Wall clock time and date at job start Mon Mar 30 2020 00:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00143 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00144 * 3 2 1 5 5 H 1.48497 * 109.46972 * 29.99724 * 3 2 1 6 6 H 1.48494 * 109.47103 * 150.00340 * 3 2 1 7 7 C 1.38955 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00288 * 180.02562 * 13 12 10 15 15 O 1.21587 * 120.00069 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00510 * 180.02562 * 14 13 12 17 17 C 1.47029 * 125.64492 * 0.02562 * 16 14 13 18 18 C 1.54319 * 107.26920 * 178.90604 * 17 16 14 19 19 C 1.55157 * 102.94552 * 337.81105 * 18 17 16 20 20 H 1.09003 * 111.00275 * 277.42487 * 19 18 17 21 21 C 1.52999 * 111.00395 * 153.61650 * 19 18 17 22 22 F 1.39894 * 109.47317 * 64.99785 * 21 19 18 23 23 C 1.47423 * 125.65229 * 179.71797 * 16 14 13 24 24 H 0.97000 * 119.99478 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 26 26 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 27 27 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 28 28 H 0.97001 * 120.00220 * 359.97438 * 13 12 10 29 29 H 1.08999 * 109.88221 * 298.32771 * 17 16 14 30 30 H 1.09000 * 109.88148 * 59.49227 * 17 16 14 31 31 H 1.09011 * 110.72032 * 96.17414 * 18 17 16 32 32 H 1.09000 * 110.72322 * 219.26682 * 18 17 16 33 33 H 1.09003 * 109.46632 * 184.99934 * 21 19 18 34 34 H 1.08996 * 109.47002 * 304.99286 * 21 19 18 35 35 H 1.08999 * 110.36541 * 322.99810 * 23 16 14 36 36 H 1.08997 * 110.36757 * 85.32074 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3707 -0.0011 11 8 3.4472 -3.4211 0.0044 12 6 5.5606 -2.3707 -0.0079 13 7 6.0489 -3.7519 -0.0071 14 6 7.3740 -3.9983 -0.0121 15 8 8.1641 -3.0742 -0.0168 16 7 7.8232 -5.2690 -0.0119 17 6 6.9824 -6.4751 -0.0071 18 6 7.9289 -7.6935 -0.0369 19 6 9.2366 -7.1034 -0.6278 20 1 9.1897 -7.0618 -1.7160 21 6 10.4568 -7.9019 -0.1646 22 9 10.3891 -9.1995 -0.6828 23 6 9.2390 -5.6798 -0.0229 24 1 -0.4849 0.8401 -0.0004 25 1 3.8649 -0.3634 -0.0052 26 1 5.9199 -1.8593 -0.9009 27 1 5.9280 -1.8546 0.8791 28 1 5.4186 -4.4892 -0.0023 29 1 6.3747 -6.4997 0.8974 30 1 6.3403 -6.4828 -0.8879 31 1 8.0984 -8.0749 0.9701 32 1 7.5298 -8.4762 -0.6821 33 1 11.3653 -7.4156 -0.5200 34 1 10.4703 -7.9457 0.9244 35 1 9.8253 -5.0037 -0.6452 36 1 9.6354 -5.7021 0.9922 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883695862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:53 Heat of formation + Delta-G solvation = -138.707044 kcal Electronic energy + Delta-G solvation = -20592.769264 eV Core-core repulsion = 17025.282617 eV Total energy + Delta-G solvation = -3567.486647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.51314 -41.47583 -40.32279 -38.73289 -36.30340 -35.37420 -33.86734 -33.47305 -30.58963 -29.52183 -26.98626 -25.81233 -24.09205 -21.61386 -21.45202 -21.08476 -20.56585 -19.29940 -17.87833 -17.54720 -17.10177 -16.80994 -16.74349 -16.53152 -16.34193 -15.90162 -15.55295 -15.10828 -14.89113 -14.55530 -14.34865 -14.18395 -14.02097 -13.82988 -13.48115 -13.08981 -12.96112 -12.45240 -12.41709 -12.04252 -12.00374 -11.64563 -11.58791 -11.52582 -11.43774 -10.67236 -10.37605 -10.30266 -9.59217 -8.46180 -6.08265 1.31092 1.34053 1.41636 1.45851 1.77159 2.02420 2.20307 2.67767 3.01942 3.10103 3.34057 3.48046 3.64977 3.97398 4.14075 4.18452 4.21573 4.35635 4.38855 4.41923 4.50141 4.64965 4.73863 4.84877 4.92281 5.00489 5.20915 5.25170 5.27639 5.48580 5.86879 5.94685 6.47960 6.76953 6.83479 7.26731 7.42397 7.76848 8.70234 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.050881 B = 0.003092 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.167570 B = 9052.278549 C = 9534.582498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.615 6.615 12 C 0.138 3.862 13 N -0.726 5.726 14 C 0.721 3.279 15 O -0.627 6.627 16 N -0.637 5.637 17 C 0.091 3.909 18 C -0.115 4.115 19 C -0.129 4.129 20 H 0.093 0.907 21 C 0.074 3.926 22 F -0.230 7.230 23 C 0.131 3.869 24 H 0.281 0.719 25 H 0.392 0.608 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.408 0.592 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.972 -11.529 0.438 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.009 3.991 13 N -0.384 5.384 14 C 0.423 3.577 15 O -0.509 6.509 16 N -0.375 5.375 17 C -0.032 4.032 18 C -0.153 4.153 19 C -0.149 4.149 20 H 0.112 0.888 21 C 0.019 3.981 22 F -0.211 7.211 23 C 0.008 3.992 24 H 0.091 0.909 25 H 0.228 0.772 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.246 0.754 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.875 -11.386 0.437 24.665 hybrid contribution -0.783 0.689 -0.108 1.048 sum 21.092 -10.697 0.329 23.652 Atomic orbital electron populations 1.69782 1.08043 1.29485 1.49225 1.26074 0.96433 1.02611 0.95669 0.85440 0.79588 0.76980 0.80092 1.18068 1.19817 1.15557 1.19028 0.80916 0.95286 1.50814 0.91840 1.41909 1.06144 1.07389 1.66214 1.20470 0.89960 0.83896 0.82367 1.90522 1.70766 1.32344 1.56443 1.20719 0.89349 0.83954 1.05055 1.44743 1.05494 1.08908 1.79225 1.15397 0.81976 0.82419 0.77934 1.90877 1.55789 1.43579 1.60607 1.47517 1.09041 1.03301 1.77653 1.22232 0.94505 0.84151 1.02295 1.22667 0.93447 0.95835 1.03347 1.22894 0.96081 0.93925 1.01950 0.88850 1.21986 0.98354 0.77359 1.00362 1.92750 1.97721 1.41256 1.89414 1.22041 0.80693 0.94564 1.01902 0.90896 0.77175 0.87934 0.87947 0.75404 0.90963 0.91515 0.88765 0.88551 0.88510 0.88467 0.90669 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.31 13.96 21.67 0.30 -54.00 16 2 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 3 Si 0.96 38.00 27.73 68.60 1.90 39.90 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 7 C -0.33 -18.80 10.16 84.04 0.85 -17.95 16 8 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 9 N -0.58 -26.53 5.09 -306.97 -1.56 -28.10 16 10 C 0.45 19.54 7.85 87.65 0.69 20.23 16 11 O -0.61 -31.78 15.24 -3.08 -0.05 -31.83 16 12 C 0.14 4.62 6.15 85.63 0.53 5.15 16 13 N -0.73 -23.44 5.49 -482.32 -2.65 -26.09 16 14 C 0.72 22.50 8.49 179.06 1.52 24.02 16 15 O -0.63 -23.11 16.60 -3.99 -0.07 -23.18 16 16 N -0.64 -14.78 3.33 -830.21 -2.76 -17.54 16 17 C 0.09 1.63 6.15 86.73 0.53 2.16 16 18 C -0.12 -1.37 6.32 31.78 0.20 -1.17 16 19 C -0.13 -1.50 3.38 -9.48 -0.03 -1.53 16 20 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 21 C 0.07 0.63 6.98 71.98 0.50 1.13 16 22 F -0.23 -3.35 17.24 44.97 0.78 -2.57 16 23 C 0.13 2.16 6.37 86.78 0.55 2.71 16 24 H 0.28 15.08 8.31 -92.71 -0.77 14.30 16 25 H 0.39 15.13 5.77 -92.71 -0.53 14.60 16 26 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.41 13.30 6.42 -92.71 -0.60 12.71 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 0.89 8.03 -2.38 -0.02 0.87 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 0.50 8.13 -2.39 -0.02 0.48 16 35 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 36 H 0.08 1.15 8.03 -2.39 -0.02 1.13 16 Total: -1.00 -75.34 309.88 1.64 -73.70 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.07 Total: 34.91 kcal Atomic # 6 Polarization: 28.98 SS G_CDS: 5.81 Total: 34.80 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -6.67 Total: -125.73 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -0.11 Total: -55.00 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.90 Total: 39.90 kcal Total: -75.34 1.64 -73.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883695862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.005 kcal (2) G-P(sol) polarization free energy of solvation -75.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds