Wall clock time and date at job start Mon Mar 30 2020 01:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38238 * 126.03668 * 2 1 4 4 C 1.41183 * 134.72275 * 359.97438 * 3 2 1 5 5 C 1.35519 * 119.63695 * 180.02562 * 4 3 2 6 6 C 1.40255 * 121.66121 * 0.02562 * 5 4 3 7 7 N 1.39903 * 119.17517 * 180.02562 * 6 5 4 8 8 C 1.34772 * 119.99938 * 324.63793 * 7 6 5 9 9 O 1.21292 * 120.00276 * 4.43728 * 8 7 6 10 10 C 1.50697 * 120.00284 * 184.43935 * 8 7 6 11 11 C 1.50700 * 109.47297 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00122 * 359.97438 * 11 10 8 13 13 C 1.37883 * 120.00143 * 179.97438 * 11 10 8 14 14 N 1.31514 * 119.99705 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00128 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47108 * 60.00549 * 15 13 11 17 17 H 1.48504 * 109.47271 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47517 * 300.00614 * 15 13 11 19 19 C 1.36262 * 121.65509 * 0.27681 * 6 5 4 20 20 C 1.41074 * 119.54494 * 359.46031 * 19 6 5 21 21 N 1.32097 * 134.60549 * 180.17797 * 20 19 6 22 22 N 1.33992 * 126.04164 * 179.97438 * 2 1 3 23 23 C 1.46504 * 125.02086 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.47021 * 90.00372 * 1 2 3 25 25 H 1.08996 * 109.47311 * 209.99950 * 1 2 3 26 26 H 1.09002 * 109.47443 * 330.00499 * 1 2 3 27 27 H 1.08000 * 120.18730 * 0.02828 * 4 3 2 28 28 H 1.07997 * 119.16891 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00093 * 144.36192 * 7 6 5 30 30 H 1.09006 * 109.47155 * 299.99748 * 10 8 7 31 31 H 1.09000 * 109.47219 * 59.99933 * 10 8 7 32 32 H 0.96998 * 120.00005 * 179.97438 * 14 13 11 33 33 H 1.07993 * 120.22581 * 179.71825 * 19 6 5 34 34 H 1.09002 * 109.46326 * 90.00113 * 23 22 2 35 35 H 1.08994 * 109.47311 * 210.00003 * 23 22 2 36 36 H 1.08997 * 109.47128 * 330.00640 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3202 1.1178 0.0000 4 6 2.0935 2.5114 -0.0004 5 6 3.1485 3.3619 -0.0008 6 6 4.4709 2.8947 -0.0013 7 7 5.5209 3.8192 -0.0011 8 6 5.3975 4.9792 -0.6761 9 8 4.3480 5.2577 -1.2165 10 6 6.5635 5.9302 -0.7595 11 6 6.1670 7.1419 -1.5630 12 1 5.1705 7.2157 -1.9727 13 6 7.0765 8.1563 -1.7751 14 7 8.2899 8.0666 -1.2758 15 14 6.5853 9.6579 -2.7717 16 1 5.4393 10.3355 -2.1137 17 1 7.7339 10.5957 -2.8528 18 1 6.1919 9.2367 -4.1403 19 6 4.7587 1.5628 -0.0070 20 6 3.7061 0.6236 -0.0011 21 7 3.6401 -0.6957 -0.0010 22 7 2.2953 -1.0834 0.0005 23 6 1.8199 -2.4692 0.0016 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.0849 2.8975 -0.0005 28 1 2.9664 4.4265 -0.0016 29 1 6.3362 3.6271 0.4881 30 1 6.8527 6.2395 0.2450 31 1 7.4044 5.4326 -1.2426 32 1 8.9298 8.7800 -1.4253 33 1 5.7856 1.2285 -0.0119 34 1 1.7017 -2.8135 -1.0258 35 1 2.5439 -3.1013 0.5156 36 1 0.8603 -2.5236 0.5157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:12 Heat of formation + Delta-G solvation = 32.894176 kcal Electronic energy + Delta-G solvation = -19765.264502 eV Core-core repulsion = 16635.988268 eV Total energy + Delta-G solvation = -3129.276235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.36364 -41.04430 -38.26938 -35.42775 -35.11324 -34.22195 -32.53040 -31.24106 -30.56190 -27.92087 -27.53729 -25.78680 -23.58629 -23.18764 -21.45318 -20.27261 -18.99931 -18.40026 -18.07678 -17.32991 -16.96999 -16.74346 -16.46815 -16.07209 -15.18734 -14.99808 -14.89024 -14.49886 -14.20759 -14.11703 -13.96061 -13.79050 -13.33776 -13.23772 -12.92560 -12.79129 -12.70949 -12.60123 -12.38886 -12.02736 -11.47469 -11.31582 -11.17521 -10.75275 -10.61382 -10.51603 -9.07230 -8.51601 -8.24761 -6.32308 -0.37088 0.74247 1.39576 1.41973 1.44891 1.47075 1.53458 1.82112 2.20792 2.46518 2.87320 3.11118 3.26446 3.58470 3.98549 4.01255 4.20892 4.26995 4.34673 4.36757 4.56435 4.59578 4.63615 4.75784 4.76628 5.04774 5.07805 5.13127 5.23250 5.31911 5.44195 5.46779 5.60945 5.73205 5.96412 6.02522 6.06954 6.58259 6.66367 6.81130 7.29217 7.40658 8.87278 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044949 B = 0.003347 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.782365 B = 8363.611671 C = 8798.312617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.128 3.872 3 C -0.248 4.248 4 C -0.012 4.012 5 C -0.185 4.185 6 C 0.199 3.801 7 N -0.674 5.674 8 C 0.522 3.478 9 O -0.553 6.553 10 C 0.011 3.989 11 C -0.538 4.538 12 H 0.059 0.941 13 C 0.010 3.990 14 N -0.925 5.925 15 Si 0.966 3.034 16 H -0.270 1.270 17 H -0.275 1.275 18 H -0.273 1.273 19 C -0.172 4.172 20 C 0.104 3.896 21 N -0.358 5.358 22 N -0.326 5.326 23 C 0.077 3.923 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.154 0.846 28 H 0.120 0.880 29 H 0.422 0.578 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.268 0.732 33 H 0.135 0.865 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.363 -20.951 5.402 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.011 4.011 3 C -0.258 4.258 4 C -0.033 4.033 5 C -0.206 4.206 6 C 0.100 3.900 7 N -0.320 5.320 8 C 0.313 3.687 9 O -0.430 6.430 10 C -0.029 4.029 11 C -0.576 4.576 12 H 0.077 0.923 13 C -0.188 4.188 14 N -0.565 5.565 15 Si 0.790 3.210 16 H -0.196 1.196 17 H -0.200 1.200 18 H -0.198 1.198 19 C -0.197 4.197 20 C -0.048 4.048 21 N -0.187 5.187 22 N -0.100 5.100 23 C -0.062 4.062 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.172 0.828 28 H 0.138 0.862 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.218 -21.915 5.008 27.720 hybrid contribution 0.591 1.513 -0.248 1.643 sum -15.627 -20.402 4.760 26.136 Atomic orbital electron populations 1.20786 0.82513 1.06296 1.05385 1.21884 0.96289 0.85600 0.97362 1.19679 0.92392 0.94699 1.19015 1.20341 0.99292 0.89506 0.94152 1.20720 0.91430 1.00882 1.07521 1.17445 0.88412 0.88356 0.95759 1.43795 1.18601 1.17787 1.51829 1.21727 0.90547 0.80951 0.75483 1.90515 1.30802 1.75313 1.46330 1.19103 0.91614 0.92942 0.99218 1.21338 0.99253 1.03368 1.33658 0.92284 1.25793 0.94742 1.01424 0.96880 1.70024 1.05372 1.34868 1.46192 0.85491 0.77923 0.78507 0.79065 1.19556 1.20017 1.19797 1.19373 0.97905 0.89170 1.13204 1.20648 0.94549 0.91274 0.98350 1.77635 0.95162 1.11480 1.34400 1.48834 1.03460 1.08297 1.49409 1.22510 1.02617 0.75374 1.05660 0.87946 0.87587 0.88213 0.82809 0.86192 0.73944 0.93287 0.93600 0.92348 0.84712 0.88427 0.88529 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.09 71.23 0.72 -0.01 16 2 C 0.13 2.54 6.98 42.23 0.29 2.84 16 3 C -0.25 -7.07 6.26 -20.22 -0.13 -7.20 16 4 C -0.01 -0.36 10.08 22.36 0.23 -0.13 16 5 C -0.18 -6.72 8.53 22.13 0.19 -6.53 16 6 C 0.20 7.33 6.23 37.88 0.24 7.56 16 7 N -0.67 -25.32 5.30 -304.38 -1.61 -26.93 16 8 C 0.52 24.53 7.65 87.66 0.67 25.20 16 9 O -0.55 -29.13 12.83 -3.07 -0.04 -29.17 16 10 C 0.01 0.55 5.46 29.10 0.16 0.71 16 11 C -0.54 -31.68 8.92 25.60 0.23 -31.45 16 12 H 0.06 3.62 6.75 -2.91 -0.02 3.60 16 13 C 0.01 0.59 5.46 84.66 0.46 1.06 16 14 N -0.92 -54.34 13.29 21.45 0.28 -54.06 16 15 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 19 C -0.17 -5.86 9.95 22.51 0.22 -5.64 16 20 C 0.10 3.46 7.49 42.14 0.32 3.78 16 21 N -0.36 -11.02 12.54 -48.73 -0.61 -11.63 16 22 N -0.33 -6.84 3.95 -354.35 -1.40 -8.23 16 23 C 0.08 0.66 11.17 127.77 1.43 2.09 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.11 0.18 6.94 -2.39 -0.02 0.17 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.12 4.89 6.13 -2.91 -0.02 4.88 16 29 H 0.42 13.05 8.81 -92.71 -0.82 12.23 16 30 H 0.05 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.13 0.11 6.90 -2.39 -0.02 0.09 16 Total: -1.00 -79.60 311.83 3.97 -75.62 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.30 Total: 14.70 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 5.02 Total: -7.72 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -3.34 Total: -100.85 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.04 Total: -29.17 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -79.60 3.97 -75.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.518 kcal (2) G-P(sol) polarization free energy of solvation -79.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds