Wall clock time and date at job start Mon Mar 30 2020 01:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46782 * 2 1 4 4 H 1.09002 * 109.47132 * 304.89270 * 3 2 1 5 5 C 1.50702 * 109.47119 * 184.89995 * 3 2 1 6 6 H 1.08001 * 120.00018 * 245.45407 * 5 3 2 7 7 C 1.37879 * 119.99938 * 65.45011 * 5 3 2 8 8 N 1.31509 * 120.00429 * 9.47139 * 7 5 3 9 9 Si 1.86803 * 119.99880 * 189.47216 * 7 5 3 10 10 H 1.48498 * 109.47409 * 84.99268 * 9 7 5 11 11 H 1.48501 * 109.47256 * 204.99495 * 9 7 5 12 12 H 1.48504 * 109.47141 * 324.99520 * 9 7 5 13 13 N 1.46497 * 109.47462 * 64.89892 * 3 2 1 14 14 C 1.34775 * 119.99615 * 274.99969 * 13 3 2 15 15 O 1.21630 * 120.00372 * 359.97438 * 14 13 3 16 16 C 1.47225 * 119.99749 * 179.97438 * 14 13 3 17 17 C 1.38948 * 120.86317 * 359.97438 * 16 14 13 18 18 C 1.39734 * 119.29697 * 179.72586 * 17 16 14 19 19 C 1.35116 * 121.14185 * 0.27680 * 18 17 16 20 20 N 1.36146 * 121.72268 * 359.95079 * 19 18 17 21 21 C 1.37004 * 132.64345 * 180.02562 * 20 19 18 22 22 C 1.34962 * 107.14792 * 180.02562 * 21 20 19 23 23 N 1.33739 * 108.60939 * 0.02562 * 22 21 20 24 24 C 1.31980 * 109.16864 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47299 * 60.00722 * 1 2 3 26 26 H 1.09004 * 109.46468 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47303 * 300.00248 * 1 2 3 28 28 H 1.09001 * 109.47657 * 239.99601 * 2 1 3 29 29 H 1.08999 * 109.47299 * 119.99277 * 2 1 3 30 30 H 0.97000 * 120.00110 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00283 * 95.00022 * 13 3 2 32 32 H 1.07998 * 120.34883 * 359.97438 * 17 16 14 33 33 H 1.08002 * 119.43341 * 180.25227 * 18 17 16 34 34 H 1.08003 * 119.13574 * 179.97438 * 19 18 17 35 35 H 1.07997 * 126.42509 * 359.96997 * 21 20 19 36 36 H 1.08001 * 125.69642 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9810 -0.8429 5 6 3.5420 1.4444 -0.1214 6 1 4.1492 1.8092 0.6939 7 6 4.1412 0.9802 -1.2732 8 7 3.4098 0.7115 -2.3326 9 14 5.9919 0.7329 -1.3288 10 1 6.3291 -0.6065 -0.7833 11 1 6.4619 0.8276 -2.7343 12 1 6.6561 1.7811 -0.5131 13 7 1.6503 2.0983 1.2507 14 6 0.4328 2.6652 1.3634 15 8 -0.3423 2.6328 0.4266 16 6 0.0409 3.3237 2.6205 17 6 0.9119 3.3708 3.7021 18 6 0.5084 4.0093 4.8777 19 6 -0.7141 4.5754 4.9812 20 7 -1.6038 4.5511 3.9509 21 6 -2.8750 5.0424 3.8106 22 6 -3.2881 4.7274 2.5650 23 7 -2.3079 4.0603 1.9462 24 6 -1.2798 3.9423 2.7653 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.8313 0.3846 -3.1427 31 1 2.2685 2.1245 1.9977 32 1 1.8919 2.9221 3.6335 33 1 1.1852 4.0507 5.7184 34 1 -0.9926 5.0602 5.9052 35 1 -3.4407 5.5801 4.5570 36 1 -4.2497 4.9729 2.1390 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151482812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:37 Heat of formation + Delta-G solvation = 33.151344 kcal Electronic energy + Delta-G solvation = -20642.256003 eV Core-core repulsion = 17512.990920 eV Total energy + Delta-G solvation = -3129.265083 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.62378 -40.61630 -38.11593 -36.87242 -34.71704 -34.11533 -32.78741 -31.12340 -29.87504 -28.75605 -25.81518 -24.81636 -23.54477 -23.04272 -22.01298 -21.21089 -19.43430 -18.41639 -17.91133 -17.38299 -17.02066 -16.86520 -16.21742 -16.10723 -16.03028 -15.02960 -14.94209 -14.59286 -14.42718 -13.92768 -13.52179 -13.43217 -13.26408 -13.03633 -12.88826 -12.81493 -12.59736 -12.19696 -12.08210 -11.84369 -11.60735 -11.08624 -10.99995 -10.62818 -10.50472 -9.78947 -9.63709 -8.85940 -8.16700 -6.30694 -0.59405 0.34876 1.46713 1.48462 1.57527 1.60231 1.89329 2.02059 2.37671 2.61979 2.75956 3.15015 3.20287 3.55368 3.81319 3.93501 3.98509 4.42999 4.44659 4.51076 4.52624 4.62536 4.72192 4.80316 4.99115 5.05008 5.08537 5.22670 5.41529 5.47360 5.52361 5.62795 5.66940 5.74527 5.94589 6.07359 6.14960 6.77600 6.98693 7.04444 7.35572 7.60529 8.92399 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028808 B = 0.004705 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.723921 B = 5949.334336 C = 6532.203829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.971 3.029 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.261 1.261 13 N -0.697 5.697 14 C 0.541 3.459 15 O -0.567 6.567 16 C -0.140 4.140 17 C -0.033 4.033 18 C -0.153 4.153 19 C 0.087 3.913 20 N -0.376 5.376 21 C -0.077 4.077 22 C -0.009 4.009 23 N -0.531 5.531 24 C 0.222 3.778 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.169 0.831 33 H 0.208 0.792 34 H 0.219 0.781 35 H 0.236 0.764 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 8.021 22.056 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.175 3.825 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.096 0.904 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.796 3.204 10 H -0.194 1.194 11 H -0.217 1.217 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.328 3.672 15 O -0.447 6.447 16 C -0.146 4.146 17 C -0.057 4.057 18 C -0.173 4.173 19 C -0.034 4.034 20 N -0.049 5.049 21 C -0.207 4.207 22 C -0.157 4.157 23 N -0.250 5.250 24 C -0.025 4.025 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.239 0.761 32 H 0.187 0.813 33 H 0.225 0.775 34 H 0.236 0.764 35 H 0.252 0.748 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.083 7.673 20.410 22.638 hybrid contribution 0.783 0.018 -0.087 0.788 sum -5.300 7.691 20.324 22.367 Atomic orbital electron populations 1.21666 0.97205 0.99111 1.00097 1.21696 0.93519 0.99081 1.00578 1.18395 0.94022 0.88909 0.81204 0.98420 1.21528 0.90894 1.43824 1.02352 0.90423 1.25829 1.03415 0.94755 0.94465 1.70161 1.37959 1.44725 1.02843 0.85377 0.78875 0.79153 0.77034 1.19403 1.21703 1.18475 1.46061 1.14757 1.56143 1.17802 1.18190 0.82424 0.79135 0.87460 1.90816 1.52373 1.60164 1.41318 1.20278 0.91936 1.05849 0.96511 1.22164 0.98908 0.93799 0.90780 1.21233 0.96496 0.99982 0.99622 1.22687 0.89289 0.99170 0.92274 1.43242 1.13294 1.36533 1.11852 1.23370 0.85042 1.10162 1.02079 1.23235 0.99919 0.99732 0.92860 1.70734 1.01322 1.21353 1.31604 1.21669 0.95770 1.01152 0.83955 0.95958 0.93287 0.94203 0.92845 0.92807 0.92679 0.76071 0.81328 0.77546 0.76442 0.74775 0.78461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.51 71.98 0.61 -5.41 16 2 C -0.11 -5.55 5.50 30.59 0.17 -5.38 16 3 C 0.28 14.80 2.11 44.25 0.09 14.90 16 4 H 0.00 -0.14 7.52 -2.39 -0.02 -0.16 16 5 C -0.55 -29.17 8.66 25.60 0.22 -28.95 16 6 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 7 C 0.02 0.85 5.16 84.66 0.44 1.29 16 8 N -0.92 -54.48 12.16 21.45 0.26 -54.22 16 9 Si 0.97 42.09 29.55 68.60 2.03 44.11 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 13 N -0.70 -30.23 4.97 -449.56 -2.24 -32.47 16 14 C 0.54 24.57 6.33 86.61 0.55 25.12 16 15 O -0.57 -31.63 13.33 -4.12 -0.05 -31.68 16 16 C -0.14 -4.90 6.06 -18.57 -0.11 -5.01 16 17 C -0.03 -0.71 9.63 22.80 0.22 -0.49 16 18 C -0.15 -1.88 9.91 21.91 0.22 -1.66 16 19 C 0.09 1.12 10.88 83.30 0.91 2.03 16 20 N -0.38 -8.79 2.94 -347.19 -1.02 -9.81 16 21 C -0.08 -1.53 11.76 83.13 0.98 -0.55 16 22 C -0.01 -0.26 11.83 83.65 0.99 0.73 16 23 N -0.53 -21.59 10.70 -189.71 -2.03 -23.61 16 24 C 0.22 7.95 7.67 135.76 1.04 8.99 16 25 H 0.02 1.17 7.84 -2.39 -0.02 1.16 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.04 1.93 5.65 -2.39 -0.01 1.92 16 28 H 0.05 2.97 6.80 -2.39 -0.02 2.96 16 29 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.40 13.95 6.62 -92.71 -0.61 13.33 16 32 H 0.17 2.84 6.48 -2.91 -0.02 2.82 16 33 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16 34 H 0.22 0.32 8.06 -2.91 -0.02 0.29 16 35 H 0.24 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.20 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -87.22 304.45 3.76 -83.46 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.50 Total: 18.62 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.32 Total: 5.60 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -5.03 Total: -120.11 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.05 Total: -31.68 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -87.22 3.76 -83.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151482812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.612 kcal (2) G-P(sol) polarization free energy of solvation -87.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds