111.57104 * 0.48120 * 5 4 3 7 7 C 1.35456 * 106.44203 * 359.71288 * 6 5 4 8 8 C 1.50700 * 128.00416 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47435 * 260.03911 * 8 7 6 10 10 C 1.38812 * 120.00125 * 179.97438 * 9 8 7 11 11 C 1.39796 * 119.58868 * 0.02562 * 10 9 8 12 12 C 1.38593 * 119.49470 * 179.97438 * 11 10 9 13 13 C 1.38396 * 118.68216 * 359.97438 * 12 11 10 14 14 C 1.40562 * 119.14361 * 0.02562 * 13 12 11 15 15 C 1.41319 * 119.77802 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00209 * 359.97438 * 15 14 13 17 17 C 1.40024 * 119.99280 * 180.02562 * 15 14 13 18 18 N 1.30738 * 120.00597 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99573 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46936 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47241 * 119.99687 * 19 17 15 22 22 H 1.48502 * 109.46800 * 239.99775 * 19 17 15 23 23 N 1.31964 * 119.58251 * 179.72422 * 10 9 8 24 24 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 25 25 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 27 27 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 28 28 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 29 29 H 1.08005 * 126.78339 * 179.68754 * 6 5 4 30 30 H 1.09005 * 109.47481 * 20.04490 * 8 7 6 31 31 H 1.09006 * 109.47028 * 140.04201 * 8 7 6 32 32 H 0.97000 * 119.99103 * 0.02562 * 9 8 7 33 33 H 1.08003 * 120.25430 * 359.95093 * 11 10 9 34 34 H 1.07997 * 120.66217 * 180.02562 * 12 11 10 35 35 H 1.07996 * 120.42390 * 179.97438 * 13 12 11 36 36 H 0.97003 * 120.00448 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2976 2.1542 -1.0423 5 8 2.6812 3.2563 -0.7252 6 6 2.7308 3.3965 0.6069 7 6 2.3147 2.2193 1.1321 8 6 2.1836 1.8468 2.5864 9 7 3.3467 1.0550 2.9946 10 6 3.4496 0.5949 4.3002 11 6 2.4380 0.8916 5.2184 12 6 2.5425 0.4308 6.5213 13 6 3.6534 -0.3149 6.8750 14 6 4.6368 -0.5799 5.9063 15 6 5.7764 -1.3405 6.2527 16 1 5.8897 -1.7156 7.2591 17 6 6.7590 -1.6067 5.2914 18 7 6.6221 -1.1521 4.0732 19 14 8.2657 -2.6114 5.7495 20 1 8.1826 -3.0044 7.1791 21 1 8.3240 -3.8302 4.9032 22 1 9.4885 -1.7977 5.5305 23 7 4.4982 -0.1222 4.6575 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.0416 4.2745 1.1536 30 1 2.1306 2.7527 3.1903 31 1 1.2761 1.2603 2.7309 32 1 4.0452 0.8530 2.3526 33 1 1.5819 1.4758 4.9148 34 1 1.7719 0.6486 7.2459 35 1 3.7636 -0.6876 7.8826 36 1 7.3027 -1.3369 3.4072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883357165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:43 Heat of formation + Delta-G solvation = 74.874177 kcal Electronic energy + Delta-G solvation = -20165.528134 eV Core-core repulsion = 17038.072288 eV Total energy + Delta-G solvation = -3127.455846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.97598 -40.10491 -37.58300 -36.04048 -35.07892 -33.31734 -32.21197 -32.08724 -30.68158 -27.49503 -27.10044 -25.38948 -23.48335 -22.74578 -21.98515 -21.86155 -19.28250 -18.59904 -18.56872 -17.86183 -16.68461 -16.45117 -16.12969 -15.91476 -15.49011 -15.00777 -14.95415 -14.73022 -14.30555 -13.95256 -13.74137 -13.55963 -13.28770 -12.87372 -12.71211 -12.57953 -12.51873 -12.45570 -12.22091 -11.88023 -11.72097 -11.29710 -10.94569 -10.65679 -10.54037 -9.80999 -9.42109 -8.28799 -8.21510 -6.45953 0.50169 1.07427 1.08442 1.37849 1.41937 1.56658 1.57846 2.25411 2.31885 2.81900 2.94143 3.13673 3.53175 3.87629 3.97927 4.10568 4.29127 4.30361 4.37449 4.42632 4.57566 4.76624 4.82500 4.84699 4.95581 5.00336 5.01618 5.03888 5.07703 5.14204 5.25653 5.37860 5.74028 5.99588 6.09191 6.24487 6.56568 6.84046 6.93866 7.22705 7.27167 8.36473 8.52550 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.004635 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.335672 B = 6039.270698 C = 6657.318135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C 0.030 3.970 4 N -0.394 5.394 5 O 0.092 5.908 6 C -0.017 4.017 7 C -0.229 4.229 8 C 0.224 3.776 9 N -0.730 5.730 10 C 0.397 3.603 11 C -0.363 4.363 12 C -0.029 4.029 13 C -0.344 4.344 14 C 0.260 3.740 15 C -0.472 4.472 16 H 0.085 0.915 17 C 0.028 3.972 18 N -0.752 5.752 19 Si 0.983 3.017 20 H -0.255 1.255 21 H -0.268 1.268 22 H -0.268 1.268 23 N -0.566 5.566 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.258 0.742 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.390 0.610 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 6.310 -6.688 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.130 4.130 4 N -0.101 5.101 5 O 0.030 5.970 6 C -0.099 4.099 7 C -0.234 4.234 8 C 0.099 3.901 9 N -0.365 5.365 10 C 0.156 3.844 11 C -0.389 4.389 12 C -0.053 4.053 13 C -0.367 4.367 14 C 0.133 3.867 15 C -0.504 4.504 16 H 0.103 0.897 17 C -0.194 4.194 18 N -0.375 5.375 19 Si 0.803 3.197 20 H -0.178 1.178 21 H -0.193 1.193 22 H -0.193 1.193 23 N -0.289 5.289 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.274 0.726 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.119 0.881 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.454 6.054 -8.805 13.028 hybrid contribution 0.353 -0.408 1.379 1.481 sum -7.101 5.646 -7.426 11.724 Atomic orbital electron populations 1.21656 0.92391 1.03237 1.02201 1.20004 0.97708 0.87643 1.03546 1.23785 1.00972 0.99704 0.88513 1.73830 1.17953 0.93483 1.24789 1.84792 1.62249 1.26051 1.23883 1.26589 0.98826 1.01699 0.82753 1.21314 1.09847 0.95304 0.96887 1.19248 0.88392 0.95425 0.86992 1.44290 1.24665 1.59578 1.07966 1.18899 0.90257 0.89441 0.85795 1.20969 1.03814 1.18779 0.95309 1.21018 0.95634 0.93170 0.95497 1.21695 1.00443 1.14381 1.00168 1.18648 0.92212 0.89152 0.86695 1.19958 1.03081 1.29260 0.98134 0.89667 1.26913 1.02151 0.96115 0.94221 1.70251 1.31775 1.32283 1.03160 0.85155 0.76717 0.77985 0.79793 1.17824 1.19317 1.19255 1.68161 1.22814 1.18570 1.19350 0.92523 0.90331 0.92171 0.90183 0.90381 0.72616 0.89993 0.91313 0.77698 0.85856 0.85217 0.88139 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.89 71.98 0.71 -2.05 16 2 C -0.05 -1.27 6.44 29.85 0.19 -1.07 16 3 C 0.03 0.80 6.58 43.58 0.29 1.09 16 4 N -0.39 -11.12 12.07 -49.57 -0.60 -11.71 16 5 O 0.09 2.23 11.20 71.65 0.80 3.03 16 6 C -0.02 -0.33 12.26 67.18 0.82 0.50 16 7 C -0.23 -5.70 5.69 -19.73 -0.11 -5.81 16 8 C 0.22 6.17 5.37 85.63 0.46 6.63 16 9 N -0.73 -27.70 5.71 -348.70 -1.99 -29.70 16 10 C 0.40 18.67 7.65 133.42 1.02 19.69 16 11 C -0.36 -15.47 9.34 22.73 0.21 -15.25 16 12 C -0.03 -1.26 10.15 22.39 0.23 -1.04 16 13 C -0.34 -17.29 9.83 22.87 0.22 -17.07 16 14 C 0.26 14.71 6.55 40.18 0.26 14.97 16 15 C -0.47 -26.22 9.14 23.46 0.21 -26.00 16 16 H 0.09 4.47 7.85 -2.91 -0.02 4.44 16 17 C 0.03 1.43 5.50 85.29 0.47 1.90 16 18 N -0.75 -40.91 11.46 21.84 0.25 -40.66 16 19 Si 0.98 38.86 29.56 68.60 2.03 40.89 16 20 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 22 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 23 N -0.57 -31.49 7.89 -186.58 -1.47 -32.96 16 24 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.26 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.08 2.01 7.92 -2.38 -0.02 1.99 16 31 H 0.07 1.87 7.92 -2.38 -0.02 1.85 16 32 H 0.39 15.77 8.58 -92.71 -0.80 14.97 16 33 H 0.12 4.34 6.68 -2.91 -0.02 4.32 16 34 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.27 13.53 8.29 -92.71 -0.77 12.76 16 Total: -1.00 -66.98 315.73 4.32 -62.66 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.31 Total: 31.98 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 4.99 Total: -23.53 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -3.81 Total: -115.03 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.80 Total: 3.03 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -66.98 4.32 -62.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883357165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.532 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds