Wall clock time and date at job start Mon Mar 30 2020 01:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29952 * 125.30308 * 2 1 4 4 O 1.41877 * 107.41544 * 180.02562 * 3 2 1 5 5 N 1.41876 * 106.38539 * 359.78319 * 4 3 2 6 6 C 1.29958 * 107.41501 * 0.36978 * 5 4 3 7 7 C 1.50701 * 125.30560 * 179.89655 * 6 5 4 8 8 N 1.46507 * 109.46743 * 269.69149 * 7 6 5 9 9 C 1.39673 * 119.99644 * 179.97438 * 8 7 6 10 10 C 1.38918 * 120.07035 * 179.97438 * 9 8 7 11 11 C 1.38103 * 119.92232 * 180.27899 * 10 9 8 12 12 C 1.38290 * 120.07421 * 359.46620 * 11 10 9 13 13 C 1.50699 * 119.92185 * 180.30180 * 12 11 10 14 14 C 1.50703 * 109.46917 * 270.24984 * 13 12 11 15 15 H 1.07997 * 119.99968 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99619 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00026 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99532 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47378 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46777 * 120.00142 * 18 16 14 21 21 H 1.48499 * 109.47088 * 239.99479 * 18 16 14 22 22 C 1.38282 * 120.14889 * 0.55744 * 12 11 10 23 23 C 1.38102 * 120.07756 * 359.69737 * 22 12 11 24 24 H 1.08999 * 109.46696 * 269.99526 * 1 2 3 25 25 H 1.09003 * 109.47141 * 29.99280 * 1 2 3 26 26 H 1.08996 * 109.46855 * 149.99816 * 1 2 3 27 27 H 1.08996 * 109.47368 * 149.69185 * 7 6 5 28 28 H 1.09005 * 109.47092 * 29.68663 * 7 6 5 29 29 H 0.97003 * 119.99776 * 0.02562 * 8 7 6 30 30 H 1.08002 * 120.03585 * 359.97438 * 10 9 8 31 31 H 1.07998 * 119.96426 * 179.72368 * 11 10 9 32 32 H 1.08989 * 109.47445 * 30.25532 * 13 12 11 33 33 H 1.09001 * 109.46624 * 150.25866 * 13 12 11 34 34 H 0.97001 * 119.99725 * 179.97438 * 17 16 14 35 35 H 1.07998 * 119.96086 * 179.72336 * 22 12 11 36 36 H 1.08001 * 120.04035 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6248 -0.0006 5 7 3.5711 -0.7935 0.0042 6 6 2.3213 -1.1498 -0.0007 7 6 1.8209 -2.5713 -0.0004 8 7 1.6579 -3.0319 -1.3816 9 6 1.2023 -4.3274 -1.6366 10 6 1.0467 -4.7655 -2.9456 11 6 0.5905 -6.0451 -3.1942 12 6 0.2992 -6.8936 -2.1418 13 6 -0.1918 -8.2915 -2.4170 14 6 -1.6962 -8.2868 -2.5073 15 1 -2.2419 -7.3637 -2.3787 16 6 -2.3756 -9.4609 -2.7541 17 7 -1.7109 -10.5847 -2.9112 18 14 -4.2403 -9.4548 -2.8667 19 1 -4.7444 -8.0740 -2.6565 20 1 -4.6566 -9.9343 -4.2091 21 1 -4.8020 -10.3514 -1.8247 22 6 0.4526 -6.4605 -0.8375 23 6 0.9034 -5.1804 -0.5818 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3633 -0.8899 -0.5138 27 1 0.8612 -2.6186 0.5140 28 1 2.5402 -3.2096 0.5129 29 1 1.8671 -2.4373 -2.1190 30 1 1.2775 -4.1045 -3.7680 31 1 0.4650 -6.3849 -4.2116 32 1 0.2276 -8.6451 -3.3588 33 1 0.1215 -8.9523 -1.6088 34 1 -2.1890 -11.4108 -3.0845 35 1 0.2200 -7.1243 -0.0180 36 1 1.0233 -4.8430 0.4371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902226684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:39 Heat of formation + Delta-G solvation = 110.331062 kcal Electronic energy + Delta-G solvation = -19355.630981 eV Core-core repulsion = 16229.712661 eV Total energy + Delta-G solvation = -3125.918320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.93260 -39.02836 -36.30917 -34.54817 -33.57287 -32.72967 -30.53540 -30.21585 -29.20417 -27.69532 -25.68269 -23.04319 -22.86692 -21.97013 -20.94047 -20.10669 -17.64983 -16.99732 -16.47885 -16.27931 -15.79616 -15.07738 -14.87629 -14.51426 -14.20352 -13.93484 -13.86472 -13.66634 -13.29099 -12.93608 -12.77268 -12.57486 -12.20899 -12.08179 -11.92594 -11.45210 -11.27123 -11.21071 -11.06208 -10.71606 -10.54439 -10.18512 -9.91773 -9.47566 -9.12353 -8.41331 -8.32867 -6.94416 -6.01310 -4.05727 0.05726 1.41734 2.03096 2.19968 2.23974 2.66541 3.29363 3.31249 3.37188 3.41684 3.54698 4.16260 4.39100 4.47226 4.59779 4.71799 4.88706 4.94445 5.09221 5.22954 5.31737 5.40675 5.44019 5.46040 5.92037 6.01475 6.23153 6.28078 6.48020 6.62073 6.71470 7.20476 7.23593 7.25626 7.54972 7.63609 7.86473 7.91901 7.94313 8.36532 9.00409 9.58046 11.07480 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035793 B = 0.003083 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.077834 B = 9079.909060 C = 9479.537132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.086 3.914 3 N -0.279 5.279 4 O 0.027 5.973 5 N -0.253 5.253 6 C 0.063 3.937 7 C 0.198 3.802 8 N -0.754 5.754 9 C 0.178 3.822 10 C -0.186 4.186 11 C -0.080 4.080 12 C -0.078 4.078 13 C 0.051 3.949 14 C -0.509 4.509 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.081 4.081 23 C -0.192 4.192 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.396 0.604 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.118 0.882 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 18.510 6.006 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 N -0.024 5.024 4 O -0.115 6.115 5 N 0.004 4.996 6 C -0.120 4.120 7 C 0.072 3.928 8 N -0.390 5.390 9 C 0.080 3.920 10 C -0.208 4.208 11 C -0.098 4.098 12 C -0.079 4.079 13 C 0.014 3.986 14 C -0.547 4.547 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.099 4.099 23 C -0.214 4.214 24 H 0.117 0.883 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.230 0.770 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.136 0.864 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.983 19.161 6.188 21.006 hybrid contribution -1.467 -0.200 -0.340 1.519 sum 4.516 18.962 5.848 20.350 Atomic orbital electron populations 1.20656 0.83799 1.05841 1.05140 1.24670 1.00580 0.88654 0.95764 1.79978 0.88972 1.19550 1.13918 1.93418 1.20435 1.13377 1.84279 1.80008 1.17616 0.91417 1.10540 1.24685 0.89892 0.99235 0.98214 1.19710 1.01443 0.84596 0.87024 1.44129 1.77185 1.13194 1.04504 1.17485 0.96902 0.83856 0.93781 1.20463 1.08835 0.97628 0.93839 1.20858 0.97244 0.92416 0.99322 1.20515 0.96335 0.99014 0.92048 1.18275 0.95820 0.86824 0.97657 1.21154 0.90992 0.94067 1.48494 0.92463 1.25027 0.98442 0.95592 0.95408 1.69968 1.35401 0.98857 1.49220 0.86515 0.85680 0.78088 0.77629 1.19694 1.21021 1.21007 1.20861 0.97484 0.94551 0.97043 1.20510 1.09001 0.95192 0.96692 0.88273 0.89033 0.88123 0.88970 0.89591 0.76965 0.87285 0.86390 0.95608 0.95591 0.92969 0.86412 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.05 36.01 0.36 -0.10 16 2 C 0.09 0.72 7.19 -82.38 -0.59 0.13 16 3 N -0.28 -3.03 12.98 33.74 0.44 -2.59 16 4 O 0.03 0.34 13.71 12.02 0.16 0.50 16 5 N -0.25 -2.94 12.98 33.74 0.44 -2.50 16 6 C 0.06 0.58 6.55 -82.38 -0.54 0.04 16 7 C 0.20 1.68 5.07 -5.19 -0.03 1.65 16 8 N -0.75 -7.93 5.73 -59.80 -0.34 -8.28 16 9 C 0.18 2.50 6.65 -83.78 -0.56 1.94 16 10 C -0.19 -2.87 9.90 -39.38 -0.39 -3.26 16 11 C -0.08 -1.48 9.69 -39.61 -0.38 -1.87 16 12 C -0.08 -1.62 5.07 -104.59 -0.53 -2.15 16 13 C 0.05 1.29 5.10 -29.03 -0.15 1.14 16 14 C -0.51 -13.98 9.09 -34.44 -0.31 -14.29 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 C -0.08 -1.48 9.69 -39.62 -0.38 -1.86 16 23 C -0.19 -2.87 9.31 -39.38 -0.37 -3.24 16 24 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.10 0.44 7.77 -51.93 -0.40 0.04 16 27 H 0.09 0.61 7.58 -51.93 -0.39 0.21 16 28 H 0.09 0.75 7.95 -51.93 -0.41 0.34 16 29 H 0.40 3.84 8.48 -40.82 -0.35 3.50 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.03 0.68 8.08 -51.94 -0.42 0.26 16 33 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.11 1.33 6.73 -52.49 -0.35 0.97 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -31.22 319.57 -7.14 -38.36 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.40 Total: -0.59 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -3.97 Total: -20.40 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 1.27 Total: -38.84 kcal Atomic # 8 Polarization: 0.34 SS G_CDS: 0.16 Total: 0.50 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.22 -7.14 -38.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.688 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds