Wall clock time and date at job start Mon Mar 30 2020 01:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.09001 * 109.46979 * 304.99867 * 3 2 1 5 5 C 1.50693 * 109.47331 * 184.99854 * 3 2 1 6 6 H 1.08002 * 120.00578 * 240.00240 * 5 3 2 7 7 C 1.37881 * 120.00190 * 59.99678 * 5 3 2 8 8 N 1.31518 * 119.99382 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00471 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46821 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47222 * 120.00101 * 9 7 5 12 12 H 1.48499 * 109.47270 * 240.00453 * 9 7 5 13 13 N 1.46504 * 109.46930 * 65.00065 * 3 2 1 14 14 C 1.34777 * 119.99854 * 274.99613 * 13 3 2 15 15 O 1.21653 * 119.99992 * 0.02562 * 14 13 3 16 16 C 1.47066 * 120.00157 * 180.27721 * 14 13 3 17 17 C 1.35908 * 125.42740 * 179.41870 * 16 14 13 18 18 C 1.41428 * 107.67525 * 179.90345 * 17 16 14 19 19 C 1.39838 * 134.34805 * 180.08904 * 18 17 16 20 20 N 1.31559 * 120.04198 * 180.29421 * 19 18 17 21 21 C 1.32357 * 122.32201 * 359.97438 * 20 19 18 22 22 C 1.36641 * 121.64431 * 0.02562 * 21 20 19 23 23 C 1.39436 * 119.01283 * 0.02562 * 22 21 20 24 24 N 1.36882 * 134.32766 * 180.02562 * 23 22 21 25 25 H 0.96998 * 125.58261 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46988 * 300.00007 * 1 2 3 27 27 H 1.09003 * 109.47017 * 60.00074 * 1 2 3 28 28 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46988 * 239.99993 * 2 1 3 30 30 H 1.09003 * 109.47017 * 119.99926 * 2 1 3 31 31 H 0.97002 * 119.99552 * 180.02562 * 8 7 5 32 32 H 0.97000 * 120.00410 * 95.00338 * 13 3 2 33 33 H 1.08000 * 126.15790 * 0.04139 * 17 16 14 34 34 H 1.08000 * 119.98085 * 0.31571 * 19 18 17 35 35 H 1.08005 * 119.18292 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.49378 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4061 0.3373 -2.1732 9 14 6.0050 0.8798 -1.3811 10 1 6.5988 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4000 1.6155 -2.6091 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3670 15 8 -0.3419 2.6319 0.4315 16 6 0.0484 3.3272 2.6215 17 6 -1.1414 3.9418 2.8535 18 6 -1.1140 4.4458 4.1746 19 6 -2.0206 5.1539 4.9697 20 7 -1.6928 5.4964 6.1969 21 6 -0.5178 5.1943 6.7259 22 6 0.4293 4.5049 6.0225 23 6 0.1474 4.1118 4.7147 24 7 0.8397 3.4299 3.7506 25 1 1.7377 3.0755 3.8448 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0612 -2.9498 32 1 2.2719 2.1231 1.9979 33 1 -1.9611 4.0275 2.1555 34 1 -2.9907 5.4195 4.5762 35 1 -0.3017 5.5011 7.7387 36 1 1.3823 4.2686 6.4724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935401221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:49 Heat of formation + Delta-G solvation = 23.669312 kcal Electronic energy + Delta-G solvation = -20268.776424 eV Core-core repulsion = 17139.100169 eV Total energy + Delta-G solvation = -3129.676255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.83606 -39.21283 -37.79167 -35.25324 -32.68611 -32.39096 -31.32290 -30.46575 -29.23396 -27.18566 -24.53978 -23.06943 -22.82056 -21.58554 -20.20685 -19.57413 -18.76950 -17.61254 -16.34691 -15.80210 -15.40574 -15.27102 -15.18423 -14.52708 -14.37150 -14.26939 -13.84551 -13.39677 -13.09251 -12.84964 -12.76199 -12.11020 -11.63845 -11.58336 -11.36421 -11.07966 -10.95127 -10.43145 -10.32284 -10.15929 -9.76838 -9.66272 -9.44463 -9.18014 -8.89360 -8.62781 -8.14339 -7.91966 -6.23667 -4.34106 0.61888 1.45244 2.14338 2.77766 3.16087 3.24276 3.26033 3.71086 3.76857 3.86579 4.25774 4.41599 4.48059 4.87409 4.97873 5.07508 5.09018 5.28393 5.40615 5.64841 5.77995 5.96723 6.29134 6.31566 6.35534 6.48752 6.54560 6.72729 6.92197 7.07046 7.16141 7.20100 7.26103 7.48735 7.58177 7.75673 7.98421 8.04401 8.40918 8.60403 8.84091 9.33222 10.81645 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028966 B = 0.004159 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.415719 B = 6730.332953 C = 7406.006133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.054 0.946 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.879 5.879 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.701 5.701 14 C 0.565 3.435 15 O -0.524 6.524 16 C 0.036 3.964 17 C -0.108 4.108 18 C -0.170 4.170 19 C 0.172 3.828 20 N -0.510 5.510 21 C 0.097 3.903 22 C -0.179 4.179 23 C 0.133 3.867 24 N -0.568 5.568 25 H 0.422 0.578 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.102 0.898 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.383 0.617 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 5.636 13.615 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.072 0.928 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.348 5.348 14 C 0.349 3.651 15 O -0.401 6.401 16 C -0.073 4.073 17 C -0.136 4.136 18 C -0.178 4.178 19 C 0.005 3.995 20 N -0.219 5.219 21 C -0.051 4.051 22 C -0.202 4.202 23 C 0.015 3.985 24 N -0.173 5.173 25 H 0.260 0.740 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.120 0.880 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.215 0.785 33 H 0.178 0.822 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.716 5.863 13.230 15.559 hybrid contribution 2.530 -0.756 -0.170 2.646 sum -3.187 5.107 13.060 14.381 Atomic orbital electron populations 1.21858 0.98204 0.98349 1.01260 1.21951 0.92734 0.99527 1.02479 1.18903 0.94505 0.89312 0.80392 0.92839 1.21212 0.90452 1.39500 1.06527 0.92100 1.24880 0.98749 0.94632 0.95287 1.69896 1.35162 1.37271 1.09292 0.86381 0.84609 0.77856 0.78183 1.19804 1.20781 1.20759 1.46503 1.13918 1.55549 1.18818 1.17155 0.83367 0.79428 0.85165 1.90840 1.51413 1.59752 1.38074 1.20919 0.92904 1.05220 0.88285 1.20839 0.97400 1.00352 0.94996 1.19246 0.95812 1.06283 0.96412 1.22478 0.97892 0.90851 0.88287 1.67632 1.19531 1.21945 1.12830 1.22021 0.88571 0.94923 0.99578 1.20786 1.02462 1.04910 0.92068 1.18392 0.92490 0.96360 0.91250 1.41990 1.16430 1.47991 1.10852 0.73971 0.94379 0.92942 0.95595 0.88022 0.94992 0.92445 0.78494 0.82173 0.82272 0.82805 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.44 2.24 -69.09 -0.15 6.29 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.55 8.73 -34.44 -0.30 -13.86 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.74 11.29 55.43 0.63 -23.12 16 9 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.70 -13.56 5.02 -56.12 -0.28 -13.85 16 14 C 0.57 10.72 6.37 -12.68 -0.08 10.64 16 15 O -0.52 -11.60 13.97 5.23 0.07 -11.53 16 16 C 0.04 0.56 6.97 -82.22 -0.57 -0.01 16 17 C -0.11 -1.55 10.53 -39.20 -0.41 -1.97 16 18 C -0.17 -2.24 6.21 -106.95 -0.66 -2.91 16 19 C 0.17 2.03 11.29 -17.07 -0.19 1.83 16 20 N -0.51 -6.23 10.33 -13.18 -0.14 -6.36 16 21 C 0.10 1.01 11.09 -17.90 -0.20 0.82 16 22 C -0.18 -1.86 10.09 -39.71 -0.40 -2.27 16 23 C 0.13 1.67 7.32 -84.03 -0.62 1.06 16 24 N -0.57 -7.14 6.05 -7.31 -0.04 -7.18 16 25 H 0.42 4.26 8.12 -40.82 -0.33 3.93 16 26 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.38 6.28 7.59 -40.82 -0.31 5.97 16 33 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 34 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -29.90 304.90 -7.83 -37.73 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.12 Total: 9.35 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.52 Total: -4.50 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.16 Total: -50.51 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.90 -7.83 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935401221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.396 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds