Wall clock time and date at job start Mon Mar 30 2020 00:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00105 * 3 2 1 5 5 H 1.48496 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21546 * 120.00279 * 0.02562 * 13 12 11 15 15 C 1.47886 * 119.99648 * 180.02562 * 13 12 11 16 16 N 1.32712 * 119.91161 * 359.72371 * 15 13 12 17 17 C 1.31776 * 122.47972 * 179.81582 * 16 15 13 18 18 C 1.38180 * 121.34010 * 0.43608 * 17 16 15 19 19 C 1.39556 * 118.81665 * 359.80341 * 18 17 16 20 20 C 1.46076 * 135.23820 * 179.97438 * 19 18 17 21 21 C 1.34408 * 106.88680 * 180.02562 * 20 19 18 22 22 N 1.36807 * 109.95782 * 359.97438 * 21 20 19 23 23 H 0.97006 * 124.99466 * 180.02562 * 22 21 20 24 24 C 1.37007 * 110.00093 * 0.02562 * 22 21 20 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 33 33 H 1.07993 * 119.32897 * 180.23686 * 17 16 15 34 34 H 1.08002 * 120.59060 * 179.78651 * 18 17 16 35 35 H 1.07999 * 126.55482 * 0.03122 * 20 19 18 36 36 H 1.07998 * 125.02022 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7875 -7.5934 0.0010 15 6 2.9435 -8.4955 0.0031 16 7 4.2479 -8.2510 -0.0015 17 6 5.1482 -9.2132 0.0029 18 6 4.7775 -10.5443 0.0036 19 6 3.4191 -10.8643 0.0038 20 6 2.6453 -12.1033 0.0040 21 6 1.3477 -11.7532 0.0036 22 7 1.2318 -10.3900 0.0036 23 1 0.3928 -9.9030 0.0037 24 6 2.4749 -9.8140 0.0036 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8886 31 1 0.8535 -5.0445 0.8914 32 1 3.3856 -5.9235 0.0021 33 1 6.1971 -8.9562 0.0027 34 1 5.5256 -11.3233 0.0038 35 1 3.0405 -13.1084 0.0046 36 1 0.5189 -12.4457 0.0040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152253381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:24 Heat of formation + Delta-G solvation = -8.557964 kcal Electronic energy + Delta-G solvation = -19443.853034 eV Core-core repulsion = 16312.779300 eV Total energy + Delta-G solvation = -3131.073735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.66677 -40.59515 -38.95905 -37.03759 -35.22796 -33.66202 -32.88479 -31.16124 -30.46858 -28.67791 -26.02546 -24.52089 -23.64019 -22.34135 -22.25263 -21.26824 -19.39357 -18.76220 -18.44225 -17.40937 -16.90916 -16.85461 -16.43638 -16.01840 -15.96619 -15.56553 -15.15654 -15.01458 -14.26922 -14.16421 -13.78475 -13.77995 -13.48242 -13.30139 -13.15395 -12.72936 -12.58224 -12.43531 -11.71633 -11.70644 -11.36259 -11.21303 -11.15455 -10.67634 -10.55562 -10.22262 -9.74862 -8.92266 -8.20287 -6.31812 -0.54141 0.45088 1.41128 1.42019 1.44495 1.52304 1.91603 2.00659 2.16304 2.42091 2.90085 3.13294 3.15757 3.61255 3.77839 3.87191 4.08277 4.16510 4.17949 4.42386 4.51278 4.55484 4.68651 4.86884 4.90001 4.91755 5.09696 5.13605 5.33291 5.49965 5.53000 5.58469 5.68479 5.82524 5.89848 6.21152 6.35815 6.45430 6.84343 6.85613 7.06337 7.37578 8.91716 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041549 B = 0.002934 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.744585 B = 9541.925718 C =10189.920694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.103 4.103 11 C 0.129 3.871 12 N -0.696 5.696 13 C 0.564 3.436 14 O -0.581 6.581 15 C 0.049 3.951 16 N -0.453 5.453 17 C 0.042 3.958 18 C -0.081 4.081 19 C -0.103 4.103 20 C -0.210 4.210 21 C 0.071 3.929 22 N -0.580 5.580 23 H 0.427 0.573 24 C 0.072 3.928 25 H 0.264 0.736 26 H -0.006 1.006 27 H -0.006 1.006 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.418 0.582 33 H 0.195 0.805 34 H 0.179 0.821 35 H 0.186 0.814 36 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.632 -27.622 0.019 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.141 4.141 11 C 0.005 3.995 12 N -0.346 5.346 13 C 0.351 3.649 14 O -0.462 6.462 15 C -0.096 4.096 16 N -0.165 5.165 17 C -0.113 4.113 18 C -0.101 4.101 19 C -0.115 4.115 20 C -0.234 4.234 21 C -0.057 4.057 22 N -0.183 5.183 23 H 0.267 0.733 24 C -0.043 4.043 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.256 0.744 33 H 0.212 0.788 34 H 0.197 0.803 35 H 0.203 0.797 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.807 -26.715 0.012 28.129 hybrid contribution -0.418 0.742 0.001 0.851 sum 8.389 -25.973 0.013 27.294 Atomic orbital electron populations 1.70104 1.07918 1.27901 1.51570 1.26023 0.95773 1.03540 0.94685 0.85459 0.78206 0.77858 0.79277 1.19034 1.20999 1.19044 1.21654 0.93744 0.92064 1.50713 0.91659 1.18923 0.94319 0.92729 0.95193 1.21609 0.98543 0.91853 1.02065 1.21357 0.91799 0.85177 1.01150 1.45855 1.11763 1.04708 1.72242 1.18277 0.87245 0.83319 0.76066 1.90650 1.16975 1.85276 1.53327 1.19909 0.91202 0.89229 1.09287 1.67358 0.99875 1.38896 1.10394 1.23028 0.99791 0.88182 1.00279 1.22177 0.94423 0.98443 0.95034 1.20002 0.93605 0.93669 1.04243 1.22074 0.91207 0.97401 1.12731 1.22920 1.00341 0.82646 0.99790 1.42182 1.07027 1.07172 1.61873 0.73342 1.19151 0.87695 0.93938 1.03510 0.92752 0.98774 0.98761 0.91541 0.91537 0.92575 0.92578 0.74429 0.78808 0.80338 0.79674 0.76560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 3 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -31.09 9.11 25.60 0.23 -30.85 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.10 -4.23 5.27 30.59 0.16 -4.07 16 11 C 0.13 4.89 5.67 86.38 0.49 5.38 16 12 N -0.70 -23.18 5.55 -465.92 -2.58 -25.77 16 13 C 0.56 19.37 7.80 86.80 0.68 20.04 16 14 O -0.58 -22.28 15.22 -3.86 -0.06 -22.33 16 15 C 0.05 1.44 6.77 41.98 0.28 1.73 16 16 N -0.45 -11.65 9.51 -184.83 -1.76 -13.41 16 17 C 0.04 0.76 11.16 84.69 0.94 1.71 16 18 C -0.08 -1.22 10.17 22.57 0.23 -0.99 16 19 C -0.10 -2.02 6.44 -20.19 -0.13 -2.15 16 20 C -0.21 -2.81 11.08 23.43 0.26 -2.55 16 21 C 0.07 0.92 11.82 83.04 0.98 1.91 16 22 N -0.58 -12.32 5.87 -186.93 -1.10 -13.42 16 23 H 0.43 9.48 7.61 -92.70 -0.71 8.77 16 24 C 0.07 1.84 6.88 39.48 0.27 2.11 16 25 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 28 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.42 12.45 7.81 -92.71 -0.72 11.72 16 33 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.19 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.22 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -74.80 315.44 1.52 -73.29 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -0.31 Total: 18.49 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.01 Total: -5.89 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -5.15 Total: -110.08 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.06 Total: -22.33 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -74.80 1.52 -73.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152253381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.729 kcal (2) G-P(sol) polarization free energy of solvation -74.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds