Wall clock time and date at job start Mon Mar 30 2020 01:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.36915 * 125.04599 * 2 1 4 4 H 0.96998 * 124.98982 * 0.02562 * 3 2 1 5 5 C 1.37424 * 110.02680 * 179.75458 * 3 2 1 6 6 N 1.32652 * 133.19159 * 180.20038 * 5 3 2 7 7 C 1.31594 * 121.67194 * 180.02562 * 6 5 3 8 8 C 1.38661 * 121.57902 * 0.02747 * 7 6 5 9 9 C 1.38202 * 119.41360 * 359.97438 * 8 7 6 10 10 C 1.39689 * 118.04193 * 359.97438 * 9 8 7 11 11 C 1.34231 * 125.04107 * 180.18730 * 2 1 3 12 12 C 1.50696 * 126.56854 * 359.97438 * 11 2 1 13 13 C 1.50705 * 109.47090 * 270.28703 * 12 11 2 14 14 O 1.21295 * 119.99815 * 359.97438 * 13 12 11 15 15 N 1.34767 * 120.00259 * 180.02562 * 13 12 11 16 16 C 1.46508 * 119.99972 * 359.97438 * 15 13 12 17 17 C 1.37097 * 120.00295 * 180.02562 * 15 13 12 18 18 H 1.07992 * 119.99940 * 24.38798 * 17 15 13 19 19 C 1.38952 * 120.00032 * 204.39800 * 17 15 13 20 20 N 1.31408 * 120.00146 * 12.63009 * 19 17 15 21 21 Si 1.86804 * 119.99862 * 192.63700 * 19 17 15 22 22 H 1.48507 * 109.47023 * 59.99526 * 21 19 17 23 23 H 1.48499 * 109.47008 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46829 * 299.99594 * 21 19 17 25 25 H 1.08996 * 109.47506 * 90.02292 * 1 2 3 26 26 H 1.08997 * 109.47609 * 210.03264 * 1 2 3 27 27 H 1.09007 * 109.46971 * 330.02841 * 1 2 3 28 28 H 1.07998 * 119.20850 * 179.97438 * 7 6 5 29 29 H 1.08000 * 120.29320 * 179.97438 * 8 7 6 30 30 H 1.07996 * 120.97436 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.47136 * 30.28769 * 12 11 2 32 32 H 1.08999 * 109.47050 * 150.28920 * 12 11 2 33 33 H 1.08996 * 109.46806 * 85.86362 * 16 15 13 34 34 H 1.08997 * 109.46974 * 205.86426 * 16 15 13 35 35 H 1.09003 * 109.46954 * 325.86453 * 16 15 13 36 36 H 0.97000 * 120.00205 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2932 1.1209 0.0000 4 1 1.9620 2.0326 0.0004 5 6 3.6204 0.7648 0.0055 6 7 4.7480 1.4636 0.0111 7 6 5.9252 0.8756 0.0153 8 6 6.0471 -0.5056 0.0135 9 6 4.9075 -1.2875 0.0076 10 6 3.6685 -0.6424 0.0044 11 6 2.2777 -1.0990 -0.0036 12 6 1.8022 -2.5290 -0.0077 13 6 1.6375 -3.0077 1.4117 14 8 1.8826 -2.2612 2.3358 15 7 1.2189 -4.2655 1.6544 16 6 0.9234 -5.1674 0.5383 17 6 1.0686 -4.7009 2.9457 18 1 0.8944 -3.9888 3.7388 19 6 1.1404 -6.0582 3.2341 20 7 1.5937 -6.8987 2.3313 21 14 0.5926 -6.6883 4.9052 22 1 -0.8384 -6.3518 5.1163 23 1 0.7676 -8.1619 4.9602 24 1 1.4126 -6.0520 5.9672 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8896 0.5143 27 1 -0.3633 0.8903 0.5134 28 1 6.8179 1.4835 0.0194 29 1 7.0239 -0.9663 0.0165 30 1 4.9730 -2.3654 0.0057 31 1 0.8453 -2.5923 -0.5259 32 1 2.5344 -3.1538 -0.5192 33 1 1.8408 -5.6605 0.2171 34 1 0.2007 -5.9177 0.8590 35 1 0.5089 -4.5949 -0.2915 36 1 1.6435 -7.8463 2.5325 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182616294.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:56 Heat of formation + Delta-G solvation = 17.893828 kcal Electronic energy + Delta-G solvation = -20657.658895 eV Core-core repulsion = 17527.732197 eV Total energy + Delta-G solvation = -3129.926699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.54280 -40.20064 -38.85844 -36.58717 -34.45200 -33.59038 -32.52833 -31.80009 -29.50016 -28.12099 -27.40014 -25.94667 -23.91316 -23.02441 -21.47786 -19.65772 -18.97830 -18.79902 -17.78347 -17.50607 -16.89075 -16.56628 -16.02362 -15.90830 -15.81391 -15.30717 -14.34028 -14.18575 -14.11990 -14.04134 -13.73751 -13.59490 -13.34324 -13.19802 -13.02447 -12.90989 -12.66247 -12.61018 -12.37663 -12.16585 -12.10358 -11.26302 -10.95878 -10.36584 -10.27876 -9.59526 -9.30622 -8.75681 -8.28926 -5.93910 0.07374 0.45883 1.40314 1.41262 1.51125 1.61944 1.84979 2.12596 2.32100 2.95480 3.13321 3.27664 3.61666 3.75663 3.80302 4.10226 4.18114 4.25934 4.30842 4.41666 4.58025 4.63576 4.71160 4.75740 4.83763 4.93014 5.04292 5.08400 5.12566 5.38858 5.43333 5.48013 5.53252 5.72525 6.03205 6.17148 6.45970 6.56579 7.08298 7.24173 7.55278 8.14018 8.73282 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.004940 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.537355 B = 5666.139595 C = 6130.390637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.101 3.899 3 N -0.571 5.571 4 H 0.428 0.572 5 C 0.261 3.739 6 N -0.519 5.519 7 C 0.125 3.875 8 C -0.197 4.197 9 C -0.051 4.051 10 C -0.160 4.160 11 C -0.162 4.162 12 C -0.043 4.043 13 C 0.446 3.554 14 O -0.627 6.627 15 N -0.468 5.468 16 C 0.121 3.879 17 C -0.341 4.341 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.898 5.898 21 Si 0.985 3.015 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.281 1.281 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.197 0.803 29 H 0.168 0.832 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 9.953 -9.965 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.007 4.007 3 N -0.180 5.180 4 H 0.268 0.732 5 C 0.028 3.972 6 N -0.233 5.233 7 C -0.040 4.040 8 C -0.218 4.218 9 C -0.077 4.077 10 C -0.167 4.167 11 C -0.170 4.170 12 C -0.084 4.084 13 C 0.235 3.765 14 O -0.514 6.514 15 N -0.187 5.187 16 C -0.023 4.023 17 C -0.469 4.469 18 H 0.084 0.916 19 C -0.203 4.203 20 N -0.537 5.537 21 Si 0.809 3.191 22 H -0.191 1.191 23 H -0.194 1.194 24 H -0.207 1.207 25 H 0.128 0.872 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.214 0.786 29 H 0.185 0.815 30 H 0.148 0.852 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.180 11.093 -9.551 14.686 hybrid contribution -0.078 -1.142 1.092 1.582 sum 1.102 9.951 -8.460 13.107 Atomic orbital electron populations 1.20578 0.84822 1.04308 1.04831 1.20489 0.94689 0.84310 1.01250 1.41328 1.02021 1.09087 1.65537 0.73237 1.18519 0.86360 0.89836 1.02473 1.66518 0.97113 1.41313 1.18339 1.23074 0.93689 0.93152 0.94079 1.22173 0.99676 0.95002 1.04967 1.21248 0.91046 1.00714 0.94729 1.20073 0.94871 0.94272 1.07522 1.19595 0.90675 0.94166 1.12526 1.19819 1.03443 0.91870 0.93225 1.21028 0.80726 0.82885 0.91818 1.90484 1.56087 1.56684 1.48100 1.43848 1.57410 1.10948 1.06521 1.21439 1.00440 0.92973 0.87397 1.19506 1.49435 0.92111 0.85865 0.91572 1.26017 0.95945 0.95856 1.02533 1.70051 1.43469 1.03967 1.36188 0.85133 0.78982 0.77272 0.77752 1.19095 1.19448 1.20669 0.87234 0.90949 0.89391 0.78632 0.81455 0.85229 0.86617 0.88720 0.94136 0.92514 0.91081 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.98 9.99 71.23 0.71 -1.27 16 2 C 0.10 3.10 7.08 40.85 0.29 3.39 16 3 N -0.57 -16.77 6.05 -180.58 -1.09 -17.86 16 4 H 0.43 9.53 8.96 -92.71 -0.83 8.70 16 5 C 0.26 9.02 8.43 133.93 1.13 10.14 16 6 N -0.52 -16.50 10.39 -192.73 -2.00 -18.50 16 7 C 0.13 3.22 11.15 84.83 0.95 4.16 16 8 C -0.20 -5.14 10.10 22.36 0.23 -4.92 16 9 C -0.05 -1.70 10.22 22.61 0.23 -1.46 16 10 C -0.16 -5.96 6.37 -20.18 -0.13 -6.09 16 11 C -0.16 -5.92 4.81 -18.66 -0.09 -6.01 16 12 C -0.04 -1.58 4.38 29.10 0.13 -1.45 16 13 C 0.45 22.00 7.62 87.66 0.67 22.67 16 14 O -0.63 -36.57 15.75 -3.07 -0.05 -36.62 16 15 N -0.47 -24.19 3.01 -658.89 -1.98 -26.18 16 16 C 0.12 5.21 8.44 127.77 1.08 6.29 16 17 C -0.34 -19.63 9.24 84.04 0.78 -18.86 16 18 H 0.07 4.09 7.45 -2.91 -0.02 4.07 16 19 C 0.00 -0.11 5.04 84.93 0.43 0.32 16 20 N -0.90 -47.97 10.84 21.66 0.23 -47.73 16 21 Si 0.98 43.00 29.57 68.60 2.03 45.03 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 1.92 7.68 -2.39 -0.02 1.90 16 27 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.20 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 30 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 31 H 0.12 3.40 6.98 -2.39 -0.02 3.39 16 32 H 0.09 3.24 8.11 -2.39 -0.02 3.22 16 33 H 0.04 1.80 7.83 -2.39 -0.02 1.79 16 34 H 0.06 2.61 6.80 -2.39 -0.02 2.60 16 35 H 0.07 2.37 6.61 -2.39 -0.02 2.35 16 36 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -76.81 308.98 3.81 -73.00 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.28 Total: 21.94 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 6.39 Total: 6.92 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.84 Total: -110.27 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.05 Total: -36.62 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -76.81 3.81 -73.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182616294.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.890 kcal (2) G-P(sol) polarization free energy of solvation -76.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds