Wall clock time and date at job start Mon Mar 30 2020 01:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33483 * 125.69878 * 2 1 4 4 C 1.32509 * 109.15092 * 180.02562 * 3 2 1 5 5 C 1.41497 * 132.32971 * 179.97438 * 4 3 2 6 6 N 1.39856 * 120.39481 * 359.97438 * 5 4 3 7 7 C 1.34780 * 120.00179 * 214.32428 * 6 5 4 8 8 O 1.21291 * 119.99554 * 355.57382 * 7 6 5 9 9 C 1.50697 * 119.99872 * 175.28926 * 7 6 5 10 10 C 1.50705 * 109.46943 * 180.27699 * 9 7 6 11 11 H 1.07997 * 119.99541 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99815 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99650 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00275 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46842 * 89.99245 * 14 12 10 16 16 H 1.48495 * 109.46980 * 209.99582 * 14 12 10 17 17 H 1.48504 * 109.46832 * 329.99518 * 14 12 10 18 18 C 1.36620 * 119.20632 * 179.73041 * 5 4 3 19 19 C 1.40380 * 119.63093 * 0.27177 * 18 5 4 20 20 C 1.34943 * 120.36946 * 0.02562 * 19 18 5 21 21 N 1.36661 * 120.74336 * 359.97438 * 20 19 18 22 22 C 1.35141 * 125.70290 * 180.58529 * 2 1 3 23 23 C 1.50700 * 126.41511 * 359.42860 * 22 2 1 24 24 H 1.09004 * 109.47191 * 89.97573 * 1 2 3 25 25 H 1.08995 * 109.47222 * 209.97503 * 1 2 3 26 26 H 1.08993 * 109.47497 * 329.97862 * 1 2 3 27 27 H 0.96997 * 120.00222 * 34.33273 * 6 5 4 28 28 H 1.09004 * 109.47118 * 300.27674 * 9 7 6 29 29 H 1.08996 * 109.46950 * 60.28015 * 9 7 6 30 30 H 0.97006 * 119.99736 * 180.02562 * 13 12 10 31 31 H 1.08003 * 120.18000 * 180.30114 * 18 5 4 32 32 H 1.07995 * 119.81639 * 179.97438 * 19 18 5 33 33 H 1.08009 * 119.62729 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.47049 * 270.68186 * 23 22 2 35 35 H 1.08999 * 109.47102 * 30.68301 * 23 22 2 36 36 H 1.08999 * 109.47356 * 150.68481 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0840 0.0000 4 6 3.5561 0.7066 -0.0006 5 6 4.7674 1.4380 -0.0013 6 7 4.7497 2.8364 -0.0020 7 6 5.7048 3.5222 -0.6608 8 8 6.6241 2.9297 -1.1852 9 6 5.6270 5.0244 -0.7513 10 6 6.8025 5.5416 -1.5400 11 1 7.5325 4.8515 -1.9363 12 6 6.9452 6.8958 -1.7563 13 7 7.9713 7.3472 -2.4441 14 14 5.6821 8.0895 -1.0714 15 1 6.0917 8.5158 0.2909 16 1 5.5937 9.2784 -1.9566 17 1 4.3568 7.4229 -1.0039 18 6 5.9545 0.7617 0.0039 19 6 5.9535 -0.6421 0.0040 20 6 4.7888 -1.3236 -0.0015 21 7 3.5927 -0.6625 -0.0067 22 6 2.2957 -1.0974 -0.0112 23 6 1.8330 -2.5316 -0.0138 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3634 0.8897 0.5141 27 1 4.0500 3.3128 0.4716 28 1 4.7008 5.3109 -1.2496 29 1 5.6468 5.4503 0.2518 30 1 8.0720 8.3000 -2.5961 31 1 6.8884 1.3041 0.0083 32 1 6.8901 -1.1798 0.0076 33 1 4.8020 -2.4036 -0.0018 34 1 1.7181 -2.8781 1.0132 35 1 0.8761 -2.6037 -0.5308 36 1 2.5701 -3.1503 -0.5256 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143193737.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:16 Heat of formation + Delta-G solvation = 48.000601 kcal Electronic energy + Delta-G solvation = -20183.140490 eV Core-core repulsion = 17054.519319 eV Total energy + Delta-G solvation = -3128.621171 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.87217 -39.54079 -37.26302 -35.04262 -32.95637 -32.72170 -32.32081 -30.23550 -29.04015 -28.10338 -26.30337 -23.87117 -22.59230 -22.03523 -20.51880 -19.63445 -17.83469 -17.26864 -16.70245 -16.37189 -16.13850 -15.45896 -15.25393 -14.49463 -14.28820 -13.59198 -13.44642 -13.39809 -13.20966 -13.18486 -12.98796 -12.45604 -12.25813 -12.18436 -12.11642 -11.79804 -11.42909 -11.06733 -10.85965 -10.59929 -10.07417 -10.01806 -9.43925 -9.33054 -8.96859 -8.61559 -8.39035 -7.39334 -6.07075 -4.07950 0.82798 1.30006 2.47522 2.77427 3.20965 3.27624 3.34158 3.34471 3.50575 3.73212 4.11489 4.38253 4.47921 4.57418 4.82004 4.98133 5.04723 5.20852 5.23683 5.25930 5.33263 5.51986 5.55524 5.68143 5.77298 5.81968 5.95853 6.15765 6.22891 6.47853 6.54957 6.61605 6.83208 6.94472 7.07118 7.44840 7.87335 7.87715 8.48149 8.81166 9.10920 9.50254 11.05549 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027856 B = 0.004294 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.925208 B = 6519.370489 C = 7368.578354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.055 3.945 3 N -0.486 5.486 4 C 0.213 3.787 5 C 0.200 3.800 6 N -0.672 5.672 7 C 0.523 3.477 8 O -0.508 6.508 9 C -0.026 4.026 10 C -0.517 4.517 11 H 0.093 0.907 12 C 0.071 3.929 13 N -0.895 5.895 14 Si 0.873 3.127 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.134 4.134 19 C -0.103 4.103 20 C 0.010 3.990 21 N -0.343 5.343 22 C -0.077 4.077 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.414 0.586 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.889 -19.465 8.031 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 N -0.207 5.207 4 C -0.032 4.032 5 C 0.100 3.900 6 N -0.317 5.317 7 C 0.314 3.686 8 O -0.381 6.381 9 C -0.066 4.066 10 C -0.555 4.555 11 H 0.111 0.889 12 C -0.131 4.131 13 N -0.533 5.533 14 Si 0.700 3.300 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.190 1.190 18 C -0.162 4.162 19 C -0.124 4.124 20 C -0.112 4.112 21 N -0.015 5.015 22 C -0.190 4.190 23 C -0.124 4.124 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.250 0.750 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.170 0.830 33 H 0.176 0.824 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.411 -18.853 7.527 23.793 hybrid contribution -0.582 0.143 0.448 0.748 sum -12.993 -18.710 7.975 24.135 Atomic orbital electron populations 1.20109 0.87038 1.02934 1.02579 1.20647 0.96561 0.87479 1.03268 1.70555 0.97945 1.29331 1.22819 1.20473 0.93627 0.80739 1.08404 1.16520 0.88913 0.84467 1.00064 1.43893 1.31827 1.02683 1.53310 1.21790 0.79884 0.91783 0.75122 1.90573 1.32573 1.70599 1.44333 1.19719 1.01068 0.86164 0.99611 1.20946 1.07781 0.93307 1.33441 0.88861 1.24950 0.95386 0.97972 0.94792 1.69890 1.29176 1.14283 1.39943 0.86899 0.82515 0.81231 0.79353 1.20017 1.21020 1.18952 1.21271 0.98549 0.93599 1.02747 1.20726 0.97126 0.94207 1.00373 1.21424 0.82930 0.98468 1.08396 1.42396 1.05697 1.07904 1.45494 1.20875 0.81202 0.97940 1.18967 1.20116 1.01635 0.88282 1.02413 0.90953 0.91057 0.90721 0.74961 0.92942 0.93437 0.92489 0.82136 0.83015 0.82413 0.91216 0.89949 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.03 36.01 0.36 -0.29 16 2 C 0.05 0.74 7.06 -82.98 -0.59 0.16 16 3 N -0.49 -8.18 11.31 -8.90 -0.10 -8.28 16 4 C 0.21 3.58 7.75 -155.97 -1.21 2.37 16 5 C 0.20 3.48 6.34 -83.54 -0.53 2.95 16 6 N -0.67 -12.16 5.35 -9.76 -0.05 -12.21 16 7 C 0.52 11.48 7.67 -10.99 -0.08 11.39 16 8 O -0.51 -12.58 12.90 5.55 0.07 -12.51 16 9 C -0.03 -0.61 4.53 -29.03 -0.13 -0.74 16 10 C -0.52 -14.92 9.48 -34.44 -0.33 -15.25 16 11 H 0.09 3.03 7.00 -52.49 -0.37 2.67 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.89 -27.57 13.96 55.43 0.77 -26.79 16 14 Si 0.87 20.80 27.47 -169.99 -4.67 16.13 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 18 C -0.13 -2.15 8.74 -39.36 -0.34 -2.49 16 19 C -0.10 -1.24 9.98 -39.95 -0.40 -1.63 16 20 C 0.01 0.11 10.85 -16.57 -0.18 -0.07 16 21 N -0.34 -4.82 2.95 -58.30 -0.17 -4.99 16 22 C -0.08 -0.95 7.03 -81.48 -0.57 -1.52 16 23 C -0.07 -0.50 9.90 36.01 0.36 -0.15 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.49 7.78 -51.93 -0.40 0.08 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.41 6.56 8.83 -40.82 -0.36 6.20 16 28 H 0.05 1.18 7.20 -51.93 -0.37 0.81 16 29 H 0.05 1.02 7.57 -51.93 -0.39 0.63 16 30 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.16 2.82 6.19 -52.48 -0.32 2.50 16 32 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.16 1.18 8.06 -52.48 -0.42 0.75 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.50 7.79 -51.93 -0.40 0.09 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -35.31 308.86 -7.57 -42.88 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.33 Total: 4.44 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -3.74 Total: -3.31 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.45 Total: -52.28 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.31 -7.57 -42.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143193737.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.881 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds