Wall clock time and date at job start Mon Mar 30 2020 01:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.36915 * 125.04599 * 2 1 4 4 H 0.96998 * 124.98982 * 0.02562 * 3 2 1 5 5 C 1.37424 * 110.02680 * 179.75458 * 3 2 1 6 6 N 1.32652 * 133.19159 * 180.20038 * 5 3 2 7 7 C 1.31594 * 121.67194 * 180.02562 * 6 5 3 8 8 C 1.38661 * 121.57902 * 0.02747 * 7 6 5 9 9 C 1.38202 * 119.41360 * 359.97438 * 8 7 6 10 10 C 1.39689 * 118.04193 * 359.97438 * 9 8 7 11 11 C 1.34231 * 125.04107 * 180.18730 * 2 1 3 12 12 C 1.50696 * 126.56854 * 359.97438 * 11 2 1 13 13 C 1.50705 * 109.47090 * 270.28703 * 12 11 2 14 14 O 1.21295 * 119.99815 * 359.97438 * 13 12 11 15 15 N 1.34767 * 120.00259 * 180.02562 * 13 12 11 16 16 C 1.46508 * 119.99972 * 359.97438 * 15 13 12 17 17 C 1.37097 * 120.00295 * 180.02562 * 15 13 12 18 18 H 1.07992 * 119.99940 * 24.38798 * 17 15 13 19 19 C 1.38952 * 120.00032 * 204.39800 * 17 15 13 20 20 N 1.31408 * 120.00146 * 12.63009 * 19 17 15 21 21 Si 1.86804 * 119.99862 * 192.63700 * 19 17 15 22 22 H 1.48507 * 109.47023 * 59.99526 * 21 19 17 23 23 H 1.48499 * 109.47008 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46829 * 299.99594 * 21 19 17 25 25 H 1.08996 * 109.47506 * 90.02292 * 1 2 3 26 26 H 1.08997 * 109.47609 * 210.03264 * 1 2 3 27 27 H 1.09007 * 109.46971 * 330.02841 * 1 2 3 28 28 H 1.07998 * 119.20850 * 179.97438 * 7 6 5 29 29 H 1.08000 * 120.29320 * 179.97438 * 8 7 6 30 30 H 1.07996 * 120.97436 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.47136 * 30.28769 * 12 11 2 32 32 H 1.08999 * 109.47050 * 150.28920 * 12 11 2 33 33 H 1.08996 * 109.46806 * 85.86362 * 16 15 13 34 34 H 1.08997 * 109.46974 * 205.86426 * 16 15 13 35 35 H 1.09003 * 109.46954 * 325.86453 * 16 15 13 36 36 H 0.97000 * 120.00205 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2932 1.1209 0.0000 4 1 1.9620 2.0326 0.0004 5 6 3.6204 0.7648 0.0055 6 7 4.7480 1.4636 0.0111 7 6 5.9252 0.8756 0.0153 8 6 6.0471 -0.5056 0.0135 9 6 4.9075 -1.2875 0.0076 10 6 3.6685 -0.6424 0.0044 11 6 2.2777 -1.0990 -0.0036 12 6 1.8022 -2.5290 -0.0077 13 6 1.6375 -3.0077 1.4117 14 8 1.8826 -2.2612 2.3358 15 7 1.2189 -4.2655 1.6544 16 6 0.9234 -5.1674 0.5383 17 6 1.0686 -4.7009 2.9457 18 1 0.8944 -3.9888 3.7388 19 6 1.1404 -6.0582 3.2341 20 7 1.5937 -6.8987 2.3313 21 14 0.5926 -6.6883 4.9052 22 1 -0.8384 -6.3518 5.1163 23 1 0.7676 -8.1619 4.9602 24 1 1.4126 -6.0520 5.9672 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8896 0.5143 27 1 -0.3633 0.8903 0.5134 28 1 6.8179 1.4835 0.0194 29 1 7.0239 -0.9663 0.0165 30 1 4.9730 -2.3654 0.0057 31 1 0.8453 -2.5923 -0.5259 32 1 2.5344 -3.1538 -0.5192 33 1 1.8408 -5.6605 0.2171 34 1 0.2007 -5.9177 0.8590 35 1 0.5089 -4.5949 -0.2915 36 1 1.6435 -7.8463 2.5325 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182616294.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:57 Heat of formation + Delta-G solvation = 39.722004 kcal Electronic energy + Delta-G solvation = -20656.712355 eV Core-core repulsion = 17527.732197 eV Total energy + Delta-G solvation = -3128.980158 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.33988 -38.38583 -37.62710 -34.62960 -33.11808 -31.68397 -31.26856 -30.57982 -28.14271 -26.55590 -25.86676 -24.07563 -22.71931 -21.85090 -19.86519 -18.21698 -17.69896 -16.79902 -16.31915 -15.94548 -15.74659 -14.94796 -14.48050 -14.34177 -14.04440 -13.93082 -13.19155 -12.92477 -12.88393 -12.61778 -12.31359 -12.08772 -11.88847 -11.59411 -11.52947 -11.37352 -11.19757 -10.89133 -10.81445 -10.38080 -10.19963 -9.99918 -9.16593 -8.95536 -8.34838 -8.12603 -7.59251 -7.49139 -6.27307 -3.83288 1.26915 1.63929 2.87179 2.99596 3.21492 3.26601 3.30931 3.98348 4.14608 4.21329 4.72092 4.85896 4.96541 5.08611 5.15813 5.24506 5.34762 5.41302 5.47718 5.61008 5.77793 5.86330 5.97979 6.03751 6.07250 6.13791 6.30903 6.41873 6.57292 6.72217 6.87633 6.93625 7.22868 7.24804 7.55315 7.60957 8.20920 8.24469 8.55891 9.26027 9.49181 10.07591 10.77716 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.004940 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.537355 B = 5666.139595 C = 6130.390637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.089 3.911 3 N -0.580 5.580 4 H 0.414 0.586 5 C 0.285 3.715 6 N -0.505 5.505 7 C 0.127 3.873 8 C -0.209 4.209 9 C -0.022 4.022 10 C -0.129 4.129 11 C -0.117 4.117 12 C -0.061 4.061 13 C 0.451 3.549 14 O -0.579 6.579 15 N -0.452 5.452 16 C 0.112 3.888 17 C -0.304 4.304 18 H 0.095 0.905 19 C 0.030 3.970 20 N -0.885 5.885 21 Si 0.924 3.076 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 9.442 -9.043 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.018 4.018 3 N -0.187 5.187 4 H 0.251 0.749 5 C 0.052 3.948 6 N -0.219 5.219 7 C -0.038 4.038 8 C -0.230 4.230 9 C -0.049 4.049 10 C -0.136 4.136 11 C -0.125 4.125 12 C -0.102 4.102 13 C 0.239 3.761 14 O -0.463 6.463 15 N -0.171 5.171 16 C -0.032 4.032 17 C -0.432 4.432 18 H 0.113 0.887 19 C -0.173 4.173 20 N -0.524 5.524 21 Si 0.751 3.249 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.173 0.827 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.174 10.584 -8.592 13.683 hybrid contribution -0.169 -1.040 0.817 1.333 sum 1.005 9.543 -7.775 12.351 Atomic orbital electron populations 1.20454 0.87377 1.04226 1.02657 1.19971 0.93194 0.84687 1.03910 1.41318 1.02657 1.08422 1.66351 0.74926 1.18246 0.85356 0.89823 1.01364 1.66409 0.96661 1.40980 1.17861 1.22296 0.93159 0.92493 0.95846 1.21763 0.99046 0.94948 1.07275 1.20998 0.90315 1.00335 0.93210 1.19714 0.94113 0.93295 1.06508 1.19483 0.89978 0.93818 1.09182 1.19975 1.01605 0.91354 0.97271 1.20042 0.82515 0.83813 0.89770 1.90532 1.54382 1.55501 1.45867 1.43576 1.57087 1.09985 1.06500 1.21464 1.01234 0.93197 0.87285 1.19562 1.47027 0.91757 0.84860 0.88716 1.25308 0.96553 0.96298 0.99103 1.69978 1.43912 1.03656 1.34889 0.86038 0.79272 0.77385 0.82221 1.20001 1.20997 1.19893 0.90605 0.89211 0.91360 0.82743 0.84905 0.84956 0.89708 0.89601 0.93130 0.90819 0.95637 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.99 36.00 0.36 -0.74 16 2 C 0.09 1.41 7.08 -81.74 -0.58 0.83 16 3 N -0.58 -8.76 6.05 -8.43 -0.05 -8.81 16 4 H 0.41 4.88 8.96 -40.82 -0.37 4.51 16 5 C 0.29 4.99 8.43 -155.69 -1.31 3.68 16 6 N -0.51 -8.34 10.39 -12.27 -0.13 -8.46 16 7 C 0.13 1.77 11.15 -17.50 -0.20 1.58 16 8 C -0.21 -2.89 10.10 -39.44 -0.40 -3.29 16 9 C -0.02 -0.37 10.22 -39.05 -0.40 -0.77 16 10 C -0.13 -2.38 6.37 -105.11 -0.67 -3.05 16 11 C -0.12 -2.14 4.81 -102.76 -0.49 -2.64 16 12 C -0.06 -1.13 4.38 -29.03 -0.13 -1.26 16 13 C 0.45 10.91 7.62 -10.99 -0.08 10.83 16 14 O -0.58 -16.27 15.75 5.54 0.09 -16.18 16 15 N -0.45 -11.47 3.01 -122.19 -0.37 -11.84 16 16 C 0.11 2.44 8.44 59.85 0.51 2.95 16 17 C -0.30 -8.50 9.24 -14.93 -0.14 -8.63 16 18 H 0.10 2.78 7.45 -52.49 -0.39 2.39 16 19 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 20 N -0.88 -23.61 10.84 55.50 0.60 -23.01 16 21 Si 0.92 20.88 29.57 -169.99 -5.03 15.85 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.24 7.68 -51.93 -0.40 0.84 16 27 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.08 1.33 6.98 -51.93 -0.36 0.96 16 32 H 0.09 1.49 8.11 -51.93 -0.42 1.06 16 33 H 0.05 1.13 7.83 -51.93 -0.41 0.73 16 34 H 0.07 1.70 6.80 -51.93 -0.35 1.35 16 35 H 0.03 0.45 6.61 -51.93 -0.34 0.10 16 36 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -34.16 308.98 -8.14 -42.29 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.29 Total: 5.31 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -3.62 Total: 0.19 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.06 Total: -52.13 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.09 Total: -16.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.16 -8.14 -42.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182616294.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.017 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds