Wall clock time and date at job start Mon Mar 30 2020 00:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00052 * 2 1 4 4 H 1.48507 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47631 * 300.00237 * 3 2 1 6 6 H 1.48507 * 109.47239 * 60.00539 * 3 2 1 7 7 C 1.37878 * 119.99540 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99707 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00303 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47102 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47352 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99709 * 180.02562 * 12 11 10 14 14 O 1.21479 * 120.00144 * 0.02562 * 13 12 11 15 15 C 1.48385 * 119.99614 * 179.97438 * 13 12 11 16 16 C 1.39951 * 120.84718 * 0.02562 * 15 13 12 17 17 C 1.36146 * 120.83039 * 179.97438 * 16 15 13 18 18 N 1.34058 * 122.60203 * 0.03341 * 17 16 15 19 19 H 0.97001 * 119.60579 * 180.02562 * 18 17 16 20 20 C 1.36532 * 120.79841 * 359.97438 * 18 17 16 21 21 N 1.32184 * 134.81610 * 179.97438 * 20 18 17 22 22 C 1.33315 * 110.80222 * 180.02562 * 21 20 18 23 23 C 1.36163 * 110.88008 * 0.27365 * 22 21 20 24 24 C 1.40092 * 120.84211 * 179.97438 * 15 13 12 25 25 H 0.97002 * 119.99634 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46851 * 59.99967 * 9 7 2 27 27 H 1.08988 * 109.47035 * 299.99810 * 9 7 2 28 28 H 1.09001 * 109.47166 * 60.00472 * 10 9 7 29 29 H 1.09000 * 109.47746 * 299.99654 * 10 9 7 30 30 H 1.08993 * 109.46968 * 59.99860 * 11 10 9 31 31 H 1.09004 * 109.46895 * 300.00462 * 11 10 9 32 32 H 0.96991 * 119.99831 * 359.97438 * 12 11 10 33 33 H 1.08001 * 119.58610 * 359.97438 * 16 15 13 34 34 H 1.08004 * 118.69672 * 179.97438 * 17 16 15 35 35 H 1.08002 * 124.55607 * 179.97438 * 22 21 20 36 36 H 1.07995 * 126.71728 * 179.71273 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 7 2.4322 -6.1007 -0.0031 13 6 1.9828 -7.3713 -0.0042 14 8 0.7885 -7.5933 -0.0052 15 6 2.9471 -8.4992 -0.0054 16 6 4.3266 -8.2638 -0.0049 17 6 5.2110 -9.2989 -0.0054 18 7 4.8216 -10.5817 -0.0072 19 1 5.4894 -11.2852 -0.0072 20 6 3.4964 -10.9100 -0.0081 21 7 2.8175 -12.0441 -0.0102 22 6 1.5050 -11.8103 -0.0106 23 6 1.2503 -10.4727 -0.0148 24 6 2.4995 -9.8267 -0.0061 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8725 -3.6048 0.8877 29 1 2.8712 -3.6041 -0.8923 30 1 0.8532 -5.0442 -0.8922 31 1 0.8538 -5.0455 0.8877 32 1 3.3857 -5.9234 -0.0034 33 1 4.6943 -7.2483 -0.0039 34 1 6.2682 -9.0778 -0.0054 35 1 0.7459 -12.5785 -0.0126 36 1 0.2792 -10.0003 -0.0204 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150972110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:55 Heat of formation + Delta-G solvation = 12.699327 kcal Electronic energy + Delta-G solvation = -19407.003386 eV Core-core repulsion = 16276.851437 eV Total energy + Delta-G solvation = -3130.151949 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.55555 -40.66124 -39.12209 -37.03010 -35.38397 -34.88542 -32.93866 -30.50715 -29.91464 -28.75388 -26.33460 -24.58501 -23.65949 -22.37354 -22.19953 -21.39822 -19.02332 -18.57400 -18.42028 -17.79373 -17.11444 -16.82315 -16.79988 -16.38736 -16.14347 -15.31042 -15.18944 -14.73363 -14.26977 -13.99118 -13.76066 -13.55853 -13.43003 -13.42234 -13.05376 -12.77658 -12.52841 -12.33181 -11.81611 -11.65606 -11.61279 -11.23785 -11.05514 -10.60705 -10.54648 -10.20559 -9.12094 -8.82585 -8.17891 -6.29266 -1.15922 0.50044 1.43789 1.43942 1.48546 1.53949 1.56921 1.94099 2.37354 2.43861 2.60877 3.16519 3.23646 3.53818 3.72173 3.87072 3.99370 4.19224 4.22073 4.44903 4.55437 4.57784 4.88963 4.94247 4.95267 5.00422 5.11496 5.19677 5.35110 5.38644 5.54497 5.72808 5.76141 5.79593 5.86440 6.11205 6.23403 6.46368 6.89309 6.99332 7.09716 7.40700 8.94550 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041287 B = 0.002901 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.020645 B = 9648.888931 C =10301.158548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.127 3.873 12 N -0.696 5.696 13 C 0.538 3.462 14 O -0.569 6.569 15 C 0.005 3.995 16 C -0.201 4.201 17 C 0.185 3.815 18 N -0.461 5.461 19 H 0.446 0.554 20 C 0.231 3.769 21 N -0.559 5.559 22 C 0.046 3.954 23 C -0.255 4.255 24 C -0.158 4.158 25 H 0.262 0.738 26 H -0.010 1.010 27 H -0.010 1.010 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.420 0.580 33 H 0.193 0.807 34 H 0.260 0.740 35 H 0.174 0.826 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.032 -19.261 -0.011 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.178 1.178 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.089 0.911 9 C -0.017 4.017 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.349 5.349 13 C 0.325 3.675 14 O -0.449 6.449 15 C -0.004 4.004 16 C -0.223 4.223 17 C 0.043 3.957 18 N -0.055 5.055 19 H 0.288 0.712 20 C -0.017 4.017 21 N -0.280 5.280 22 C -0.099 4.099 23 C -0.278 4.278 24 C -0.167 4.167 25 H 0.071 0.929 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.259 0.741 33 H 0.210 0.790 34 H 0.276 0.724 35 H 0.191 0.809 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.384 -20.332 -0.013 27.411 hybrid contribution -0.778 1.550 0.002 1.734 sum 17.606 -18.782 -0.011 25.744 Atomic orbital electron populations 1.70132 1.08055 1.27679 1.51933 1.26051 0.95712 1.03671 0.94906 0.85362 0.79384 0.78609 0.77445 1.17788 1.20817 1.20827 1.21726 0.93895 0.91818 1.50044 0.91101 1.18964 0.94554 0.93170 0.94992 1.21599 0.98394 0.91097 1.02676 1.21330 0.92020 0.85439 1.00872 1.45802 1.11596 1.04234 1.73253 1.18869 0.88115 0.83715 0.76825 1.90760 1.18445 1.85271 1.50383 1.20281 0.95181 0.90835 0.94135 1.21191 0.89091 1.02818 1.09226 1.23052 1.03618 0.79530 0.89480 1.40512 1.04514 1.10311 1.50148 0.71221 1.20526 0.85101 0.91690 1.04399 1.69585 1.05185 1.25711 1.27506 1.22716 0.91999 0.95227 0.99972 1.21478 0.96914 0.95142 1.14240 1.20227 0.95101 0.92169 1.09205 0.92913 0.99126 0.99114 0.90732 0.90742 0.93130 0.93135 0.74099 0.78985 0.72430 0.80883 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.78 13.29 21.45 0.28 -56.49 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 4 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.54 -28.95 9.11 25.60 0.23 -28.72 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.10 -3.55 5.27 30.59 0.16 -3.39 16 11 C 0.13 4.30 5.67 86.38 0.49 4.79 16 12 N -0.70 -17.68 5.51 -465.45 -2.57 -20.24 16 13 C 0.54 16.36 7.81 86.95 0.68 17.04 16 14 O -0.57 -23.33 15.37 -3.65 -0.06 -23.39 16 15 C 0.01 0.13 5.93 -19.71 -0.12 0.01 16 16 C -0.20 -1.76 9.47 22.20 0.21 -1.55 16 17 C 0.19 0.18 11.04 83.87 0.93 1.11 16 18 N -0.46 -3.55 5.25 -188.45 -0.99 -4.54 16 19 H 0.45 0.04 8.91 -92.71 -0.83 -0.78 16 20 C 0.23 5.24 8.65 136.10 1.18 6.42 16 21 N -0.56 -15.82 11.18 -188.85 -2.11 -17.94 16 22 C 0.05 1.37 11.70 83.98 0.98 2.35 16 23 C -0.25 -8.53 10.24 22.37 0.23 -8.30 16 24 C -0.16 -4.53 6.19 -19.88 -0.12 -4.65 16 25 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.42 6.65 6.58 -92.71 -0.61 6.04 16 33 H 0.19 0.24 6.47 -2.91 -0.02 0.22 16 34 H 0.26 -3.46 8.06 -2.91 -0.02 -3.48 16 35 H 0.17 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.12 4.45 7.33 -2.91 -0.02 4.43 16 Total: -1.00 -90.32 313.26 1.73 -88.59 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -0.31 Total: 2.82 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 5.46 Total: -13.57 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -5.38 Total: -99.21 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.06 Total: -23.39 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -90.32 1.73 -88.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150972110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.289 kcal (2) G-P(sol) polarization free energy of solvation -90.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds