Wall clock time and date at job start Mon Mar 30 2020 01:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35869 * 117.00139 * 2 1 4 4 C 1.39864 * 119.65690 * 0.02562 * 3 2 1 5 5 C 1.35978 * 120.87508 * 180.02562 * 4 3 2 6 6 C 1.40608 * 119.94322 * 359.95478 * 5 4 3 7 7 N 1.33813 * 120.87267 * 180.31879 * 6 5 4 8 8 C 1.32072 * 119.68664 * 180.22487 * 7 6 5 9 9 N 1.38586 * 119.74447 * 179.77408 * 8 7 6 10 10 C 1.46502 * 119.99734 * 90.01492 * 9 8 7 11 11 C 1.36828 * 120.00007 * 270.01444 * 9 8 7 12 12 H 1.07997 * 119.99708 * 334.95830 * 11 9 8 13 13 C 1.38871 * 119.99859 * 154.96594 * 11 9 8 14 14 N 1.31527 * 119.99740 * 158.96142 * 13 11 9 15 15 Si 1.86803 * 120.00005 * 339.23797 * 13 11 9 16 16 H 1.48496 * 109.47337 * 84.73768 * 15 13 11 17 17 H 1.48501 * 109.47031 * 204.73921 * 15 13 11 18 18 H 1.48501 * 109.46840 * 324.73987 * 15 13 11 19 19 C 1.40577 * 120.50670 * 359.49919 * 8 7 6 20 20 C 1.50700 * 119.70362 * 180.24899 * 19 8 7 21 21 N 1.31124 * 120.58988 * 0.22817 * 19 8 7 22 22 C 1.33996 * 119.86382 * 0.02562 * 21 19 8 23 23 C 1.37618 * 119.65591 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47054 * 60.00062 * 1 2 3 25 25 H 1.08994 * 109.47233 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47183 * 299.99961 * 1 2 3 27 27 H 1.08003 * 119.56248 * 359.97438 * 4 3 2 28 28 H 1.08008 * 120.02949 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.46950 * 274.21047 * 10 9 8 30 30 H 1.09001 * 109.47363 * 34.21140 * 10 9 8 31 31 H 1.08994 * 109.47030 * 154.21296 * 10 9 8 32 32 H 0.97000 * 119.99501 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.46912 * 92.98821 * 20 19 8 34 34 H 1.08992 * 109.47039 * 212.98795 * 20 19 8 35 35 H 1.09001 * 109.47357 * 332.99009 * 20 19 8 36 36 H 1.07998 * 120.19899 * 0.02878 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2771 2.3790 0.0005 5 6 1.8686 3.6034 0.0000 6 6 3.2710 3.7054 -0.0001 7 7 3.8725 4.9007 0.0058 8 6 5.1914 4.9693 0.0010 9 7 5.8156 6.2066 0.0024 10 6 6.1506 6.8566 1.2719 11 6 6.1190 6.8211 -1.1819 12 1 6.2600 6.2314 -2.0756 13 6 6.2458 8.2030 -1.2346 14 7 6.9207 8.7646 -2.2139 15 14 5.4645 9.2638 0.0897 16 1 6.3832 9.3608 1.2523 17 1 5.2068 10.6221 -0.4522 18 1 4.1824 8.6517 0.5218 19 6 5.9669 3.7968 0.0004 20 6 7.4707 3.8961 0.0006 21 7 5.3936 2.6175 0.0001 22 6 4.0568 2.5255 -0.0002 23 6 3.4206 1.2743 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.1995 2.3078 0.0005 28 1 1.2617 4.4969 0.0000 29 1 5.2893 7.4210 1.6294 30 1 6.4197 6.0992 2.0080 31 1 6.9919 7.5333 1.1226 32 1 7.0096 9.7298 -2.2505 33 1 7.8366 3.8660 1.0269 34 1 7.8900 3.0603 -0.5593 35 1 7.7730 4.8339 -0.4655 36 1 4.0064 0.3671 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:27 Heat of formation + Delta-G solvation = 44.993707 kcal Electronic energy + Delta-G solvation = -20590.968305 eV Core-core repulsion = 17462.216745 eV Total energy + Delta-G solvation = -3128.751560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.42115 -40.60937 -38.45450 -36.87220 -35.51181 -33.82659 -32.67801 -31.08303 -28.98502 -28.27550 -27.95920 -26.45686 -23.93571 -23.39162 -23.29648 -19.89715 -19.51597 -18.90709 -18.16123 -17.27432 -17.23990 -16.79146 -16.56601 -15.93069 -15.60533 -15.11306 -14.99209 -14.48827 -14.38619 -14.26095 -14.01773 -13.69069 -13.51942 -13.31564 -12.99725 -12.84542 -12.55717 -12.37427 -12.35263 -12.15909 -12.12882 -11.68720 -11.46986 -11.00657 -10.24561 -9.71674 -9.24154 -9.06520 -8.26692 -5.69362 -0.78557 -0.41893 0.91113 1.29323 1.42667 1.52355 1.72647 2.14511 2.35055 2.58102 2.95840 3.03369 3.20823 3.35616 3.53295 3.66689 3.92009 4.02360 4.28196 4.36648 4.42886 4.45502 4.47209 4.57455 4.74303 4.78274 4.80432 4.83937 4.91411 4.92735 5.06722 5.12553 5.29557 5.47367 5.71297 6.01517 6.26644 6.34738 6.76281 6.90081 7.45745 7.74580 8.91229 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029340 B = 0.004972 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.104220 B = 5630.011212 C = 6159.611774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.323 6.323 3 C 0.151 3.849 4 C -0.157 4.157 5 C -0.052 4.052 6 C 0.032 3.968 7 N -0.470 5.470 8 C 0.344 3.656 9 N -0.557 5.557 10 C 0.102 3.898 11 C -0.263 4.263 12 H 0.054 0.946 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.947 3.053 16 H -0.251 1.251 17 H -0.306 1.306 18 H -0.283 1.283 19 C 0.121 3.879 20 C -0.090 4.090 21 N -0.450 5.450 22 C 0.090 3.910 23 C -0.148 4.148 24 H 0.070 0.930 25 H 0.123 0.877 26 H 0.072 0.928 27 H 0.181 0.819 28 H 0.151 0.849 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.269 0.731 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.448 -15.418 8.101 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.236 6.236 3 C 0.102 3.898 4 C -0.177 4.177 5 C -0.072 4.072 6 C -0.094 4.094 7 N -0.187 5.187 8 C 0.099 3.901 9 N -0.279 5.279 10 C -0.041 4.041 11 C -0.391 4.391 12 H 0.072 0.928 13 C -0.204 4.204 14 N -0.580 5.580 15 Si 0.775 3.225 16 H -0.176 1.176 17 H -0.235 1.235 18 H -0.209 1.209 19 C -0.038 4.038 20 C -0.148 4.148 21 N -0.166 5.166 22 C -0.033 4.033 23 C -0.169 4.169 24 H 0.089 0.911 25 H 0.142 0.858 26 H 0.091 0.909 27 H 0.198 0.802 28 H 0.169 0.831 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.494 -15.564 8.051 20.956 hybrid contribution -0.534 1.221 0.013 1.332 sum -12.028 -14.343 8.064 20.382 Atomic orbital electron populations 1.23517 0.75628 1.06220 1.02927 1.86095 1.24110 1.25410 1.87942 1.18845 0.91334 0.85280 0.94294 1.21426 1.02401 0.90169 1.03708 1.20885 0.90753 0.99508 0.96008 1.20026 0.96640 0.88559 1.04145 1.68852 1.13057 1.27063 1.09772 1.19580 0.87080 0.89474 0.93973 1.41427 1.64638 1.17998 1.03795 1.21633 0.98753 0.97869 0.85847 1.18514 1.42635 0.90096 0.87880 0.92833 1.25742 0.98244 0.97293 0.99142 1.69869 1.41135 1.11343 1.35694 0.86063 0.79878 0.76808 0.79744 1.17605 1.23467 1.20906 1.23314 0.99999 0.87929 0.92597 1.20694 0.85638 1.04147 1.04303 1.68509 1.09804 1.25876 1.12441 1.19419 0.90110 0.94187 0.99612 1.19955 0.92256 0.95890 1.08760 0.91116 0.85847 0.90897 0.80180 0.83124 0.96631 0.90957 0.90879 0.92152 0.88198 0.89539 0.90113 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.80 113.37 1.11 1.21 16 2 O -0.32 -6.31 10.48 -92.07 -0.96 -7.27 16 3 C 0.15 3.63 6.67 22.52 0.15 3.78 16 4 C -0.16 -3.37 8.94 22.14 0.20 -3.17 16 5 C -0.05 -1.51 9.96 22.32 0.22 -1.29 16 6 C 0.03 1.24 6.59 40.29 0.27 1.51 16 7 N -0.47 -21.50 10.49 -185.60 -1.95 -23.45 16 8 C 0.34 15.86 6.02 133.66 0.81 16.66 16 9 N -0.56 -27.15 1.88 -540.54 -1.01 -28.17 16 10 C 0.10 4.30 8.31 127.77 1.06 5.36 16 11 C -0.26 -14.92 9.37 84.07 0.79 -14.13 16 12 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 13 C -0.01 -0.36 5.22 84.89 0.44 0.09 16 14 N -0.94 -56.83 13.96 21.66 0.30 -56.53 16 15 Si 0.95 45.81 23.99 68.60 1.65 47.46 16 16 H -0.25 -10.81 6.40 99.48 0.64 -10.17 16 17 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 18 H -0.28 -14.13 6.79 99.48 0.68 -13.46 16 19 C 0.12 4.91 6.82 43.24 0.29 5.21 16 20 C -0.09 -3.06 9.98 71.24 0.71 -2.35 16 21 N -0.45 -17.49 10.36 -175.69 -1.82 -19.31 16 22 C 0.09 3.33 6.59 40.20 0.26 3.60 16 23 C -0.15 -4.42 9.94 22.64 0.23 -4.20 16 24 H 0.07 0.52 7.64 -2.39 -0.02 0.50 16 25 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.50 7.64 -2.39 -0.02 0.48 16 27 H 0.18 2.20 6.23 -2.91 -0.02 2.18 16 28 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 29 H 0.02 0.67 5.61 -2.38 -0.01 0.66 16 30 H 0.07 2.53 8.08 -2.39 -0.02 2.52 16 31 H 0.07 3.08 5.81 -2.39 -0.01 3.07 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.08 3.15 6.81 -2.39 -0.02 3.13 16 36 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -72.07 300.40 3.74 -68.33 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.00 Total: 6.68 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.54 Total: 12.27 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -4.48 Total: -127.46 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.96 Total: -7.27 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.65 Total: 47.46 kcal Total: -72.07 3.74 -68.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.319 kcal (2) G-P(sol) polarization free energy of solvation -72.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds