Wall clock time and date at job start Mon Mar 30 2020 01:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21527 * 119.99995 * 359.97438 * 14 13 3 16 16 C 1.48061 * 119.99991 * 180.02562 * 14 13 3 17 17 C 1.39761 * 119.47044 * 179.72918 * 16 14 13 18 18 C 1.38141 * 119.57379 * 179.76355 * 17 16 14 19 19 C 1.39253 * 118.37770 * 0.49619 * 18 17 16 20 20 N 1.37350 * 133.61410 * 179.77040 * 19 18 17 21 21 H 0.97004 * 125.04829 * 359.97438 * 20 19 18 22 22 C 1.36713 * 109.89801 * 179.97438 * 20 19 18 23 23 C 1.34291 * 110.02326 * 0.02562 * 22 20 19 24 24 C 1.41200 * 119.09953 * 359.74787 * 19 18 17 25 25 N 1.32448 * 119.46777 * 359.97438 * 16 14 13 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 33 33 H 1.08002 * 120.21739 * 359.97438 * 17 16 14 34 34 H 1.07993 * 120.81018 * 180.23982 * 18 17 16 35 35 H 1.08003 * 124.99167 * 180.02562 * 22 20 19 36 36 H 1.08000 * 126.48491 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3408 2.6326 0.4322 16 6 0.0437 3.3268 2.6319 17 6 -1.2192 3.9161 2.7373 18 6 -1.5885 4.5305 3.9182 19 6 -0.6744 4.5492 4.9685 20 7 -0.7058 5.0608 6.2428 21 1 -1.4557 5.5357 6.6341 22 6 0.4769 4.8013 6.8776 23 6 1.3006 4.1280 6.0581 24 6 0.5867 3.9391 4.7923 25 7 0.8979 3.3556 3.6438 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 -1.9033 3.8884 1.9020 34 1 -2.5608 4.9887 4.0227 35 1 0.7139 5.0947 7.8896 36 1 2.2997 3.7889 6.2887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907389725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:00 Heat of formation + Delta-G solvation = 29.246271 kcal Electronic energy + Delta-G solvation = -20346.709347 eV Core-core repulsion = 17217.274927 eV Total energy + Delta-G solvation = -3129.434420 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.58759 -39.16336 -37.31282 -34.95382 -32.96753 -32.18538 -30.99175 -29.90579 -29.41031 -26.90571 -24.44932 -23.10908 -22.47816 -21.05342 -20.33829 -19.26469 -18.28149 -17.65854 -16.74197 -15.89885 -15.27540 -15.12151 -14.72741 -14.35016 -14.24546 -13.82165 -13.39264 -13.11655 -12.77751 -12.64572 -12.60161 -12.44781 -11.73721 -11.37616 -11.16510 -10.91373 -10.74066 -10.41293 -10.25148 -10.08692 -9.66038 -9.51956 -8.94917 -8.93993 -8.44530 -8.41460 -8.23932 -7.68650 -6.03948 -4.12271 0.90956 1.10560 2.48896 2.81578 3.31282 3.37420 3.38466 3.41292 3.95588 4.24349 4.32662 4.45867 4.55356 4.85790 4.99058 5.08341 5.27259 5.35840 5.61910 5.68765 5.86043 6.12821 6.27291 6.38409 6.47735 6.55294 6.74359 6.83633 7.14500 7.18974 7.27784 7.45481 7.54321 7.71535 7.81703 7.95857 8.06268 8.26422 8.80771 8.86701 9.22544 9.54617 11.01575 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.004558 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.711440 B = 6141.040433 C = 6965.013956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.267 3.733 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.684 5.684 14 C 0.556 3.444 15 O -0.546 6.546 16 C 0.086 3.914 17 C -0.099 4.099 18 C -0.097 4.097 19 C 0.056 3.944 20 N -0.592 5.592 21 H 0.417 0.583 22 C 0.060 3.940 23 C -0.182 4.182 24 C 0.087 3.913 25 N -0.418 5.418 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.022 0.978 29 H 0.032 0.968 30 H 0.100 0.900 31 H 0.263 0.737 32 H 0.399 0.601 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.178 0.822 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.289 8.656 17.567 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.330 5.330 14 C 0.339 3.661 15 O -0.425 6.425 16 C -0.062 4.062 17 C -0.121 4.121 18 C -0.126 4.126 19 C -0.054 4.054 20 N -0.196 5.196 21 H 0.254 0.746 22 C -0.067 4.067 23 C -0.208 4.208 24 C -0.048 4.048 25 N -0.129 5.129 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.233 0.767 33 H 0.170 0.830 34 H 0.153 0.847 35 H 0.195 0.805 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.001 8.175 16.674 20.220 hybrid contribution 0.111 0.611 0.658 0.905 sum -7.890 8.786 17.332 20.972 Atomic orbital electron populations 1.21847 0.98388 0.98043 1.01233 1.21934 0.92616 0.99719 1.02360 1.18866 0.94356 0.89274 0.80930 0.93125 1.21258 0.90705 1.38736 1.06233 0.91949 1.24875 0.98553 0.94865 0.95367 1.69901 1.35039 1.37853 1.09357 0.86454 0.84991 0.78461 0.77244 1.20573 1.21155 1.19841 1.46405 1.14202 1.53742 1.18672 1.17727 0.83413 0.79520 0.85401 1.90742 1.51933 1.60877 1.38930 1.21473 0.91419 0.99526 0.93826 1.21811 0.96899 0.95826 0.97601 1.20402 0.98802 1.02236 0.91170 1.19265 0.98243 1.00712 0.87180 1.41556 1.16129 1.50914 1.11018 0.74606 1.21896 0.85281 1.00881 0.98672 1.21625 1.01155 1.07073 0.90908 1.20089 0.92031 0.99335 0.93374 1.66999 1.33627 1.13801 0.98470 0.93080 0.94303 0.95848 0.94939 0.88200 0.92655 0.76664 0.82992 0.84696 0.80519 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.22 5.45 -26.74 -0.15 -3.37 16 3 C 0.27 7.03 2.24 -69.08 -0.15 6.87 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.56 8.73 -34.44 -0.30 -14.86 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.18 11.30 55.43 0.63 -24.56 16 9 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.68 -15.70 5.01 -55.81 -0.28 -15.98 16 14 C 0.56 12.16 6.37 -12.23 -0.08 12.08 16 15 O -0.55 -13.06 13.43 5.34 0.07 -12.99 16 16 C 0.09 1.58 6.74 -83.00 -0.56 1.02 16 17 C -0.10 -1.49 9.60 -39.05 -0.37 -1.87 16 18 C -0.10 -1.15 10.18 -39.24 -0.40 -1.55 16 19 C 0.06 0.68 7.29 -83.89 -0.61 0.07 16 20 N -0.59 -4.78 6.05 -10.58 -0.06 -4.84 16 21 H 0.42 1.85 8.96 -40.82 -0.37 1.49 16 22 C 0.06 0.46 11.81 -16.77 -0.20 0.26 16 23 C -0.18 -2.03 11.08 -37.63 -0.42 -2.45 16 24 C 0.09 1.30 7.52 -83.09 -0.62 0.68 16 25 N -0.42 -7.42 9.57 -6.43 -0.06 -7.48 16 26 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 27 H 0.04 0.88 5.65 -51.93 -0.29 0.59 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 2.75 5.95 -51.93 -0.31 2.44 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.40 8.67 7.85 -40.82 -0.32 8.35 16 33 H 0.15 2.17 7.61 -52.49 -0.40 1.77 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.18 0.58 8.06 -52.48 -0.42 0.16 16 36 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -32.83 304.98 -7.92 -40.75 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.14 Total: 8.66 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -3.64 Total: -4.26 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.22 Total: -52.87 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.83 -7.92 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.995 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds