Wall clock time and date at job start Mon Mar 30 2020 00:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00105 * 3 2 1 5 5 H 1.48496 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21546 * 120.00279 * 0.02562 * 13 12 11 15 15 C 1.47886 * 119.99648 * 180.02562 * 13 12 11 16 16 N 1.32712 * 119.91161 * 359.72371 * 15 13 12 17 17 C 1.31776 * 122.47972 * 179.81582 * 16 15 13 18 18 C 1.38180 * 121.34010 * 0.43608 * 17 16 15 19 19 C 1.39556 * 118.81665 * 359.80341 * 18 17 16 20 20 C 1.46076 * 135.23820 * 179.97438 * 19 18 17 21 21 C 1.34408 * 106.88680 * 180.02562 * 20 19 18 22 22 N 1.36807 * 109.95782 * 359.97438 * 21 20 19 23 23 H 0.97006 * 124.99466 * 180.02562 * 22 21 20 24 24 C 1.37007 * 110.00093 * 0.02562 * 22 21 20 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 33 33 H 1.07993 * 119.32897 * 180.23686 * 17 16 15 34 34 H 1.08002 * 120.59060 * 179.78651 * 18 17 16 35 35 H 1.07999 * 126.55482 * 0.03122 * 20 19 18 36 36 H 1.07998 * 125.02022 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7875 -7.5934 0.0010 15 6 2.9435 -8.4955 0.0031 16 7 4.2479 -8.2510 -0.0015 17 6 5.1482 -9.2132 0.0029 18 6 4.7775 -10.5443 0.0036 19 6 3.4191 -10.8643 0.0038 20 6 2.6453 -12.1033 0.0040 21 6 1.3477 -11.7532 0.0036 22 7 1.2318 -10.3900 0.0036 23 1 0.3928 -9.9030 0.0037 24 6 2.4749 -9.8140 0.0036 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8886 31 1 0.8535 -5.0445 0.8914 32 1 3.3856 -5.9235 0.0021 33 1 6.1971 -8.9562 0.0027 34 1 5.5256 -11.3233 0.0038 35 1 3.0405 -13.1084 0.0046 36 1 0.5189 -12.4457 0.0040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152253381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:24 Heat of formation + Delta-G solvation = 14.697136 kcal Electronic energy + Delta-G solvation = -19442.844618 eV Core-core repulsion = 16312.779300 eV Total energy + Delta-G solvation = -3130.065318 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.87786 -39.38871 -38.10935 -35.44148 -33.33903 -32.70200 -31.18657 -30.32117 -29.69186 -26.90685 -24.74799 -22.93820 -22.84123 -21.36206 -20.70299 -20.09928 -18.56522 -17.62608 -16.54422 -16.38920 -15.64814 -15.56360 -15.14781 -14.84895 -14.76590 -14.42930 -13.79447 -13.74535 -13.58707 -12.84946 -12.66191 -12.36760 -12.24642 -11.83159 -11.72812 -10.86956 -10.72926 -10.62223 -10.37630 -10.34229 -9.84155 -9.84086 -9.37976 -9.11476 -8.98910 -8.81123 -8.35302 -8.18138 -6.00261 -4.03108 0.31639 1.24924 2.22200 2.83956 2.87193 3.27458 3.33922 3.38291 3.40921 3.80790 4.12812 4.30052 4.45858 4.49433 4.71148 4.89204 5.04112 5.23304 5.35548 5.37050 5.46825 5.71582 5.78269 5.83107 6.16659 6.19734 6.23462 6.46119 6.61778 6.63144 6.83970 7.01531 7.18764 7.52846 7.65001 7.77704 7.82132 7.98593 8.29029 8.40437 9.03360 9.60933 11.11080 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041549 B = 0.002934 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.744585 B = 9541.925718 C =10189.920694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.114 3.886 12 N -0.699 5.699 13 C 0.567 3.433 14 O -0.555 6.555 15 C 0.086 3.914 16 N -0.437 5.437 17 C 0.053 3.947 18 C -0.100 4.100 19 C -0.087 4.087 20 C -0.210 4.210 21 C 0.069 3.931 22 N -0.568 5.568 23 H 0.431 0.569 24 C 0.096 3.904 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.411 0.589 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 -25.712 0.018 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.008 4.008 12 N -0.348 5.348 13 C 0.352 3.648 14 O -0.434 6.434 15 C -0.061 4.061 16 N -0.149 5.149 17 C -0.101 4.101 18 C -0.120 4.120 19 C -0.099 4.099 20 C -0.235 4.235 21 C -0.061 4.061 22 N -0.171 5.171 23 H 0.272 0.728 24 C -0.018 4.018 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.247 0.753 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.414 -24.777 0.011 25.594 hybrid contribution 0.296 0.307 0.002 0.427 sum 6.710 -24.470 0.013 25.373 Atomic orbital electron populations 1.69958 1.06072 1.26780 1.50588 1.25029 0.94859 0.99301 0.95274 0.86633 0.79554 0.83041 0.78624 1.20220 1.21296 1.20224 1.21182 0.93023 0.90933 1.50937 0.92621 1.19025 0.93824 0.90837 0.97615 1.21900 0.99795 0.93094 1.01166 1.21746 0.91875 0.85089 1.02115 1.46051 1.11858 1.05148 1.71767 1.17828 0.86966 0.82898 0.77078 1.90686 1.15690 1.84818 1.52173 1.20305 0.90927 0.89569 1.05333 1.67443 1.00039 1.37332 1.10052 1.22400 0.98934 0.87989 1.00787 1.21699 0.94230 0.97845 0.98238 1.19478 0.92999 0.93166 1.04214 1.21627 0.91499 0.96944 1.13451 1.22158 0.98857 0.83605 1.01446 1.41978 1.07698 1.05938 1.61518 0.72798 1.18905 0.86183 0.93802 1.02909 0.92892 0.96289 0.96277 0.92544 0.92536 0.91509 0.91516 0.75346 0.81945 0.84328 0.82861 0.80476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.46 5.27 -26.73 -0.14 -2.60 16 11 C 0.11 2.08 5.67 -4.04 -0.02 2.06 16 12 N -0.70 -11.30 5.55 -61.23 -0.34 -11.64 16 13 C 0.57 9.35 7.80 -12.31 -0.10 9.25 16 14 O -0.55 -10.09 15.22 5.33 0.08 -10.01 16 15 C 0.09 1.25 6.77 -82.90 -0.56 0.68 16 16 N -0.44 -5.73 9.51 -9.77 -0.09 -5.82 16 17 C 0.05 0.53 11.16 -17.60 -0.20 0.34 16 18 C -0.10 -0.91 10.17 -39.11 -0.40 -1.31 16 19 C -0.09 -0.95 6.44 -105.13 -0.68 -1.62 16 20 C -0.21 -1.74 11.08 -37.79 -0.42 -2.16 16 21 C 0.07 0.53 11.82 -16.68 -0.20 0.33 16 22 N -0.57 -6.13 5.87 -10.44 -0.06 -6.20 16 23 H 0.43 4.63 7.61 -40.82 -0.31 4.31 16 24 C 0.10 1.24 6.88 -83.78 -0.58 0.67 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.41 6.03 7.81 -40.82 -0.32 5.71 16 33 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -33.46 315.44 -8.18 -41.63 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.40 Total: 4.32 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -3.83 Total: -7.41 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.24 Total: -49.97 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.46 -8.18 -41.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152253381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.329 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds