Wall clock time and date at job start Mon Mar 30 2020 01:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46925 * 2 1 4 4 C 1.34327 * 126.44653 * 89.98201 * 3 2 1 5 5 N 1.34472 * 107.67005 * 180.02562 * 4 3 2 6 6 C 1.30258 * 108.70247 * 0.02562 * 5 4 3 7 7 C 1.50702 * 125.61823 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47402 * 89.97212 * 7 6 5 9 9 C 1.38824 * 120.00111 * 179.97438 * 8 7 6 10 10 C 1.39798 * 119.58401 * 0.02562 * 9 8 7 11 11 C 1.38591 * 119.49084 * 179.97438 * 10 9 8 12 12 C 1.38390 * 118.68004 * 359.97438 * 11 10 9 13 13 C 1.40554 * 119.15058 * 0.02562 * 12 11 10 14 14 C 1.41307 * 119.78426 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00497 * 0.02562 * 14 13 12 16 16 C 1.40027 * 120.00040 * 179.97438 * 14 13 12 17 17 N 1.30739 * 120.00256 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47052 * 90.00631 * 18 16 14 20 20 H 1.48506 * 109.46965 * 210.00423 * 18 16 14 21 21 H 1.48496 * 109.47265 * 330.00231 * 18 16 14 22 22 N 1.31949 * 119.58270 * 179.73045 * 9 8 7 23 23 O 1.33964 * 108.75916 * 359.97438 * 6 5 4 24 24 H 1.08992 * 109.47385 * 60.00094 * 1 2 3 25 25 H 1.09007 * 109.47028 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47379 * 299.99824 * 1 2 3 27 27 H 1.08999 * 109.46938 * 240.00338 * 2 1 3 28 28 H 1.09001 * 109.47112 * 119.99958 * 2 1 3 29 29 H 1.08005 * 126.15994 * 0.05987 * 4 3 2 30 30 H 1.09000 * 109.46507 * 209.97522 * 7 6 5 31 31 H 1.09003 * 109.46764 * 329.97487 * 7 6 5 32 32 H 0.96999 * 119.99870 * 0.02562 * 8 7 6 33 33 H 1.07999 * 120.25116 * 359.95750 * 10 9 8 34 34 H 1.08001 * 120.65899 * 180.02562 * 11 10 9 35 35 H 1.08005 * 120.42106 * 179.97438 * 12 11 10 36 36 H 0.96994 * 120.00589 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2979 2.1733 1.0805 5 7 2.7219 3.3738 0.6477 6 6 2.7209 3.3724 -0.6549 7 6 3.1288 4.5264 -1.5341 8 7 4.5631 4.4401 -1.8190 9 6 5.1716 5.4004 -2.6158 10 6 4.4073 6.4464 -3.1413 11 6 5.0168 7.4043 -3.9360 12 6 6.3736 7.2947 -4.1858 13 6 7.0877 6.2198 -3.6288 14 6 8.4733 6.0946 -3.8756 15 1 8.9805 6.8236 -4.4903 16 6 9.1893 5.0258 -3.3225 17 7 8.5756 4.1435 -2.5780 18 14 11.0213 4.8606 -3.6483 19 1 11.7783 5.5872 -2.5975 20 1 11.4002 3.4249 -3.6281 21 1 11.3416 5.4384 -4.9782 22 7 6.4651 5.3176 -2.8627 23 8 2.2985 2.1757 -1.0841 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1909 1.8687 2.1112 30 1 2.5695 4.4862 -2.4689 31 1 2.9157 5.4654 -1.0232 32 1 5.0876 3.7115 -1.4516 33 1 3.3500 6.5073 -2.9298 34 1 4.4445 8.2206 -4.3514 35 1 6.8771 8.0253 -4.8017 36 1 9.0714 3.4030 -2.1952 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116890877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:47 Heat of formation + Delta-G solvation = 36.875916 kcal Electronic energy + Delta-G solvation = -19730.666237 eV Core-core repulsion = 16601.562664 eV Total energy + Delta-G solvation = -3129.103574 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.45964 -40.15082 -37.08181 -35.84373 -35.37390 -34.91782 -32.43444 -31.63646 -29.83568 -27.41749 -27.11923 -24.58630 -23.56223 -23.11016 -22.31964 -21.85684 -19.33266 -18.61929 -17.97792 -17.48672 -16.71556 -16.45554 -16.08841 -15.97379 -15.50346 -15.15947 -15.01940 -14.79114 -14.22553 -14.14222 -13.80071 -13.53996 -13.46000 -12.86422 -12.72873 -12.63016 -12.58553 -12.50073 -12.22314 -12.13880 -11.75010 -11.56006 -11.34839 -10.74380 -9.85776 -9.81893 -9.46487 -8.40674 -8.23566 -6.48317 0.24006 1.05005 1.33898 1.41254 1.46108 1.54565 1.56735 1.58671 2.24823 2.64172 2.91590 2.95812 3.66825 3.96870 4.00185 4.08690 4.21894 4.28519 4.39280 4.43532 4.49416 4.70054 4.76553 4.87660 4.96431 4.97640 5.01173 5.06904 5.17023 5.20433 5.30959 5.33400 5.69179 5.95375 6.02357 6.20054 6.46747 6.62132 6.73543 6.87151 7.14929 8.31594 8.50266 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021575 B = 0.003996 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.494422 B = 7005.065067 C = 7964.521467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.036 4.036 4 C -0.058 4.058 5 N -0.487 5.487 6 C 0.163 3.837 7 C 0.244 3.756 8 N -0.734 5.734 9 C 0.396 3.604 10 C -0.364 4.364 11 C -0.027 4.027 12 C -0.340 4.340 13 C 0.258 3.742 14 C -0.470 4.470 15 H 0.089 0.911 16 C 0.025 3.975 17 N -0.755 5.755 18 Si 0.987 3.013 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.254 1.254 22 N -0.566 5.566 23 O -0.207 6.207 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.213 0.787 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.391 0.609 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.022 -8.762 5.411 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.089 4.089 4 C -0.197 4.197 5 N -0.218 5.218 6 C -0.043 4.043 7 C 0.119 3.881 8 N -0.371 5.371 9 C 0.156 3.844 10 C -0.389 4.389 11 C -0.051 4.051 12 C -0.363 4.363 13 C 0.131 3.869 14 C -0.502 4.502 15 H 0.107 0.893 16 C -0.197 4.197 17 N -0.377 5.377 18 Si 0.807 3.193 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.178 1.178 22 N -0.289 5.289 23 O -0.094 6.094 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.143 0.857 29 H 0.230 0.770 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.224 0.776 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.561 -9.024 6.167 16.651 hybrid contribution 0.378 -0.098 -0.625 0.737 sum -12.183 -9.122 5.542 16.197 Atomic orbital electron populations 1.21792 0.92526 1.03839 1.02241 1.20358 0.97272 0.83908 1.06013 1.24427 1.03374 0.97328 0.83806 1.23634 1.04990 0.89101 1.01996 1.70444 1.17482 1.24365 1.09489 1.26087 1.01281 0.86664 0.90258 1.19387 0.81671 0.90560 0.96440 1.44110 1.07159 1.29525 1.56289 1.18795 0.90072 0.87282 0.88222 1.20990 1.00213 1.02186 1.15543 1.21037 0.93733 0.96500 0.93857 1.21732 0.96026 1.04580 1.13918 1.18675 0.93967 0.87137 0.87075 1.19959 0.92645 1.09576 1.28036 0.89318 1.26990 1.05312 0.94224 0.93144 1.70257 1.38446 1.08461 1.20522 0.85151 0.75834 0.78354 0.79957 1.18875 1.19444 1.17802 1.68110 1.06803 1.30854 1.23127 1.84423 1.63656 1.23539 1.37742 0.93593 0.89107 0.91767 0.89474 0.85741 0.77047 0.88466 0.87802 0.77559 0.85588 0.84774 0.87687 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.89 71.98 0.71 -0.91 16 2 C -0.04 -0.52 6.49 29.85 0.19 -0.33 16 3 C -0.04 -0.84 6.64 24.79 0.16 -0.67 16 4 C -0.06 -1.45 11.80 83.39 0.98 -0.46 16 5 N -0.49 -15.73 11.29 -303.83 -3.43 -19.16 16 6 C 0.16 5.23 7.71 88.34 0.68 5.91 16 7 C 0.24 7.96 5.50 85.63 0.47 8.43 16 8 N -0.73 -31.02 5.71 -348.72 -1.99 -33.01 16 9 C 0.40 19.73 7.65 133.42 1.02 20.75 16 10 C -0.36 -16.14 9.34 22.73 0.21 -15.93 16 11 C -0.03 -1.21 10.15 22.39 0.23 -0.98 16 12 C -0.34 -17.34 9.83 22.87 0.22 -17.12 16 13 C 0.26 14.93 6.55 40.17 0.26 15.20 16 14 C -0.47 -26.46 9.14 23.46 0.21 -26.25 16 15 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 16 C 0.02 1.31 5.50 85.29 0.47 1.78 16 17 N -0.75 -42.10 11.46 21.84 0.25 -41.85 16 18 Si 0.99 39.40 29.56 68.60 2.03 41.42 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 22 N -0.57 -32.72 7.89 -186.59 -1.47 -34.19 16 23 O -0.21 -6.21 10.78 -3.73 -0.04 -6.25 16 24 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.21 3.61 8.06 -2.91 -0.02 3.59 16 30 H 0.10 2.83 7.92 -2.39 -0.02 2.81 16 31 H 0.10 3.20 7.92 -2.39 -0.02 3.18 16 32 H 0.39 17.56 8.58 -92.71 -0.80 16.77 16 33 H 0.13 4.62 6.68 -2.91 -0.02 4.60 16 34 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 35 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 36 H 0.27 13.93 8.29 -92.71 -0.77 13.16 16 Total: -1.00 -70.66 316.32 1.49 -69.17 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.31 Total: 34.45 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 5.84 Total: -10.59 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -6.65 Total: -128.20 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.04 Total: -6.25 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.42 kcal Total: -70.66 1.49 -69.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116890877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.044 kcal (2) G-P(sol) polarization free energy of solvation -70.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds