Wall clock time and date at job start Mon Mar 30 2020 01:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46925 * 2 1 4 4 C 1.34327 * 126.44653 * 89.98201 * 3 2 1 5 5 N 1.34472 * 107.67005 * 180.02562 * 4 3 2 6 6 C 1.30258 * 108.70247 * 0.02562 * 5 4 3 7 7 C 1.50702 * 125.61823 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47402 * 89.97212 * 7 6 5 9 9 C 1.38824 * 120.00111 * 179.97438 * 8 7 6 10 10 C 1.39798 * 119.58401 * 0.02562 * 9 8 7 11 11 C 1.38591 * 119.49084 * 179.97438 * 10 9 8 12 12 C 1.38390 * 118.68004 * 359.97438 * 11 10 9 13 13 C 1.40554 * 119.15058 * 0.02562 * 12 11 10 14 14 C 1.41307 * 119.78426 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00497 * 0.02562 * 14 13 12 16 16 C 1.40027 * 120.00040 * 179.97438 * 14 13 12 17 17 N 1.30739 * 120.00256 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47052 * 90.00631 * 18 16 14 20 20 H 1.48506 * 109.46965 * 210.00423 * 18 16 14 21 21 H 1.48496 * 109.47265 * 330.00231 * 18 16 14 22 22 N 1.31949 * 119.58270 * 179.73045 * 9 8 7 23 23 O 1.33964 * 108.75916 * 359.97438 * 6 5 4 24 24 H 1.08992 * 109.47385 * 60.00094 * 1 2 3 25 25 H 1.09007 * 109.47028 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47379 * 299.99824 * 1 2 3 27 27 H 1.08999 * 109.46938 * 240.00338 * 2 1 3 28 28 H 1.09001 * 109.47112 * 119.99958 * 2 1 3 29 29 H 1.08005 * 126.15994 * 0.05987 * 4 3 2 30 30 H 1.09000 * 109.46507 * 209.97522 * 7 6 5 31 31 H 1.09003 * 109.46764 * 329.97487 * 7 6 5 32 32 H 0.96999 * 119.99870 * 0.02562 * 8 7 6 33 33 H 1.07999 * 120.25116 * 359.95750 * 10 9 8 34 34 H 1.08001 * 120.65899 * 180.02562 * 11 10 9 35 35 H 1.08005 * 120.42106 * 179.97438 * 12 11 10 36 36 H 0.96994 * 120.00589 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2979 2.1733 1.0805 5 7 2.7219 3.3738 0.6477 6 6 2.7209 3.3724 -0.6549 7 6 3.1288 4.5264 -1.5341 8 7 4.5631 4.4401 -1.8190 9 6 5.1716 5.4004 -2.6158 10 6 4.4073 6.4464 -3.1413 11 6 5.0168 7.4043 -3.9360 12 6 6.3736 7.2947 -4.1858 13 6 7.0877 6.2198 -3.6288 14 6 8.4733 6.0946 -3.8756 15 1 8.9805 6.8236 -4.4903 16 6 9.1893 5.0258 -3.3225 17 7 8.5756 4.1435 -2.5780 18 14 11.0213 4.8606 -3.6483 19 1 11.7783 5.5872 -2.5975 20 1 11.4002 3.4249 -3.6281 21 1 11.3416 5.4384 -4.9782 22 7 6.4651 5.3176 -2.8627 23 8 2.2985 2.1757 -1.0841 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1909 1.8687 2.1112 30 1 2.5695 4.4862 -2.4689 31 1 2.9157 5.4654 -1.0232 32 1 5.0876 3.7115 -1.4516 33 1 3.3500 6.5073 -2.9298 34 1 4.4445 8.2206 -4.3514 35 1 6.8771 8.0253 -4.8017 36 1 9.0714 3.4030 -2.1952 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116890877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:47 Heat of formation + Delta-G solvation = 58.215445 kcal Electronic energy + Delta-G solvation = -19729.740886 eV Core-core repulsion = 16601.562664 eV Total energy + Delta-G solvation = -3128.178222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.34999 -38.29173 -35.52313 -34.70199 -34.30644 -33.24804 -30.67390 -29.99686 -28.41018 -26.00776 -25.34741 -23.71905 -22.17961 -21.50035 -20.93666 -20.36514 -17.48414 -17.20772 -16.71914 -16.09056 -15.18777 -15.03261 -14.74963 -14.61538 -14.19672 -13.75456 -13.39029 -13.32518 -13.22620 -12.78103 -12.57179 -12.09416 -11.94230 -11.81889 -11.51821 -11.30764 -11.19162 -10.98250 -10.63795 -10.47904 -10.46030 -9.93983 -9.53920 -8.94654 -8.78038 -7.92912 -7.52507 -6.59453 -6.32651 -4.47535 1.34921 2.55796 2.64950 2.87662 3.12226 3.15382 3.22532 3.29640 3.95404 3.99293 4.32834 4.51504 4.72219 4.83820 4.86435 4.99020 5.15681 5.38345 5.46714 5.56222 5.66002 5.77365 5.86315 6.01508 6.07053 6.13456 6.26133 6.53031 6.81938 6.85710 6.90434 7.24189 7.55812 7.74102 7.77371 7.88702 8.13667 8.30918 8.60091 8.79194 9.08837 10.23106 10.39812 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021575 B = 0.003996 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.494422 B = 7005.065067 C = 7964.521467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 C -0.046 4.046 4 C -0.043 4.043 5 N -0.466 5.466 6 C 0.185 3.815 7 C 0.242 3.758 8 N -0.735 5.735 9 C 0.414 3.586 10 C -0.368 4.368 11 C -0.030 4.030 12 C -0.314 4.314 13 C 0.292 3.708 14 C -0.433 4.433 15 H 0.084 0.916 16 C 0.071 3.929 17 N -0.715 5.715 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.262 1.262 22 N -0.529 5.529 23 O -0.194 6.194 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.182 0.818 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.399 0.601 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.013 -7.945 5.000 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 C -0.099 4.099 4 C -0.182 4.182 5 N -0.195 5.195 6 C -0.022 4.022 7 C 0.115 3.885 8 N -0.375 5.375 9 C 0.175 3.825 10 C -0.394 4.394 11 C -0.054 4.054 12 C -0.337 4.337 13 C 0.166 3.834 14 C -0.465 4.465 15 H 0.102 0.898 16 C -0.155 4.155 17 N -0.336 5.336 18 Si 0.730 3.270 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.251 5.251 23 O -0.080 6.080 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.199 0.801 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.497 -8.208 5.754 15.253 hybrid contribution 0.267 -0.292 -0.575 0.698 sum -11.229 -8.500 5.179 15.006 Atomic orbital electron populations 1.21802 0.93743 1.02468 1.02755 1.20058 0.96387 0.86589 1.04519 1.23515 1.05470 0.96200 0.84749 1.23086 1.04818 0.90001 1.00290 1.70489 1.17248 1.22530 1.09233 1.26359 0.99345 0.86163 0.90286 1.19300 0.84158 0.89659 0.95377 1.43966 1.05483 1.30736 1.57315 1.18368 0.90391 0.86034 0.87751 1.20589 0.98643 1.03339 1.16873 1.20588 0.94356 0.95721 0.94782 1.21553 0.94685 1.04551 1.12913 1.18190 0.92969 0.86016 0.86261 1.19594 0.92030 1.08244 1.26594 0.89792 1.26063 1.00274 0.95181 0.93939 1.70144 1.36308 1.07758 1.19435 0.86367 0.82583 0.78141 0.79918 1.19477 1.20267 1.18571 1.68160 1.04986 1.29882 1.22046 1.84429 1.63563 1.23515 1.36477 0.92219 0.91411 0.92091 0.89745 0.88496 0.80072 0.90093 0.88586 0.76581 0.89059 0.88752 0.88587 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.04 -0.31 6.49 -27.88 -0.18 -0.49 16 3 C -0.05 -0.57 6.64 -35.69 -0.24 -0.80 16 4 C -0.04 -0.56 11.80 -17.77 -0.21 -0.77 16 5 N -0.47 -7.64 11.29 -11.10 -0.13 -7.77 16 6 C 0.19 3.00 7.71 -12.94 -0.10 2.90 16 7 C 0.24 4.00 5.50 -5.19 -0.03 3.97 16 8 N -0.74 -15.37 5.71 -61.57 -0.35 -15.72 16 9 C 0.41 10.21 7.65 -155.33 -1.19 9.02 16 10 C -0.37 -8.41 9.34 -38.87 -0.36 -8.77 16 11 C -0.03 -0.69 10.15 -39.39 -0.40 -1.09 16 12 C -0.31 -7.94 9.83 -38.65 -0.38 -8.32 16 13 C 0.29 8.19 6.55 -85.00 -0.56 7.64 16 14 C -0.43 -11.79 9.14 -37.75 -0.34 -12.14 16 15 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 16 C 0.07 1.83 5.50 -17.35 -0.10 1.73 16 17 N -0.71 -19.32 11.46 55.55 0.64 -18.68 16 18 Si 0.91 18.90 29.56 -169.99 -5.02 13.88 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 N -0.53 -14.82 7.89 -10.33 -0.08 -14.91 16 23 O -0.19 -2.96 10.78 5.36 0.06 -2.90 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.18 1.77 8.06 -52.48 -0.42 1.34 16 30 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 31 H 0.10 1.53 7.92 -51.93 -0.41 1.12 16 32 H 0.40 8.67 8.58 -40.82 -0.35 8.32 16 33 H 0.09 1.80 6.68 -52.49 -0.35 1.45 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 36 H 0.27 6.64 8.29 -40.82 -0.34 6.31 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -31.54 316.32 -8.29 -39.83 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.45 Total: 9.28 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -3.72 Total: -7.79 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.08 Total: -57.07 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: 0.06 Total: -2.90 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.54 -8.29 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116890877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.047 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds