Wall clock time and date at job start Mon Mar 30 2020 01:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38321 * 119.87979 * 2 1 4 4 C 1.38014 * 120.12012 * 179.97438 * 3 2 1 5 5 C 1.39330 * 119.88036 * 359.97438 * 4 3 2 6 6 C 1.48418 * 120.12063 * 179.97438 * 5 4 3 7 7 N 1.30766 * 126.41582 * 0.02948 * 6 5 4 8 8 O 1.21293 * 110.09992 * 179.97438 * 7 6 5 9 9 C 1.33666 * 110.02655 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.43874 * 180.26666 * 9 8 7 11 11 N 1.46903 * 109.46936 * 269.68692 * 10 9 8 12 12 C 1.46903 * 110.99754 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46865 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00479 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99883 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00058 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00094 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47123 * 60.00122 * 17 15 13 19 19 H 1.48494 * 109.47314 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47087 * 300.00402 * 17 15 13 21 21 N 1.30984 * 107.12172 * 0.02562 * 9 8 7 22 22 C 1.39323 * 119.75871 * 0.27473 * 5 4 3 23 23 C 1.38027 * 119.87648 * 359.46707 * 22 5 4 24 24 H 1.09003 * 109.47385 * 89.99693 * 1 2 3 25 25 H 1.08997 * 109.47088 * 209.99546 * 1 2 3 26 26 H 1.09005 * 109.47250 * 329.99647 * 1 2 3 27 27 H 1.08001 * 119.93820 * 359.97438 * 3 2 1 28 28 H 1.08005 * 120.06313 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47181 * 29.68532 * 10 9 8 30 30 H 1.08996 * 109.46937 * 149.68543 * 10 9 8 31 31 H 1.00907 * 110.99951 * 56.04840 * 11 10 9 32 32 H 1.08998 * 109.46834 * 300.00298 * 12 11 10 33 33 H 1.08998 * 109.46581 * 60.00310 * 12 11 10 34 34 H 0.96999 * 120.00246 * 180.02562 * 16 15 13 35 35 H 1.07997 * 120.06108 * 179.70633 * 22 5 4 36 36 H 1.07998 * 119.93527 * 180.25403 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1993 0.0000 4 6 3.5762 1.2051 0.0005 5 6 4.2754 0.0000 0.0016 6 6 5.7596 0.0000 0.0016 7 7 6.5359 1.0523 0.0012 8 8 7.6999 0.7115 0.0019 9 6 7.7864 -0.6223 0.0033 10 6 9.0542 -1.4371 0.0101 11 7 9.4687 -1.7092 -1.3727 12 6 10.7045 -2.5029 -1.4052 13 6 11.0974 -2.7621 -2.8368 14 1 10.4902 -2.3756 -3.6419 15 6 12.2322 -3.4927 -3.1187 16 7 12.9715 -3.9639 -2.1383 17 14 12.7197 -3.8135 -4.8932 18 1 12.9447 -2.5195 -5.5864 19 1 13.9688 -4.6158 -4.9262 20 1 11.6334 -4.5594 -5.5779 21 7 6.5622 -1.0882 0.0030 22 6 3.5763 -1.2051 -0.0037 23 6 2.1960 -1.1993 0.0012 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 1.6531 2.1329 -0.0004 28 1 4.1133 2.1421 0.0001 29 1 9.8400 -0.8821 0.5225 30 1 8.8776 -2.3794 0.5287 31 1 9.5763 -0.8516 -1.8934 32 1 11.5015 -1.9549 -0.9027 33 1 10.5398 -3.4526 -0.8963 34 1 13.7700 -4.4776 -2.3366 35 1 4.1133 -2.1421 -0.0076 36 1 1.6531 -2.1329 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211454830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:22 Heat of formation + Delta-G solvation = 86.394182 kcal Electronic energy + Delta-G solvation = -19167.717970 eV Core-core repulsion = 16040.761669 eV Total energy + Delta-G solvation = -3126.956301 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.37788 -39.54821 -36.14313 -35.61109 -33.49691 -32.59198 -31.62217 -31.15021 -27.96989 -27.57462 -25.10797 -23.94242 -23.03855 -22.04247 -21.62968 -20.70563 -17.94220 -17.81675 -16.62219 -16.31222 -15.49157 -15.44588 -15.09500 -14.61490 -14.12190 -14.07655 -13.67838 -13.65701 -13.36256 -12.86740 -12.77267 -12.52630 -12.23541 -11.69450 -11.57771 -11.52720 -11.40489 -11.31949 -10.88501 -10.80216 -10.76938 -10.27081 -9.94500 -9.33897 -9.19473 -8.63605 -8.55988 -7.61203 -6.10832 -4.13375 0.58443 1.17019 1.42960 2.48540 2.94732 3.31237 3.35127 3.38546 3.53772 3.61776 4.03835 4.38338 4.56577 4.60652 4.77597 4.94429 5.11831 5.16572 5.19750 5.26073 5.26933 5.42273 5.49047 5.54084 5.63759 5.75875 5.82779 5.88145 6.02409 6.22360 6.30438 6.32793 6.68446 6.98762 7.21801 7.62353 7.97371 8.10826 8.25947 8.38008 8.93807 9.51749 11.00118 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.002902 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.964206 B = 9646.270022 C =10066.414496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.125 4.125 4 C -0.081 4.081 5 C -0.022 4.022 6 C 0.206 3.794 7 N -0.384 5.384 8 O 0.075 5.925 9 C 0.208 3.792 10 C 0.147 3.853 11 N -0.681 5.681 12 C 0.196 3.804 13 C -0.518 4.518 14 H 0.063 0.937 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 N -0.465 5.465 22 C -0.070 4.070 23 C -0.124 4.124 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.336 0.664 32 H -0.005 1.005 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.138 0.862 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.603 8.625 6.866 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.143 4.143 4 C -0.101 4.101 5 C -0.024 4.024 6 C -0.064 4.064 7 N -0.092 5.092 8 O 0.016 5.984 9 C -0.013 4.013 10 C 0.016 3.984 11 N -0.314 5.314 12 C 0.070 3.930 13 C -0.557 4.557 14 H 0.081 0.919 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 N -0.199 5.199 22 C -0.089 4.089 23 C -0.142 4.142 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.013 0.987 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.411 8.463 6.851 24.021 hybrid contribution 1.271 0.392 -0.706 1.505 sum -20.140 8.855 6.145 22.843 Atomic orbital electron populations 1.20836 0.90908 1.02968 1.02581 1.20100 0.96338 0.93172 0.97750 1.20926 0.93453 0.97859 1.02077 1.21161 0.94249 0.97183 0.97525 1.17355 0.85241 0.94618 1.05136 1.23930 0.96679 0.84196 1.01621 1.74824 0.89475 1.23227 1.21628 1.85267 1.22076 1.25379 1.65655 1.29090 0.97274 0.81267 0.93663 1.20525 0.85701 0.96796 0.95424 1.60793 1.39453 1.23746 1.07404 1.19643 0.82732 0.92515 0.98078 1.21070 1.08592 1.34196 0.91827 0.91855 1.24967 0.96159 0.95557 0.97703 1.69937 1.15946 1.36205 1.31445 0.86497 0.77760 0.78339 0.84453 1.20203 1.21271 1.20083 1.72020 0.99660 1.28181 1.19990 1.21271 0.94026 0.97658 0.95986 1.21006 0.93619 0.97883 1.01716 0.90858 0.91290 0.91393 0.85428 0.85221 0.91930 0.86844 0.84731 0.98724 0.94665 0.92682 0.84397 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.07 -0.65 5.88 -104.56 -0.62 -1.27 16 3 C -0.13 -1.19 9.68 -39.63 -0.38 -1.57 16 4 C -0.08 -0.96 9.69 -39.26 -0.38 -1.34 16 5 C -0.02 -0.30 5.88 -104.89 -0.62 -0.92 16 6 C 0.21 3.35 7.80 -156.12 -1.22 2.13 16 7 N -0.38 -6.33 11.86 30.97 0.37 -5.96 16 8 O 0.08 1.22 11.29 18.04 0.20 1.43 16 9 C 0.21 3.43 8.01 -12.98 -0.10 3.32 16 10 C 0.15 2.40 6.31 -4.97 -0.03 2.37 16 11 N -0.68 -13.86 6.48 -116.34 -0.75 -14.61 16 12 C 0.20 4.82 5.44 -4.97 -0.03 4.79 16 13 C -0.52 -14.21 9.32 -34.44 -0.32 -14.53 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 17 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 N -0.47 -8.03 11.26 -9.88 -0.11 -8.14 16 22 C -0.07 -0.86 9.70 -39.25 -0.38 -1.24 16 23 C -0.12 -1.22 9.68 -39.63 -0.38 -1.60 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 26 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 27 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.13 1.47 7.87 -52.48 -0.41 1.06 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.34 6.57 8.71 -39.29 -0.34 6.23 16 32 H -0.01 -0.13 8.14 -51.93 -0.42 -0.55 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.14 1.72 7.88 -52.49 -0.41 1.30 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -30.51 321.47 -8.45 -38.95 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.51 Total: 1.06 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -4.20 Total: -8.68 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.24 Total: -53.88 kcal Atomic # 8 Polarization: 1.22 SS G_CDS: 0.20 Total: 1.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.51 -8.45 -38.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.345 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds