Wall clock time and date at job start Mon Mar 30 2020 01:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21586 * 119.99932 * 359.97438 * 14 13 3 16 16 C 1.47537 * 119.99837 * 179.97438 * 14 13 3 17 17 C 1.40974 * 126.35998 * 180.02562 * 16 14 13 18 18 C 1.38078 * 106.80864 * 179.97438 * 17 16 14 19 19 C 1.41076 * 132.45997 * 179.97438 * 18 17 16 20 20 C 1.36010 * 119.09165 * 180.02562 * 19 18 17 21 21 C 1.40284 * 120.10681 * 359.91665 * 20 19 18 22 22 N 1.30390 * 121.22663 * 0.06473 * 21 20 19 23 23 N 1.38175 * 108.18613 * 359.97438 * 18 17 16 24 24 C 1.34653 * 108.90060 * 359.76785 * 23 18 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.08000 * 126.59498 * 359.92685 * 17 16 14 33 33 H 1.08002 * 120.45485 * 359.97438 * 19 18 17 34 34 H 1.07996 * 119.94765 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.38440 * 180.02562 * 21 20 19 36 36 H 1.08001 * 125.58620 * 180.25542 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6326 0.4318 16 6 0.0447 3.3234 2.6278 17 6 -1.1872 3.9550 2.8942 18 6 -1.1204 4.4307 4.1887 19 6 -2.0394 5.1380 4.9920 20 6 -1.6836 5.4797 6.2595 21 6 -0.4188 5.1285 6.7543 22 7 0.4369 4.4745 6.0192 23 7 0.1178 4.1010 4.7059 24 6 0.8169 3.4307 3.7705 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 -2.0222 4.0494 2.2158 33 1 -3.0119 5.4051 4.6056 34 1 -2.3762 6.0216 6.8864 35 1 -0.1485 5.4054 7.7625 36 1 1.8174 3.0426 3.8916 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154591673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:41 Heat of formation + Delta-G solvation = 42.322463 kcal Electronic energy + Delta-G solvation = -20233.763698 eV Core-core repulsion = 17104.896304 eV Total energy + Delta-G solvation = -3128.867394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.88586 -40.46274 -38.10340 -36.83570 -34.33627 -34.22891 -32.94709 -31.33389 -29.56208 -28.82530 -25.95649 -24.81045 -23.79077 -22.99508 -21.57730 -20.87134 -19.34691 -18.77084 -17.93994 -17.17181 -16.72606 -16.70564 -16.49933 -16.06550 -15.89765 -15.20578 -14.76697 -14.59685 -14.28344 -13.87910 -13.56720 -13.42098 -13.22875 -13.12801 -12.96147 -12.83674 -12.68599 -12.13791 -12.03864 -11.76452 -11.57408 -11.45147 -11.02621 -10.81220 -10.51463 -9.94000 -9.54966 -8.78645 -8.14380 -6.31485 -0.42720 0.32710 1.00165 1.07639 1.45075 1.46083 1.58073 2.35008 2.37781 2.62999 2.69658 3.15124 3.27895 3.68826 3.86503 3.88667 4.12427 4.30427 4.49146 4.52115 4.59564 4.59712 4.77576 4.85763 5.06591 5.09426 5.11531 5.24317 5.32111 5.46588 5.53678 5.58234 5.64411 5.77794 5.82180 5.96134 6.18631 6.68874 6.76177 7.02826 7.35064 7.59618 8.91446 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.004143 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.650970 B = 6756.680579 C = 7436.061995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.700 5.700 14 C 0.574 3.426 15 O -0.586 6.586 16 C -0.204 4.204 17 C -0.119 4.119 18 C -0.045 4.045 19 C -0.014 4.014 20 C -0.199 4.199 21 C 0.150 3.850 22 N -0.318 5.318 23 N -0.265 5.265 24 C 0.058 3.942 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.193 0.807 35 H 0.240 0.760 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 9.890 20.494 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.348 5.348 14 C 0.362 3.638 15 O -0.469 6.469 16 C -0.213 4.213 17 C -0.145 4.145 18 C -0.151 4.151 19 C -0.040 4.040 20 C -0.220 4.220 21 C -0.043 4.043 22 N -0.126 5.126 23 N -0.024 5.024 24 C -0.082 4.082 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.235 0.765 32 H 0.176 0.824 33 H 0.199 0.801 34 H 0.211 0.789 35 H 0.256 0.744 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -8.220 9.432 19.981 23.575 hybrid contribution 0.454 0.009 -0.626 0.774 sum -7.766 9.441 19.355 22.892 Atomic orbital electron populations 1.21683 0.97063 0.99129 1.00263 1.21784 0.93714 0.99096 1.01343 1.18412 0.93750 0.89205 0.81141 0.98179 1.21605 0.91333 1.38899 1.06762 0.91092 1.25766 1.03319 0.94354 0.94978 1.70059 1.36970 1.38401 1.09842 0.85316 0.79114 0.77839 0.78166 1.18556 1.20353 1.20992 1.46125 1.15074 1.55927 1.17683 1.17730 0.81847 0.77799 0.86386 1.90703 1.52744 1.61970 1.41454 1.19730 0.97790 1.09753 0.94010 1.21303 0.97992 1.00931 0.94292 1.19551 0.89459 1.10195 0.95927 1.21380 0.98826 0.90860 0.92954 1.21883 0.98256 1.05144 0.96765 1.24963 0.90699 0.88092 1.00529 1.75749 1.28371 1.19536 0.88918 1.45348 1.11888 1.36596 1.08580 1.22114 0.99447 1.00845 0.85813 0.95402 0.94018 0.93507 0.94082 0.90776 0.92585 0.76466 0.82368 0.80134 0.78947 0.74423 0.78879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.51 71.98 0.61 -5.26 16 2 C -0.12 -6.16 5.45 30.59 0.17 -5.99 16 3 C 0.28 14.82 2.24 44.24 0.10 14.92 16 4 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 5 C -0.55 -29.72 8.73 25.60 0.22 -29.50 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -53.07 11.30 21.45 0.24 -52.83 16 9 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 N -0.70 -31.06 5.01 -449.28 -2.25 -33.31 16 14 C 0.57 25.33 6.38 86.70 0.55 25.89 16 15 O -0.59 -30.14 14.05 -3.99 -0.06 -30.19 16 16 C -0.20 -7.27 6.12 -20.14 -0.12 -7.39 16 17 C -0.12 -3.72 10.78 22.90 0.25 -3.47 16 18 C -0.04 -1.15 6.78 38.80 0.26 -0.88 16 19 C -0.01 -0.22 10.13 22.45 0.23 0.01 16 20 C -0.20 -1.84 10.03 22.25 0.22 -1.62 16 21 C 0.15 1.75 11.28 85.40 0.96 2.71 16 22 N -0.32 -7.01 11.89 -56.99 -0.68 -7.69 16 23 N -0.27 -7.31 3.93 -186.28 -0.73 -8.04 16 24 C 0.06 1.77 11.37 84.28 0.96 2.73 16 25 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 26 H 0.04 1.94 5.64 -2.39 -0.01 1.92 16 27 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 4.18 5.95 -2.39 -0.01 4.17 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.40 15.22 7.44 -92.71 -0.69 14.53 16 32 H 0.16 4.68 8.06 -2.91 -0.02 4.66 16 33 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.19 0.02 8.06 -2.91 -0.02 0.00 16 35 H 0.24 0.27 8.06 -2.91 -0.02 0.24 16 36 H 0.19 4.99 7.42 -2.91 -0.02 4.97 16 Total: -1.00 -76.26 306.57 3.83 -72.43 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.42 Total: 21.36 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 4.86 Total: -6.54 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -3.42 Total: -101.87 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.06 Total: -30.19 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -76.26 3.83 -72.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154591673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.753 kcal (2) G-P(sol) polarization free energy of solvation -76.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds