Wall clock time and date at job start Mon Mar 30 2020 00:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00052 * 2 1 4 4 H 1.48507 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47631 * 300.00237 * 3 2 1 6 6 H 1.48507 * 109.47239 * 60.00539 * 3 2 1 7 7 C 1.37878 * 119.99540 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99707 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00303 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47102 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47352 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99709 * 180.02562 * 12 11 10 14 14 O 1.21479 * 120.00144 * 0.02562 * 13 12 11 15 15 C 1.48385 * 119.99614 * 179.97438 * 13 12 11 16 16 C 1.39951 * 120.84718 * 0.02562 * 15 13 12 17 17 C 1.36146 * 120.83039 * 179.97438 * 16 15 13 18 18 N 1.34058 * 122.60203 * 0.03341 * 17 16 15 19 19 H 0.97001 * 119.60579 * 180.02562 * 18 17 16 20 20 C 1.36532 * 120.79841 * 359.97438 * 18 17 16 21 21 N 1.32184 * 134.81610 * 179.97438 * 20 18 17 22 22 C 1.33315 * 110.80222 * 180.02562 * 21 20 18 23 23 C 1.36163 * 110.88008 * 0.27365 * 22 21 20 24 24 C 1.40092 * 120.84211 * 179.97438 * 15 13 12 25 25 H 0.97002 * 119.99634 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46851 * 59.99967 * 9 7 2 27 27 H 1.08988 * 109.47035 * 299.99810 * 9 7 2 28 28 H 1.09001 * 109.47166 * 60.00472 * 10 9 7 29 29 H 1.09000 * 109.47746 * 299.99654 * 10 9 7 30 30 H 1.08993 * 109.46968 * 59.99860 * 11 10 9 31 31 H 1.09004 * 109.46895 * 300.00462 * 11 10 9 32 32 H 0.96991 * 119.99831 * 359.97438 * 12 11 10 33 33 H 1.08001 * 119.58610 * 359.97438 * 16 15 13 34 34 H 1.08004 * 118.69672 * 179.97438 * 17 16 15 35 35 H 1.08002 * 124.55607 * 179.97438 * 22 21 20 36 36 H 1.07995 * 126.71728 * 179.71273 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 7 2.4322 -6.1007 -0.0031 13 6 1.9828 -7.3713 -0.0042 14 8 0.7885 -7.5933 -0.0052 15 6 2.9471 -8.4992 -0.0054 16 6 4.3266 -8.2638 -0.0049 17 6 5.2110 -9.2989 -0.0054 18 7 4.8216 -10.5817 -0.0072 19 1 5.4894 -11.2852 -0.0072 20 6 3.4964 -10.9100 -0.0081 21 7 2.8175 -12.0441 -0.0102 22 6 1.5050 -11.8103 -0.0106 23 6 1.2503 -10.4727 -0.0148 24 6 2.4995 -9.8267 -0.0061 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8725 -3.6048 0.8877 29 1 2.8712 -3.6041 -0.8923 30 1 0.8532 -5.0442 -0.8922 31 1 0.8538 -5.0455 0.8877 32 1 3.3857 -5.9234 -0.0034 33 1 4.6943 -7.2483 -0.0039 34 1 6.2682 -9.0778 -0.0054 35 1 0.7459 -12.5785 -0.0126 36 1 0.2792 -10.0003 -0.0204 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150972110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:56 Heat of formation + Delta-G solvation = 39.833318 kcal Electronic energy + Delta-G solvation = -19405.826768 eV Core-core repulsion = 16276.851437 eV Total energy + Delta-G solvation = -3128.975331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76427 -39.46390 -38.38282 -35.53300 -34.27174 -33.28822 -31.22401 -29.78744 -28.96942 -27.10655 -25.09526 -22.99570 -22.95709 -21.24590 -20.89837 -20.16894 -18.05380 -17.70224 -17.00516 -16.40837 -16.26421 -15.67277 -15.49856 -15.15647 -14.49409 -14.07260 -14.01079 -13.87841 -13.22087 -12.63797 -12.53785 -12.33555 -12.21912 -11.86734 -11.83638 -11.00202 -10.92255 -10.79273 -10.61215 -10.08091 -9.92629 -9.71173 -9.43446 -9.14604 -8.91588 -8.40825 -8.38092 -7.88521 -6.05150 -4.08475 -0.35023 1.12243 2.07120 2.60906 3.08740 3.27475 3.31633 3.35209 3.38127 3.53082 3.89150 4.21381 4.37035 4.41590 4.59933 4.77233 5.01123 5.30836 5.34784 5.55529 5.64917 5.70837 5.78823 5.94353 6.09137 6.26684 6.33169 6.37377 6.52999 6.63891 6.74330 6.93711 6.96709 7.54319 7.59891 7.71761 7.86875 7.93339 8.20013 8.34189 8.98405 9.55995 11.06163 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041287 B = 0.002901 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.020645 B = 9648.888931 C =10301.158548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.715 5.715 13 C 0.543 3.457 14 O -0.517 6.517 15 C 0.013 3.987 16 C -0.199 4.199 17 C 0.132 3.868 18 N -0.485 5.485 19 H 0.424 0.576 20 C 0.246 3.754 21 N -0.537 5.537 22 C 0.063 3.937 23 C -0.218 4.218 24 C -0.109 4.109 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.398 0.602 33 H 0.155 0.845 34 H 0.182 0.818 35 H 0.162 0.838 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.282 -19.858 -0.015 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.367 5.367 13 C 0.328 3.672 14 O -0.393 6.393 15 C 0.004 3.996 16 C -0.224 4.224 17 C -0.007 4.007 18 N -0.079 5.079 19 H 0.262 0.738 20 C -0.005 4.005 21 N -0.258 5.258 22 C -0.080 4.080 23 C -0.240 4.240 24 C -0.118 4.118 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.233 0.767 33 H 0.173 0.827 34 H 0.199 0.801 35 H 0.180 0.820 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.550 -20.892 -0.017 24.372 hybrid contribution 0.823 1.632 0.003 1.827 sum 13.373 -19.260 -0.014 23.447 Atomic orbital electron populations 1.69977 1.06067 1.26629 1.50519 1.25037 0.94859 0.99340 0.95259 0.86527 0.80008 0.83754 0.77630 1.19766 1.20987 1.20993 1.21226 0.93005 0.90903 1.50962 0.92585 1.19035 0.93852 0.90815 0.97750 1.21901 0.99826 0.93212 1.00938 1.21744 0.91816 0.84776 1.02396 1.46151 1.11023 1.05589 1.73902 1.18278 0.88100 0.82787 0.78069 1.90777 1.15845 1.84495 1.48183 1.20318 0.93433 0.92971 0.92852 1.20632 0.91465 0.99785 1.10473 1.21737 1.00915 0.81604 0.96483 1.40200 1.06175 1.08438 1.53065 0.73833 1.20542 0.83306 0.93059 1.03551 1.69662 1.05231 1.24763 1.26123 1.22575 0.91227 0.95414 0.98818 1.21575 0.96975 0.94054 1.11416 1.20129 0.94887 0.90784 1.06009 0.92938 0.96211 0.96204 0.92624 0.92631 0.91370 0.91379 0.76694 0.82717 0.80072 0.82038 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 11 C 0.11 1.93 5.67 -4.04 -0.02 1.90 16 12 N -0.72 -9.61 5.51 -61.08 -0.34 -9.94 16 13 C 0.54 8.16 7.81 -12.08 -0.09 8.07 16 14 O -0.52 -9.81 15.37 5.38 0.08 -9.73 16 15 C 0.01 0.16 5.93 -104.38 -0.62 -0.45 16 16 C -0.20 -1.42 9.47 -39.69 -0.38 -1.79 16 17 C 0.13 0.56 11.04 -17.33 -0.19 0.37 16 18 N -0.49 -3.07 5.25 -10.92 -0.06 -3.13 16 19 H 0.42 1.24 8.91 -40.82 -0.36 0.87 16 20 C 0.25 2.93 8.65 -154.25 -1.33 1.60 16 21 N -0.54 -7.43 11.18 -11.04 -0.12 -7.55 16 22 C 0.06 0.86 11.70 -17.65 -0.21 0.65 16 23 C -0.22 -3.24 10.24 -39.42 -0.40 -3.64 16 24 C -0.11 -1.51 6.19 -104.65 -0.65 -2.16 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.52 8.14 -51.94 -0.42 0.10 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.40 3.94 6.58 -40.82 -0.27 3.67 16 33 H 0.16 0.67 6.47 -52.49 -0.34 0.33 16 34 H 0.18 -0.19 8.06 -52.48 -0.42 -0.61 16 35 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.15 2.30 7.33 -52.49 -0.38 1.91 16 LS Contribution 313.26 15.07 4.72 4.72 Total: -1.00 -36.90 313.26 -8.86 -45.77 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.28 Total: -0.01 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -4.58 Total: -10.48 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.22 Total: -46.34 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.90 -8.86 -45.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150972110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.600 kcal (2) G-P(sol) polarization free energy of solvation -36.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds