Wall clock time and date at job start Mon Mar 30 2020 01:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21527 * 119.99995 * 359.97438 * 14 13 3 16 16 C 1.48061 * 119.99991 * 180.02562 * 14 13 3 17 17 C 1.39761 * 119.47044 * 179.72918 * 16 14 13 18 18 C 1.38141 * 119.57379 * 179.76355 * 17 16 14 19 19 C 1.39253 * 118.37770 * 0.49619 * 18 17 16 20 20 N 1.37350 * 133.61410 * 179.77040 * 19 18 17 21 21 H 0.97004 * 125.04829 * 359.97438 * 20 19 18 22 22 C 1.36713 * 109.89801 * 179.97438 * 20 19 18 23 23 C 1.34291 * 110.02326 * 0.02562 * 22 20 19 24 24 C 1.41200 * 119.09953 * 359.74787 * 19 18 17 25 25 N 1.32448 * 119.46777 * 359.97438 * 16 14 13 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 33 33 H 1.08002 * 120.21739 * 359.97438 * 17 16 14 34 34 H 1.07993 * 120.81018 * 180.23982 * 18 17 16 35 35 H 1.08003 * 124.99167 * 180.02562 * 22 20 19 36 36 H 1.08000 * 126.48491 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3408 2.6326 0.4322 16 6 0.0437 3.3268 2.6319 17 6 -1.2192 3.9161 2.7373 18 6 -1.5885 4.5305 3.9182 19 6 -0.6744 4.5492 4.9685 20 7 -0.7058 5.0608 6.2428 21 1 -1.4557 5.5357 6.6341 22 6 0.4769 4.8013 6.8776 23 6 1.3006 4.1280 6.0581 24 6 0.5867 3.9391 4.7923 25 7 0.8979 3.3556 3.6438 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 -1.9033 3.8884 1.9020 34 1 -2.5608 4.9887 4.0227 35 1 0.7139 5.0947 7.8896 36 1 2.2997 3.7889 6.2887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907389725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:59 Heat of formation + Delta-G solvation = 5.479523 kcal Electronic energy + Delta-G solvation = -20347.739950 eV Core-core repulsion = 17217.274927 eV Total energy + Delta-G solvation = -3130.465024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.52798 -40.75289 -38.53940 -36.90078 -34.39769 -33.79625 -32.82457 -31.03539 -30.40129 -28.89985 -25.80982 -24.81834 -23.72847 -22.27572 -21.60684 -21.14657 -19.43034 -19.08759 -17.78252 -17.75280 -17.10705 -16.45164 -16.18639 -15.77171 -15.70164 -15.24607 -14.59787 -14.48796 -14.09909 -13.94983 -13.81099 -13.61656 -13.51497 -13.17153 -13.14696 -12.89956 -12.65573 -12.17287 -12.06155 -11.60190 -11.39104 -11.12882 -11.02805 -10.53617 -10.36130 -9.70518 -9.39959 -9.07037 -8.15404 -6.32612 -0.19280 0.06086 1.44733 1.45796 1.56695 1.70115 1.94415 2.06857 2.35633 2.57554 2.99883 3.12749 3.14353 3.68107 3.89888 4.05186 4.05777 4.49442 4.49671 4.57130 4.57853 4.71936 4.75146 4.99717 5.01586 5.08871 5.25015 5.39940 5.43714 5.46630 5.55127 5.61866 5.79067 5.87952 5.92809 6.16060 6.61682 6.73261 6.76418 7.06098 7.32106 7.51351 8.90247 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.004558 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.711440 B = 6141.040433 C = 6965.013956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.275 3.725 4 H 0.004 0.996 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.268 1.268 13 N -0.688 5.688 14 C 0.554 3.446 15 O -0.576 6.576 16 C 0.052 3.948 17 C -0.115 4.115 18 C -0.077 4.077 19 C 0.058 3.942 20 N -0.570 5.570 21 H 0.440 0.560 22 C 0.106 3.894 23 C -0.225 4.225 24 C 0.055 3.945 25 N -0.448 5.448 26 H 0.031 0.969 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.266 0.734 32 H 0.404 0.596 33 H 0.151 0.849 34 H 0.181 0.819 35 H 0.234 0.766 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 10.136 21.182 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.172 3.828 4 H 0.022 0.978 5 C -0.590 4.590 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.193 1.193 13 N -0.335 5.335 14 C 0.340 3.660 15 O -0.457 6.457 16 C -0.094 4.094 17 C -0.137 4.137 18 C -0.105 4.105 19 C -0.054 4.054 20 N -0.176 5.176 21 H 0.282 0.718 22 C -0.022 4.022 23 C -0.249 4.249 24 C -0.082 4.082 25 N -0.160 5.160 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.239 0.761 33 H 0.169 0.831 34 H 0.198 0.802 35 H 0.250 0.750 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.431 9.677 20.326 24.039 hybrid contribution 0.180 0.268 -0.248 0.407 sum -8.251 9.945 20.078 23.877 Atomic orbital electron populations 1.21679 0.96799 0.99332 1.00276 1.21781 0.93973 0.98875 1.01276 1.18498 0.93889 0.89396 0.80989 0.97772 1.21538 0.91363 1.39267 1.06794 0.91743 1.25750 1.03466 0.94176 0.94786 1.70039 1.37050 1.38204 1.09789 0.85350 0.78914 0.78805 0.77287 1.19529 1.20750 1.19284 1.46216 1.15152 1.54469 1.17671 1.18309 0.82362 0.78641 0.86668 1.90696 1.52534 1.61914 1.40576 1.20905 0.93372 1.02329 0.92813 1.21815 0.95688 0.96925 0.99276 1.20734 1.00214 1.00175 0.89413 1.19333 0.97156 1.00083 0.88814 1.41653 1.17130 1.49511 1.09281 0.71825 1.22702 0.83324 0.96577 0.99632 1.21916 1.02605 1.10064 0.90358 1.20793 0.94300 0.99605 0.93513 1.66822 1.34329 1.15297 0.99574 0.94938 0.94305 0.93261 0.94529 0.90444 0.92446 0.76123 0.83107 0.80205 0.75007 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.51 71.98 0.61 -5.32 16 2 C -0.12 -6.35 5.45 30.59 0.17 -6.19 16 3 C 0.28 15.35 2.24 44.24 0.10 15.45 16 4 H 0.00 0.28 7.58 -2.39 -0.02 0.26 16 5 C -0.55 -31.44 8.73 25.60 0.22 -31.21 16 6 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.02 1.04 5.29 84.65 0.45 1.48 16 8 N -0.91 -53.74 11.30 21.45 0.24 -53.50 16 9 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.69 -33.64 5.01 -448.78 -2.25 -35.89 16 14 C 0.55 25.83 6.37 86.85 0.55 26.38 16 15 O -0.58 -29.48 13.43 -3.80 -0.05 -29.53 16 16 C 0.05 2.00 6.74 42.03 0.28 2.28 16 17 C -0.11 -3.47 9.60 22.62 0.22 -3.25 16 18 C -0.08 -1.63 10.18 22.49 0.23 -1.40 16 19 C 0.06 1.24 7.29 39.25 0.29 1.53 16 20 N -0.57 -6.26 6.05 -187.38 -1.13 -7.39 16 21 H 0.44 1.17 8.96 -92.71 -0.83 0.34 16 22 C 0.11 1.06 11.81 83.03 0.98 2.04 16 23 C -0.22 -4.47 11.08 23.54 0.26 -4.21 16 24 C 0.05 1.58 7.52 41.93 0.32 1.89 16 25 N -0.45 -16.43 9.57 -174.25 -1.67 -18.10 16 26 H 0.03 1.64 7.84 -2.39 -0.02 1.62 16 27 H 0.04 1.84 5.65 -2.39 -0.01 1.82 16 28 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 4.46 5.95 -2.39 -0.01 4.44 16 31 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.40 18.68 7.85 -92.71 -0.73 17.95 16 33 H 0.15 4.44 7.61 -2.91 -0.02 4.42 16 34 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.23 -0.23 8.06 -2.91 -0.02 -0.26 16 36 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -77.38 304.98 1.42 -75.96 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -0.43 Total: 22.95 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.68 Total: -0.53 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -4.81 Total: -114.88 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.05 Total: -29.53 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.38 1.42 -75.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.438 kcal (2) G-P(sol) polarization free energy of solvation -77.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds