Wall clock time and date at job start Mon Mar 30 2020 01:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35869 * 117.00139 * 2 1 4 4 C 1.39864 * 119.65690 * 0.02562 * 3 2 1 5 5 C 1.35978 * 120.87508 * 180.02562 * 4 3 2 6 6 C 1.40608 * 119.94322 * 359.95478 * 5 4 3 7 7 N 1.33813 * 120.87267 * 180.31879 * 6 5 4 8 8 C 1.32072 * 119.68664 * 180.22487 * 7 6 5 9 9 N 1.38586 * 119.74447 * 179.77408 * 8 7 6 10 10 C 1.46502 * 119.99734 * 90.01492 * 9 8 7 11 11 C 1.36828 * 120.00007 * 270.01444 * 9 8 7 12 12 H 1.07997 * 119.99708 * 334.95830 * 11 9 8 13 13 C 1.38871 * 119.99859 * 154.96594 * 11 9 8 14 14 N 1.31527 * 119.99740 * 158.96142 * 13 11 9 15 15 Si 1.86803 * 120.00005 * 339.23797 * 13 11 9 16 16 H 1.48496 * 109.47337 * 84.73768 * 15 13 11 17 17 H 1.48501 * 109.47031 * 204.73921 * 15 13 11 18 18 H 1.48501 * 109.46840 * 324.73987 * 15 13 11 19 19 C 1.40577 * 120.50670 * 359.49919 * 8 7 6 20 20 C 1.50700 * 119.70362 * 180.24899 * 19 8 7 21 21 N 1.31124 * 120.58988 * 0.22817 * 19 8 7 22 22 C 1.33996 * 119.86382 * 0.02562 * 21 19 8 23 23 C 1.37618 * 119.65591 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47054 * 60.00062 * 1 2 3 25 25 H 1.08994 * 109.47233 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47183 * 299.99961 * 1 2 3 27 27 H 1.08003 * 119.56248 * 359.97438 * 4 3 2 28 28 H 1.08008 * 120.02949 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.46950 * 274.21047 * 10 9 8 30 30 H 1.09001 * 109.47363 * 34.21140 * 10 9 8 31 31 H 1.08994 * 109.47030 * 154.21296 * 10 9 8 32 32 H 0.97000 * 119.99501 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.46912 * 92.98821 * 20 19 8 34 34 H 1.08992 * 109.47039 * 212.98795 * 20 19 8 35 35 H 1.09001 * 109.47357 * 332.99009 * 20 19 8 36 36 H 1.07998 * 120.19899 * 0.02878 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2771 2.3790 0.0005 5 6 1.8686 3.6034 0.0000 6 6 3.2710 3.7054 -0.0001 7 7 3.8725 4.9007 0.0058 8 6 5.1914 4.9693 0.0010 9 7 5.8156 6.2066 0.0024 10 6 6.1506 6.8566 1.2719 11 6 6.1190 6.8211 -1.1819 12 1 6.2600 6.2314 -2.0756 13 6 6.2458 8.2030 -1.2346 14 7 6.9207 8.7646 -2.2139 15 14 5.4645 9.2638 0.0897 16 1 6.3832 9.3608 1.2523 17 1 5.2068 10.6221 -0.4522 18 1 4.1824 8.6517 0.5218 19 6 5.9669 3.7968 0.0004 20 6 7.4707 3.8961 0.0006 21 7 5.3936 2.6175 0.0001 22 6 4.0568 2.5255 -0.0002 23 6 3.4206 1.2743 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.1995 2.3078 0.0005 28 1 1.2617 4.4969 0.0000 29 1 5.2893 7.4210 1.6294 30 1 6.4197 6.0992 2.0080 31 1 6.9919 7.5333 1.1226 32 1 7.0096 9.7298 -2.2505 33 1 7.8366 3.8660 1.0269 34 1 7.8900 3.0603 -0.5593 35 1 7.7730 4.8339 -0.4655 36 1 4.0064 0.3671 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:27 Heat of formation + Delta-G solvation = 66.686435 kcal Electronic energy + Delta-G solvation = -20590.027637 eV Core-core repulsion = 17462.216745 eV Total energy + Delta-G solvation = -3127.810893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02265 -39.48638 -36.96111 -35.42938 -33.97897 -31.91894 -31.28662 -29.80016 -27.64206 -27.27520 -26.31108 -24.79708 -22.56962 -22.08051 -21.70078 -18.68670 -17.96386 -17.15440 -16.71883 -16.07736 -15.89332 -15.50419 -15.00761 -14.48124 -14.36299 -13.86015 -13.26282 -13.12108 -12.81171 -12.65820 -12.56057 -12.40641 -12.23726 -11.93847 -11.69634 -11.53347 -11.18141 -10.98804 -10.94321 -10.42138 -10.26501 -10.23045 -9.70440 -9.15749 -8.51329 -8.40320 -7.78923 -7.38272 -6.15644 -3.59529 0.55387 0.97560 2.31665 3.01604 3.09469 3.24151 3.41685 3.48278 4.15493 4.38373 4.39337 4.52853 4.65478 4.73572 4.88079 4.95106 4.96297 5.12695 5.22803 5.26843 5.42054 5.63678 5.74379 6.01809 6.02725 6.07438 6.10292 6.17684 6.25868 6.29088 6.45066 6.50134 6.58739 6.86907 7.27100 7.63629 7.86927 8.16115 8.40508 8.73559 9.47031 9.72602 10.97984 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029340 B = 0.004972 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.104220 B = 5630.011212 C = 6159.611774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.125 3.875 4 C -0.183 4.183 5 C -0.042 4.042 6 C 0.060 3.940 7 N -0.445 5.445 8 C 0.377 3.623 9 N -0.549 5.549 10 C 0.104 3.896 11 C -0.274 4.274 12 H 0.093 0.907 13 C 0.042 3.958 14 N -0.891 5.891 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.301 1.301 18 H -0.271 1.271 19 C 0.132 3.868 20 C -0.100 4.100 21 N -0.447 5.447 22 C 0.100 3.900 23 C -0.127 4.127 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.021 0.979 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.269 0.731 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 -13.297 6.432 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.204 4.204 5 C -0.062 4.062 6 C -0.066 4.066 7 N -0.163 5.163 8 C 0.131 3.869 9 N -0.270 5.270 10 C -0.040 4.040 11 C -0.401 4.401 12 H 0.110 0.890 13 C -0.160 4.160 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.229 1.229 18 H -0.196 1.196 19 C -0.028 4.028 20 C -0.157 4.157 21 N -0.163 5.163 22 C -0.023 4.023 23 C -0.147 4.147 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.949 -13.408 6.349 17.325 hybrid contribution -1.018 0.958 0.542 1.499 sum -9.967 -12.450 6.891 17.373 Atomic orbital electron populations 1.23059 0.78508 1.03851 1.01422 1.86063 1.21250 1.26682 1.88936 1.18755 0.91808 0.84057 0.97515 1.21004 1.00240 0.91913 1.07194 1.20673 0.92354 0.97662 0.95499 1.19603 0.94904 0.89350 1.02739 1.69062 1.12711 1.24963 1.09571 1.19469 0.86613 0.89590 0.91194 1.41572 1.63572 1.17649 1.04209 1.21582 0.99246 0.96986 0.86168 1.18781 1.43326 0.90274 0.87690 0.88985 1.25222 0.97605 0.96332 0.96873 1.69759 1.39039 1.11137 1.33188 0.87020 0.81006 0.79142 0.81119 1.20823 1.22867 1.19588 1.23179 0.98988 0.88528 0.92118 1.20745 0.87239 1.04941 1.02816 1.68468 1.09098 1.26459 1.12276 1.19055 0.90241 0.93178 0.99868 1.19868 0.90929 0.96782 1.07135 0.92570 0.88306 0.92620 0.84783 0.84364 0.96126 0.94146 0.90536 0.92136 0.90637 0.91009 0.87677 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.80 101.05 0.99 1.19 16 2 O -0.32 -3.79 10.48 -19.33 -0.20 -3.99 16 3 C 0.13 1.74 6.67 -39.20 -0.26 1.48 16 4 C -0.18 -2.35 8.94 -39.78 -0.36 -2.71 16 5 C -0.04 -0.66 9.96 -39.50 -0.39 -1.05 16 6 C 0.06 1.16 6.59 -84.76 -0.56 0.60 16 7 N -0.45 -10.04 10.49 -10.02 -0.11 -10.14 16 8 C 0.38 8.49 6.02 -155.15 -0.93 7.55 16 9 N -0.55 -13.06 1.88 -122.20 -0.23 -13.29 16 10 C 0.10 2.21 8.31 59.85 0.50 2.70 16 11 C -0.27 -7.42 9.37 -15.09 -0.14 -7.57 16 12 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 13 C 0.04 1.16 5.22 -17.45 -0.09 1.07 16 14 N -0.89 -26.00 13.96 55.49 0.77 -25.23 16 15 Si 0.89 21.76 23.99 -169.99 -4.08 17.69 16 16 H -0.28 -6.41 6.40 56.52 0.36 -6.05 16 17 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.27 -6.84 6.79 56.52 0.38 -6.46 16 19 C 0.13 2.65 6.82 -82.01 -0.56 2.09 16 20 C -0.10 -1.68 9.98 36.01 0.36 -1.32 16 21 N -0.45 -8.68 10.36 -6.88 -0.07 -8.75 16 22 C 0.10 1.87 6.59 -84.77 -0.56 1.31 16 23 C -0.13 -2.01 9.94 -39.01 -0.39 -2.40 16 24 H 0.06 0.37 7.64 -51.93 -0.40 -0.03 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.36 7.64 -51.93 -0.40 -0.04 16 27 H 0.13 1.24 6.23 -52.48 -0.33 0.92 16 28 H 0.14 1.97 8.06 -52.48 -0.42 1.54 16 29 H 0.02 0.45 5.61 -51.93 -0.29 0.16 16 30 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.08 1.63 5.81 -51.93 -0.30 1.33 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.97 6.81 -51.93 -0.35 1.61 16 36 H 0.14 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 300.40 15.07 4.53 4.53 Total: -1.00 -31.60 300.40 -5.99 -37.60 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.22 Total: -1.37 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.39 Total: 2.96 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.37 Total: -57.41 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.20 Total: -3.99 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.08 Total: 17.69 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.60 -5.99 -37.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.286 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds