Wall clock time and date at job start Mon Mar 30 2020 01:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38684 * 119.27041 * 2 1 4 4 C 1.38017 * 119.62573 * 179.76735 * 3 2 1 5 5 C 1.41003 * 118.27532 * 0.49427 * 4 3 2 6 6 C 1.41023 * 120.70207 * 179.72767 * 5 4 3 7 7 H 1.08001 * 119.99710 * 155.10201 * 6 5 4 8 8 C 1.39951 * 119.99941 * 335.10606 * 6 5 4 9 9 N 1.30863 * 120.00021 * 343.24658 * 8 6 5 10 10 Si 1.86802 * 119.99913 * 163.25052 * 8 6 5 11 11 H 1.48504 * 109.47000 * 94.67545 * 10 8 6 12 12 H 1.48493 * 109.47260 * 214.67602 * 10 8 6 13 13 H 1.48496 * 109.47204 * 334.67984 * 10 8 6 14 14 C 1.41701 * 118.59393 * 359.75179 * 5 4 3 15 15 N 1.38087 * 119.90854 * 180.02562 * 14 5 4 16 16 C 1.46500 * 120.00134 * 179.97438 * 15 14 5 17 17 C 1.53001 * 109.47098 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47196 * 180.02562 * 17 16 15 19 19 C 1.41385 * 128.00823 * 269.68024 * 18 17 16 20 20 N 1.30176 * 106.39560 * 179.89345 * 19 18 17 21 21 O 1.20925 * 111.60156 * 0.39211 * 20 19 18 22 22 C 1.34040 * 111.56720 * 359.74452 * 21 20 19 23 23 N 1.31963 * 119.28022 * 180.27412 * 2 1 3 24 24 H 1.08996 * 109.47446 * 269.72416 * 1 2 3 25 25 H 1.09000 * 109.47498 * 29.72957 * 1 2 3 26 26 H 1.09003 * 109.47003 * 149.72605 * 1 2 3 27 27 H 1.07999 * 120.18789 * 0.02562 * 3 2 1 28 28 H 1.07995 * 120.86190 * 180.22243 * 4 3 2 29 29 H 0.97000 * 120.00032 * 179.97438 * 9 8 6 30 30 H 0.96996 * 119.99774 * 359.97438 * 15 14 5 31 31 H 1.08999 * 109.47362 * 299.99722 * 16 15 14 32 32 H 1.09002 * 109.47344 * 59.99986 * 16 15 14 33 33 H 1.08997 * 109.47380 * 299.99933 * 17 16 15 34 34 H 1.09000 * 109.47010 * 60.00640 * 17 16 15 35 35 H 1.07997 * 126.80119 * 0.03594 * 19 18 17 36 36 H 1.07999 * 126.76949 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1850 1.2098 0.0000 4 6 3.5652 1.2183 0.0049 5 6 4.2408 -0.0193 -0.0010 6 6 5.6501 -0.0702 -0.0022 7 1 6.1594 -0.9393 0.3875 8 6 6.3888 1.0054 -0.5082 9 7 5.8074 1.8990 -1.2671 10 14 8.2047 1.1656 -0.1003 11 1 9.0117 0.5516 -1.1852 12 1 8.5585 2.6020 0.0276 13 1 8.4874 0.4702 1.1810 14 6 3.4738 -1.2107 -0.0062 15 7 4.1075 -2.4376 -0.0115 16 6 3.3164 -3.6706 -0.0163 17 6 4.2552 -4.8788 -0.0222 18 6 3.4415 -6.1472 -0.0278 19 6 2.9770 -6.8885 1.0829 20 7 2.3192 -7.9022 0.5990 21 8 2.3185 -7.8962 -0.6102 22 6 2.9908 -6.8442 -1.0981 23 7 2.1524 -1.1510 -0.0055 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3634 0.8924 -0.5096 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6362 2.1399 0.0004 28 1 4.1134 2.1488 0.0086 29 1 6.3192 2.6447 -1.6175 30 1 5.0764 -2.4829 -0.0120 31 1 2.6881 -3.7027 0.8738 32 1 2.6874 -3.6953 -0.9062 33 1 4.8832 -4.8466 -0.9125 34 1 4.8844 -4.8543 0.8675 35 1 3.1346 -6.6580 2.1262 36 1 3.1433 -6.6008 -2.1392 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161702048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:51 Heat of formation + Delta-G solvation = 66.986607 kcal Electronic energy + Delta-G solvation = -19891.511511 eV Core-core repulsion = 16763.713634 eV Total energy + Delta-G solvation = -3127.797876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.87612 -40.40963 -37.42157 -35.97698 -35.29804 -33.29341 -32.58436 -31.75692 -29.90848 -29.06543 -25.89212 -24.71098 -23.74833 -22.64215 -22.40725 -21.73973 -19.10488 -18.81005 -18.47327 -17.68974 -17.28438 -16.53161 -16.06284 -15.73232 -15.55082 -15.11726 -14.84681 -14.34732 -14.07376 -13.95337 -13.49568 -13.31749 -13.19521 -13.10776 -12.99306 -12.88882 -12.55920 -12.50375 -12.14788 -11.92903 -11.61184 -11.23014 -11.05533 -10.55330 -10.32326 -9.92777 -9.75134 -8.62426 -8.27258 -6.09612 0.60550 0.93164 1.24439 1.29929 1.43394 1.52312 1.58100 2.24396 2.39347 2.80127 2.87426 3.43187 3.78892 3.81610 4.03339 4.11048 4.27256 4.38212 4.52929 4.54184 4.67045 4.74769 4.82730 4.91907 4.98564 5.03821 5.10502 5.18790 5.20838 5.27169 5.28698 5.44928 5.82133 5.92942 6.15948 6.43458 6.78905 6.89145 6.94966 7.17842 7.31327 7.97407 8.41449 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.004742 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.305906 B = 5902.791386 C = 7388.651535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.017 3.983 3 C -0.199 4.199 4 C -0.149 4.149 5 C -0.003 4.003 6 C -0.479 4.479 7 H 0.085 0.915 8 C 0.034 3.966 9 N -0.833 5.833 10 Si 0.980 3.020 11 H -0.263 1.263 12 H -0.275 1.275 13 H -0.257 1.257 14 C 0.299 3.701 15 N -0.725 5.725 16 C 0.158 3.842 17 C -0.041 4.041 18 C -0.205 4.205 19 C -0.009 4.009 20 N -0.399 5.399 21 O 0.085 5.915 22 C -0.041 4.041 23 N -0.542 5.542 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.285 0.715 30 H 0.407 0.593 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.204 0.796 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 -10.413 0.174 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 C -0.221 4.221 4 C -0.175 4.175 5 C -0.010 4.010 6 C -0.510 4.510 7 H 0.103 0.897 8 C -0.179 4.179 9 N -0.460 5.460 10 Si 0.801 3.199 11 H -0.188 1.188 12 H -0.200 1.200 13 H -0.181 1.181 14 C 0.060 3.940 15 N -0.364 5.364 16 C 0.033 3.967 17 C -0.079 4.079 18 C -0.210 4.210 19 C -0.187 4.187 20 N -0.105 5.105 21 O 0.023 5.977 22 C -0.122 4.122 23 N -0.261 5.261 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.095 0.905 30 H 0.244 0.756 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.221 0.779 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.689 -12.116 0.568 12.246 hybrid contribution 1.943 2.072 -0.021 2.841 sum 0.254 -10.044 0.546 10.062 Atomic orbital electron populations 1.20333 0.88449 1.02069 1.01755 1.20743 0.96651 0.87544 1.06734 1.21470 0.94852 0.98021 1.07789 1.21367 0.93200 0.97862 1.05096 1.18269 0.94885 0.90830 0.96993 1.19406 0.90790 1.03675 1.37125 0.89725 1.26659 1.05153 0.94173 0.91956 1.69889 1.40366 1.11687 1.24042 0.85222 0.76535 0.78337 0.79799 1.18823 1.19980 1.18058 1.18705 0.88198 0.86665 1.00438 1.43755 1.07873 1.01113 1.83694 1.20867 0.93321 0.82705 0.99810 1.19946 0.95892 0.86980 1.05085 1.21312 1.06488 1.00792 0.92397 1.25394 0.97990 0.92091 1.03255 1.73861 1.21203 1.23283 0.92112 1.84772 1.56485 1.40949 1.15505 1.26540 0.95455 0.87543 1.02703 1.66513 1.08325 1.30312 1.20926 0.91604 0.90748 0.92305 0.86734 0.87368 0.90487 0.75562 0.94634 0.94253 0.88462 0.89084 0.77930 0.73261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.38 10.15 71.23 0.72 -1.65 16 2 C 0.02 0.79 6.79 42.64 0.29 1.08 16 3 C -0.20 -9.46 9.69 22.32 0.22 -9.25 16 4 C -0.15 -7.87 8.79 22.90 0.20 -7.67 16 5 C 0.00 -0.14 5.60 -21.06 -0.12 -0.26 16 6 C -0.48 -23.98 8.52 23.37 0.20 -23.78 16 7 H 0.08 3.89 6.68 -2.91 -0.02 3.87 16 8 C 0.03 1.65 5.18 85.25 0.44 2.10 16 9 N -0.83 -42.60 10.96 21.83 0.24 -42.36 16 10 Si 0.98 36.40 29.59 68.60 2.03 38.43 16 11 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 12 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 13 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 14 C 0.30 14.47 7.52 134.05 1.01 15.48 16 15 N -0.72 -28.24 5.61 -343.65 -1.93 -30.16 16 16 C 0.16 4.95 5.66 86.38 0.49 5.44 16 17 C -0.04 -0.89 5.91 29.85 0.18 -0.71 16 18 C -0.21 -4.32 5.58 -19.73 -0.11 -4.43 16 19 C -0.01 -0.20 12.16 85.71 1.04 0.84 16 20 N -0.40 -10.20 12.07 -59.26 -0.72 -10.92 16 21 O 0.09 1.93 11.20 71.63 0.80 2.73 16 22 C -0.04 -0.74 12.26 67.17 0.82 0.09 16 23 N -0.54 -25.95 9.44 -179.58 -1.70 -27.64 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 28 H 0.11 5.95 6.26 -2.91 -0.02 5.93 16 29 H 0.28 13.28 8.30 -92.71 -0.77 12.51 16 30 H 0.41 14.80 6.67 -92.71 -0.62 14.18 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.20 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.25 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -64.12 313.01 4.61 -59.52 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 0.49 Total: 33.13 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 5.38 Total: -22.72 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.10 Total: -111.08 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: 0.80 Total: 2.73 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Total: -64.12 4.61 -59.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161702048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.504 kcal (2) G-P(sol) polarization free energy of solvation -64.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds