Wall clock time and date at job start Mon Mar 30 2020 01:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47110 * 2 1 4 4 C 1.34333 * 126.16580 * 124.98562 * 3 2 1 5 5 O 1.34754 * 107.10901 * 179.80727 * 4 3 2 6 6 C 1.33963 * 107.75744 * 0.36300 * 5 4 3 7 7 C 1.50700 * 125.61792 * 179.89343 * 6 5 4 8 8 N 1.46493 * 109.47385 * 269.69188 * 7 6 5 9 9 C 1.38098 * 120.00114 * 180.02562 * 8 7 6 10 10 N 1.32268 * 119.90328 * 0.02562 * 9 8 7 11 11 C 1.31971 * 121.86368 * 179.72513 * 10 9 8 12 12 C 1.38692 * 121.44563 * 0.55221 * 11 10 9 13 13 C 1.38010 * 119.62499 * 359.43933 * 12 11 10 14 14 C 1.40999 * 118.28164 * 0.27782 * 13 12 11 15 15 C 1.41018 * 120.70261 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00028 * 204.88999 * 15 14 13 17 17 C 1.39949 * 120.00278 * 24.89668 * 15 14 13 18 18 N 1.30868 * 119.99726 * 14.50487 * 17 15 14 19 19 Si 1.86792 * 120.00181 * 194.50576 * 17 15 14 20 20 H 1.48506 * 109.47050 * 59.99775 * 19 17 15 21 21 H 1.48508 * 109.47237 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47246 * 299.99924 * 19 17 15 23 23 N 1.30249 * 108.76221 * 359.63099 * 6 5 4 24 24 H 1.08996 * 109.47654 * 60.00185 * 1 2 3 25 25 H 1.09002 * 109.47242 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47262 * 299.99966 * 1 2 3 27 27 H 1.09007 * 109.46909 * 239.99391 * 2 1 3 28 28 H 1.09003 * 109.46868 * 120.00155 * 2 1 3 29 29 H 1.08000 * 126.44407 * 0.05145 * 4 3 2 30 30 H 1.09005 * 109.47174 * 149.68920 * 7 6 5 31 31 H 1.09002 * 109.47194 * 29.69215 * 7 6 5 32 32 H 0.96997 * 120.00084 * 359.97438 * 8 7 6 33 33 H 1.07998 * 119.27850 * 180.28728 * 11 10 9 34 34 H 1.07991 * 120.18464 * 179.70907 * 12 11 10 35 35 H 1.07996 * 120.85438 * 180.29967 * 13 12 11 36 36 H 0.97004 * 119.99967 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8828 1.9609 0.8885 5 8 3.0729 3.2446 0.5256 6 6 2.3345 3.4735 -0.5685 7 6 2.2467 4.7825 -1.3101 8 7 1.1511 5.5835 -0.7588 9 6 0.8767 6.8315 -1.2826 10 7 1.6040 7.3014 -2.2824 11 6 1.3723 8.4861 -2.8157 12 6 0.3573 9.3057 -2.3448 13 6 -0.4394 8.8750 -1.3034 14 6 -0.1836 7.6047 -0.7476 15 6 -0.9665 7.1139 0.3176 16 1 -0.5588 6.3753 0.9918 17 6 -2.2719 7.5839 0.5011 18 7 -2.8678 8.2502 -0.4547 19 14 -3.1637 7.2601 2.1101 20 1 -2.4021 7.8702 3.2296 21 1 -4.5219 7.8578 2.0524 22 1 -3.2758 5.7954 2.3280 23 7 1.7094 2.3767 -0.8890 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.3329 1.4594 1.7325 30 1 2.0600 4.5898 -2.3666 31 1 3.1851 5.3260 -1.2002 32 1 0.6179 5.2371 -0.0263 33 1 1.9893 8.8268 -3.6341 34 1 0.1886 10.2734 -2.7934 35 1 -1.2384 9.4949 -0.9244 36 1 -3.7725 8.5762 -0.3275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162134068.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:50 Heat of formation + Delta-G solvation = 48.040531 kcal Electronic energy + Delta-G solvation = -20066.575031 eV Core-core repulsion = 16937.955592 eV Total energy + Delta-G solvation = -3128.619440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.24605 -38.50830 -35.56496 -35.06635 -33.98409 -32.75508 -30.44452 -30.32484 -28.52371 -26.06456 -25.18639 -23.92727 -21.82923 -21.11598 -20.83827 -20.48101 -17.31090 -17.23344 -16.68666 -16.36734 -15.34418 -15.08600 -14.83836 -14.38218 -13.96583 -13.86969 -13.57282 -13.32300 -12.82096 -12.64629 -12.41433 -12.05488 -11.90184 -11.54487 -11.43620 -11.35879 -11.31401 -10.93875 -10.79065 -10.56813 -10.37108 -9.81094 -9.33578 -9.08675 -8.77820 -8.13462 -7.92580 -6.82551 -6.57400 -4.27307 1.48271 2.67666 2.73373 2.85309 3.04517 3.06559 3.09074 3.22546 3.91034 4.01687 4.47458 4.67442 4.69636 4.85242 5.17733 5.30650 5.41769 5.64926 5.71907 5.76462 5.81539 5.95494 6.01342 6.06686 6.09748 6.22015 6.39669 6.43760 6.73813 6.82154 7.10142 7.14378 7.60932 7.78027 7.86239 7.97087 8.21654 8.39776 8.61250 8.76384 8.93441 9.71006 10.19038 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.005592 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.231264 B = 5005.686316 C = 6414.141284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.016 4.016 4 C -0.082 4.082 5 O -0.197 6.197 6 C 0.192 3.808 7 C 0.243 3.757 8 N -0.726 5.726 9 C 0.302 3.698 10 N -0.532 5.532 11 C 0.003 3.997 12 C -0.189 4.189 13 C -0.123 4.123 14 C 0.036 3.964 15 C -0.455 4.455 16 H 0.073 0.927 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.908 3.092 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.266 1.266 23 N -0.465 5.465 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.212 0.788 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.406 0.594 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 -10.819 3.396 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.136 4.136 4 C -0.153 4.153 5 O -0.083 6.083 6 C -0.015 4.015 7 C 0.117 3.883 8 N -0.368 5.368 9 C 0.065 3.935 10 N -0.249 5.249 11 C -0.151 4.151 12 C -0.211 4.211 13 C -0.150 4.150 14 C 0.029 3.971 15 C -0.486 4.486 16 H 0.091 0.909 17 C -0.142 4.142 18 N -0.424 5.424 19 Si 0.732 3.268 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.191 1.191 23 N -0.195 5.195 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.228 0.772 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.243 0.757 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.301 -11.226 2.363 13.089 hybrid contribution -0.935 0.246 1.934 2.162 sum 5.367 -10.979 4.297 12.954 Atomic orbital electron populations 1.21687 0.94198 1.01482 1.03060 1.19852 0.96757 0.88404 1.02626 1.21847 0.99847 0.97854 0.94062 1.24763 1.04599 0.82495 1.03400 1.84488 1.55881 1.28759 1.39153 1.26665 0.90880 0.97871 0.86091 1.19204 0.93265 0.80788 0.95037 1.43526 1.36295 1.15881 1.41141 1.18337 0.95697 0.86055 0.93426 1.66510 1.29846 1.16409 1.12165 1.21358 1.00060 0.91561 1.02124 1.21442 0.99054 0.99955 1.00653 1.21417 1.00449 0.95280 0.97839 1.17880 0.92362 0.91887 0.94976 1.19112 0.97058 1.21708 1.10716 0.90907 1.25803 0.97546 0.93524 0.97304 1.69785 1.13164 1.28398 1.31060 0.86370 0.78445 0.79614 0.82322 1.18928 1.20293 1.19121 1.70376 1.22890 0.99117 1.27106 0.91571 0.92427 0.92722 0.90388 0.90542 0.77171 0.88795 0.90279 0.75695 0.86316 0.88616 0.85366 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.88 37.16 0.37 -1.23 16 2 C -0.04 -0.40 6.50 -27.89 -0.18 -0.58 16 3 C -0.02 -0.22 6.37 -82.81 -0.53 -0.75 16 4 C -0.08 -1.02 12.06 29.35 0.35 -0.66 16 5 O -0.20 -3.06 10.78 5.37 0.06 -3.01 16 6 C 0.19 3.25 7.71 -12.95 -0.10 3.15 16 7 C 0.24 4.38 6.30 -5.20 -0.03 4.35 16 8 N -0.73 -15.47 5.60 -61.15 -0.34 -15.81 16 9 C 0.30 7.40 7.52 -155.02 -1.17 6.23 16 10 N -0.53 -12.74 9.54 -11.86 -0.11 -12.86 16 11 C 0.00 0.06 11.17 -17.32 -0.19 -0.13 16 12 C -0.19 -4.40 10.08 -39.50 -0.40 -4.80 16 13 C -0.12 -3.18 8.79 -38.62 -0.34 -3.52 16 14 C 0.04 0.94 5.60 -106.47 -0.60 0.34 16 15 C -0.45 -11.66 8.54 -37.89 -0.32 -11.99 16 16 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 17 C 0.08 1.86 5.23 -17.32 -0.09 1.77 16 18 N -0.80 -20.36 10.83 55.55 0.60 -19.75 16 19 Si 0.91 18.54 29.58 -169.99 -5.03 13.51 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 23 N -0.46 -7.89 11.28 -7.36 -0.08 -7.97 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 29 H 0.21 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.41 8.65 6.66 -40.82 -0.27 8.38 16 33 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.13 3.38 6.17 -52.49 -0.32 3.06 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -29.16 313.61 -7.71 -36.87 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -4.31 Total: 12.09 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.23 Total: -7.80 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.06 Total: -56.39 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: 0.06 Total: -3.01 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.16 -7.71 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162134068.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.912 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds