Wall clock time and date at job start Mon Mar 30 2020 01:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29952 * 125.30308 * 2 1 4 4 O 1.41877 * 107.41544 * 180.02562 * 3 2 1 5 5 N 1.41876 * 106.38539 * 359.78319 * 4 3 2 6 6 C 1.29958 * 107.41501 * 0.36978 * 5 4 3 7 7 C 1.50701 * 125.30560 * 179.89655 * 6 5 4 8 8 N 1.46507 * 109.46743 * 269.69149 * 7 6 5 9 9 C 1.39673 * 119.99644 * 179.97438 * 8 7 6 10 10 C 1.38918 * 120.07035 * 179.97438 * 9 8 7 11 11 C 1.38103 * 119.92232 * 180.27899 * 10 9 8 12 12 C 1.38290 * 120.07421 * 359.46620 * 11 10 9 13 13 C 1.50699 * 119.92185 * 180.30180 * 12 11 10 14 14 C 1.50703 * 109.46917 * 270.24984 * 13 12 11 15 15 H 1.07997 * 119.99968 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99619 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00026 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99532 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47378 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46777 * 120.00142 * 18 16 14 21 21 H 1.48499 * 109.47088 * 239.99479 * 18 16 14 22 22 C 1.38282 * 120.14889 * 0.55744 * 12 11 10 23 23 C 1.38102 * 120.07756 * 359.69737 * 22 12 11 24 24 H 1.08999 * 109.46696 * 269.99526 * 1 2 3 25 25 H 1.09003 * 109.47141 * 29.99280 * 1 2 3 26 26 H 1.08996 * 109.46855 * 149.99816 * 1 2 3 27 27 H 1.08996 * 109.47368 * 149.69185 * 7 6 5 28 28 H 1.09005 * 109.47092 * 29.68663 * 7 6 5 29 29 H 0.97003 * 119.99776 * 0.02562 * 8 7 6 30 30 H 1.08002 * 120.03585 * 359.97438 * 10 9 8 31 31 H 1.07998 * 119.96426 * 179.72368 * 11 10 9 32 32 H 1.08989 * 109.47445 * 30.25532 * 13 12 11 33 33 H 1.09001 * 109.46624 * 150.25866 * 13 12 11 34 34 H 0.97001 * 119.99725 * 179.97438 * 17 16 14 35 35 H 1.07998 * 119.96086 * 179.72336 * 22 12 11 36 36 H 1.08001 * 120.04035 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6248 -0.0006 5 7 3.5711 -0.7935 0.0042 6 6 2.3213 -1.1498 -0.0007 7 6 1.8209 -2.5713 -0.0004 8 7 1.6579 -3.0319 -1.3816 9 6 1.2023 -4.3274 -1.6366 10 6 1.0467 -4.7655 -2.9456 11 6 0.5905 -6.0451 -3.1942 12 6 0.2992 -6.8936 -2.1418 13 6 -0.1918 -8.2915 -2.4170 14 6 -1.6962 -8.2868 -2.5073 15 1 -2.2419 -7.3637 -2.3787 16 6 -2.3756 -9.4609 -2.7541 17 7 -1.7109 -10.5847 -2.9112 18 14 -4.2403 -9.4548 -2.8667 19 1 -4.7444 -8.0740 -2.6565 20 1 -4.6566 -9.9343 -4.2091 21 1 -4.8020 -10.3514 -1.8247 22 6 0.4526 -6.4605 -0.8375 23 6 0.9034 -5.1804 -0.5818 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3633 -0.8899 -0.5138 27 1 0.8612 -2.6186 0.5140 28 1 2.5402 -3.2096 0.5129 29 1 1.8671 -2.4373 -2.1190 30 1 1.2775 -4.1045 -3.7680 31 1 0.4650 -6.3849 -4.2116 32 1 0.2276 -8.6451 -3.3588 33 1 0.1215 -8.9523 -1.6088 34 1 -2.1890 -11.4108 -3.0845 35 1 0.2200 -7.1243 -0.0180 36 1 1.0233 -4.8430 0.4371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902226684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:39 Heat of formation + Delta-G solvation = 90.473340 kcal Electronic energy + Delta-G solvation = -19356.492076 eV Core-core repulsion = 16229.712661 eV Total energy + Delta-G solvation = -3126.779415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.66741 -40.27535 -37.36564 -35.49655 -34.94315 -34.05014 -31.96114 -31.59450 -29.74875 -28.96237 -27.10257 -24.64254 -23.95074 -22.98859 -21.80210 -21.43282 -18.57880 -18.42297 -17.87328 -17.28362 -16.85527 -16.54420 -15.82111 -15.70432 -15.27723 -14.95944 -14.81545 -14.42259 -14.29467 -14.27719 -14.03497 -13.66027 -13.40931 -13.17199 -13.02826 -12.93085 -12.63900 -12.54809 -12.38153 -12.17653 -11.72428 -11.58868 -11.56658 -11.32481 -10.64068 -10.55861 -9.63884 -8.31059 -7.98370 -6.26964 -0.68844 0.71697 0.74592 0.89894 1.39991 1.42896 1.43474 1.56913 1.95516 2.44423 2.50085 2.76087 3.16317 3.19202 3.50894 3.87382 4.11280 4.15821 4.26884 4.42835 4.49867 4.55598 4.62999 4.72071 4.73927 4.81552 5.00258 5.11693 5.23991 5.38831 5.43389 5.57670 5.73749 5.74996 5.83873 5.98992 6.26252 6.28102 6.50264 6.77040 6.87508 7.41658 8.95197 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035793 B = 0.003083 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.077834 B = 9079.909060 C = 9479.537132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.102 3.898 3 N -0.302 5.302 4 O -0.009 6.009 5 N -0.278 5.278 6 C 0.079 3.921 7 C 0.195 3.805 8 N -0.742 5.742 9 C 0.201 3.799 10 C -0.185 4.185 11 C -0.092 4.092 12 C -0.118 4.118 13 C 0.060 3.940 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.278 1.278 22 C -0.090 4.090 23 C -0.184 4.184 24 H 0.122 0.878 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.404 0.596 30 H 0.136 0.864 31 H 0.108 0.892 32 H -0.005 1.005 33 H -0.002 1.002 34 H 0.263 0.737 35 H 0.112 0.888 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 20.783 6.984 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 N -0.051 5.051 4 O -0.145 6.145 5 N -0.023 5.023 6 C -0.105 4.105 7 C 0.070 3.930 8 N -0.376 5.376 9 C 0.101 3.899 10 C -0.207 4.207 11 C -0.111 4.111 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.560 4.560 15 H 0.075 0.925 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.186 1.186 20 H -0.205 1.205 21 H -0.203 1.203 22 C -0.108 4.108 23 C -0.206 4.206 24 H 0.140 0.860 25 H 0.117 0.883 26 H 0.131 0.869 27 H 0.143 0.857 28 H 0.110 0.890 29 H 0.239 0.761 30 H 0.154 0.846 31 H 0.126 0.874 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.698 21.500 7.174 23.147 hybrid contribution -1.007 -0.823 -0.608 1.435 sum 3.691 20.677 6.567 22.006 Atomic orbital electron populations 1.20905 0.80924 1.06786 1.06827 1.25236 1.01973 0.87601 0.93281 1.79983 0.88527 1.20631 1.15980 1.93404 1.21808 1.13782 1.85484 1.79981 1.19138 0.91324 1.11818 1.24859 0.89343 0.99712 0.96631 1.19992 1.03279 0.83919 0.85848 1.44107 1.75750 1.11792 1.05990 1.17460 0.94654 0.84846 0.92968 1.20630 1.07947 0.96508 0.95578 1.20808 0.98213 0.93745 0.98289 1.20158 1.00379 0.97271 0.94193 1.18010 0.95059 0.89668 0.94937 1.21500 0.92349 0.94081 1.48061 0.92528 1.25968 1.03721 0.95143 0.94953 1.70102 1.37528 0.99582 1.50280 0.85396 0.79337 0.78557 0.77755 1.18572 1.20516 1.20319 1.20864 0.98129 0.96218 0.95634 1.20734 1.07524 0.93581 0.98787 0.85990 0.88329 0.86886 0.85670 0.89047 0.76083 0.84623 0.87437 0.98674 0.98394 0.92768 0.86969 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 10.05 71.24 0.72 0.21 16 2 C 0.10 1.38 7.19 43.49 0.31 1.69 16 3 N -0.30 -6.09 12.98 -47.15 -0.61 -6.70 16 4 O -0.01 -0.23 13.71 70.17 0.96 0.73 16 5 N -0.28 -5.98 12.98 -47.16 -0.61 -6.59 16 6 C 0.08 1.19 6.55 43.49 0.29 1.47 16 7 C 0.19 2.36 5.07 85.63 0.43 2.79 16 8 N -0.74 -12.20 5.73 -343.11 -1.96 -14.17 16 9 C 0.20 4.91 6.65 38.22 0.25 5.17 16 10 C -0.18 -5.27 9.90 22.40 0.22 -5.04 16 11 C -0.09 -3.43 9.69 22.25 0.22 -3.21 16 12 C -0.12 -5.07 5.07 -19.84 -0.10 -5.17 16 13 C 0.06 3.22 5.10 29.10 0.15 3.37 16 14 C -0.52 -29.58 9.09 25.60 0.23 -29.35 16 15 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 16 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 17 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 18 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 C -0.09 -3.23 9.69 22.25 0.22 -3.02 16 23 C -0.18 -4.89 9.31 22.40 0.21 -4.69 16 24 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.11 0.38 7.77 -2.39 -0.02 0.37 16 27 H 0.13 0.84 7.58 -2.39 -0.02 0.83 16 28 H 0.09 1.15 7.95 -2.38 -0.02 1.13 16 29 H 0.40 6.02 8.48 -92.71 -0.79 5.23 16 30 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 32 H -0.01 -0.29 8.08 -2.39 -0.02 -0.31 16 33 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.11 4.05 8.06 -2.91 -0.02 4.02 16 36 H 0.15 2.78 6.73 -2.91 -0.02 2.77 16 Total: -1.00 -71.43 319.57 4.01 -67.42 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.32 Total: 5.06 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 3.61 Total: -35.33 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.90 Total: -83.72 kcal Atomic # 8 Polarization: -0.23 SS G_CDS: 0.96 Total: 0.73 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.43 4.01 -67.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.896 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds