Wall clock time and date at job start Mon Mar 30 2020 00:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00143 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00144 * 3 2 1 5 5 H 1.48497 * 109.46972 * 29.99724 * 3 2 1 6 6 H 1.48494 * 109.47103 * 150.00340 * 3 2 1 7 7 C 1.38955 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00288 * 180.02562 * 13 12 10 15 15 O 1.21587 * 120.00069 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00510 * 180.02562 * 14 13 12 17 17 C 1.47029 * 125.64492 * 0.02562 * 16 14 13 18 18 C 1.54319 * 107.26920 * 178.90604 * 17 16 14 19 19 C 1.55157 * 102.94552 * 337.81105 * 18 17 16 20 20 H 1.09003 * 111.00275 * 277.42487 * 19 18 17 21 21 C 1.52999 * 111.00395 * 153.61650 * 19 18 17 22 22 F 1.39894 * 109.47317 * 64.99785 * 21 19 18 23 23 C 1.47423 * 125.65229 * 179.71797 * 16 14 13 24 24 H 0.97000 * 119.99478 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 26 26 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 27 27 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 28 28 H 0.97001 * 120.00220 * 359.97438 * 13 12 10 29 29 H 1.08999 * 109.88221 * 298.32771 * 17 16 14 30 30 H 1.09000 * 109.88148 * 59.49227 * 17 16 14 31 31 H 1.09011 * 110.72032 * 96.17414 * 18 17 16 32 32 H 1.09000 * 110.72322 * 219.26682 * 18 17 16 33 33 H 1.09003 * 109.46632 * 184.99934 * 21 19 18 34 34 H 1.08996 * 109.47002 * 304.99286 * 21 19 18 35 35 H 1.08999 * 110.36541 * 322.99810 * 23 16 14 36 36 H 1.08997 * 110.36757 * 85.32074 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3707 -0.0011 11 8 3.4472 -3.4211 0.0044 12 6 5.5606 -2.3707 -0.0079 13 7 6.0489 -3.7519 -0.0071 14 6 7.3740 -3.9983 -0.0121 15 8 8.1641 -3.0742 -0.0168 16 7 7.8232 -5.2690 -0.0119 17 6 6.9824 -6.4751 -0.0071 18 6 7.9289 -7.6935 -0.0369 19 6 9.2366 -7.1034 -0.6278 20 1 9.1897 -7.0618 -1.7160 21 6 10.4568 -7.9019 -0.1646 22 9 10.3891 -9.1995 -0.6828 23 6 9.2390 -5.6798 -0.0229 24 1 -0.4849 0.8401 -0.0004 25 1 3.8649 -0.3634 -0.0052 26 1 5.9199 -1.8593 -0.9009 27 1 5.9280 -1.8546 0.8791 28 1 5.4186 -4.4892 -0.0023 29 1 6.3747 -6.4997 0.8974 30 1 6.3403 -6.4828 -0.8879 31 1 8.0984 -8.0749 0.9701 32 1 7.5298 -8.4762 -0.6821 33 1 11.3653 -7.4156 -0.5200 34 1 10.4703 -7.9457 0.9244 35 1 9.8253 -5.0037 -0.6452 36 1 9.6354 -5.7021 0.9922 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883695862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:53 Heat of formation + Delta-G solvation = -113.385517 kcal Electronic energy + Delta-G solvation = -20591.671241 eV Core-core repulsion = 17025.282617 eV Total energy + Delta-G solvation = -3566.388623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.96904 -40.32202 -38.65877 -37.64783 -34.53567 -33.79282 -32.63839 -31.79697 -29.87491 -28.07538 -25.92426 -24.27466 -23.16921 -20.96194 -19.90957 -19.66578 -18.83439 -17.97966 -17.09067 -16.11938 -16.04601 -15.96243 -15.41481 -15.31256 -15.04834 -14.61197 -14.21570 -14.06467 -13.80654 -13.22771 -13.04986 -13.00086 -12.52143 -12.41079 -12.15633 -12.02793 -11.81791 -11.43266 -11.24218 -11.09247 -11.00597 -10.64953 -10.15946 -10.06816 -9.70779 -9.04918 -8.78218 -8.56743 -8.31368 -6.41736 -3.94330 2.52828 2.99218 3.03956 3.12078 3.24507 3.56083 3.84634 4.01569 4.03524 4.17084 4.20296 4.56591 4.59217 4.68824 4.84961 4.97302 5.08980 5.13320 5.26926 5.39185 5.50224 5.52221 5.62756 5.66851 5.78066 5.82532 5.83905 6.08606 6.60840 7.04862 7.43894 7.98889 8.05580 8.43208 8.66454 8.80668 9.28825 9.62381 10.70419 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.050881 B = 0.003092 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.167570 B = 9052.278549 C = 9534.582498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.580 6.580 12 C 0.125 3.875 13 N -0.722 5.722 14 C 0.724 3.276 15 O -0.595 6.595 16 N -0.639 5.639 17 C 0.097 3.903 18 C -0.122 4.122 19 C -0.140 4.140 20 H 0.097 0.903 21 C 0.075 3.925 22 F -0.215 7.215 23 C 0.136 3.864 24 H 0.276 0.724 25 H 0.375 0.625 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.408 0.592 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.176 -12.032 0.161 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.003 4.003 13 N -0.379 5.379 14 C 0.426 3.574 15 O -0.474 6.474 16 N -0.378 5.378 17 C -0.027 4.027 18 C -0.160 4.160 19 C -0.159 4.159 20 H 0.116 0.884 21 C 0.019 3.981 22 F -0.196 7.196 23 C 0.012 3.988 24 H 0.086 0.914 25 H 0.208 0.792 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.246 0.754 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.044 -11.834 0.159 22.422 hybrid contribution 0.115 1.009 -0.017 1.016 sum 19.159 -10.825 0.142 22.006 Atomic orbital electron populations 1.69621 1.05721 1.27824 1.48165 1.25070 0.95538 0.98187 0.97119 0.86666 0.79932 0.83728 0.79154 1.19380 1.19984 1.19181 1.19439 0.78942 0.96797 1.48679 0.86087 1.42112 1.07693 1.06121 1.65428 1.19641 0.88051 0.84882 0.84989 1.90534 1.69242 1.30933 1.55682 1.20824 0.93411 0.82777 1.03297 1.44757 1.05056 1.09387 1.78737 1.15306 0.82648 0.81450 0.77996 1.90908 1.55306 1.42196 1.59020 1.47411 1.07252 1.03897 1.79233 1.22053 0.94066 0.84097 1.02450 1.22655 0.94153 0.96977 1.02220 1.22987 0.95388 0.95249 1.02311 0.88434 1.21851 0.98526 0.78411 0.99280 1.92777 1.97682 1.40094 1.89078 1.21826 0.82501 0.93534 1.00901 0.91378 0.79211 0.89818 0.89819 0.75368 0.90986 0.91082 0.90178 0.89414 0.90241 0.90294 0.89916 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.93 13.96 55.50 0.77 -24.15 16 2 C 0.05 1.21 5.50 -17.46 -0.10 1.11 16 3 Si 0.88 18.97 27.73 -169.99 -4.71 14.25 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 7 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 9 N -0.58 -13.39 5.09 -10.96 -0.06 -13.44 16 10 C 0.44 9.67 7.85 -10.98 -0.09 9.58 16 11 O -0.58 -14.62 15.24 5.54 0.08 -14.54 16 12 C 0.13 2.22 6.15 -5.20 -0.03 2.18 16 13 N -0.72 -12.01 5.49 -66.42 -0.36 -12.38 16 14 C 0.72 11.75 8.49 -86.92 -0.74 11.01 16 15 O -0.60 -11.40 16.60 5.29 0.09 -11.31 16 16 N -0.64 -7.85 3.33 -176.38 -0.59 -8.44 16 17 C 0.10 0.93 6.15 -3.06 -0.02 0.91 16 18 C -0.12 -0.87 6.32 -24.90 -0.16 -1.02 16 19 C -0.14 -0.97 3.38 -88.59 -0.30 -1.27 16 20 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 21 C 0.07 0.42 6.98 37.16 0.26 0.68 16 22 F -0.22 -1.81 17.24 2.25 0.04 -1.78 16 23 C 0.14 1.26 6.37 -2.65 -0.02 1.24 16 24 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.37 7.68 5.77 -40.82 -0.24 7.45 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.41 6.71 6.42 -40.82 -0.26 6.45 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.50 8.03 -51.92 -0.42 0.08 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.34 8.13 -51.93 -0.42 -0.08 16 35 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 36 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 LS Contribution 309.88 15.07 4.67 4.67 Total: -1.00 -33.44 309.88 -6.09 -39.53 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -4.69 Total: 11.84 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: -1.34 Total: 15.74 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.23 Total: -58.41 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.17 Total: -25.85 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.44 -6.09 -39.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883695862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.854 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds