Wall clock time and date at job start Mon Mar 30 2020 01:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38321 * 119.87979 * 2 1 4 4 C 1.38014 * 120.12012 * 179.97438 * 3 2 1 5 5 C 1.39330 * 119.88036 * 359.97438 * 4 3 2 6 6 C 1.48418 * 120.12063 * 179.97438 * 5 4 3 7 7 N 1.30766 * 126.41582 * 0.02948 * 6 5 4 8 8 O 1.21293 * 110.09992 * 179.97438 * 7 6 5 9 9 C 1.33666 * 110.02655 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.43874 * 180.26666 * 9 8 7 11 11 N 1.46903 * 109.46936 * 269.68692 * 10 9 8 12 12 C 1.46903 * 110.99754 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46865 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00479 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99883 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00058 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00094 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47123 * 60.00122 * 17 15 13 19 19 H 1.48494 * 109.47314 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47087 * 300.00402 * 17 15 13 21 21 N 1.30984 * 107.12172 * 0.02562 * 9 8 7 22 22 C 1.39323 * 119.75871 * 0.27473 * 5 4 3 23 23 C 1.38027 * 119.87648 * 359.46707 * 22 5 4 24 24 H 1.09003 * 109.47385 * 89.99693 * 1 2 3 25 25 H 1.08997 * 109.47088 * 209.99546 * 1 2 3 26 26 H 1.09005 * 109.47250 * 329.99647 * 1 2 3 27 27 H 1.08001 * 119.93820 * 359.97438 * 3 2 1 28 28 H 1.08005 * 120.06313 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47181 * 29.68532 * 10 9 8 30 30 H 1.08996 * 109.46937 * 149.68543 * 10 9 8 31 31 H 1.00907 * 110.99951 * 56.04840 * 11 10 9 32 32 H 1.08998 * 109.46834 * 300.00298 * 12 11 10 33 33 H 1.08998 * 109.46581 * 60.00310 * 12 11 10 34 34 H 0.96999 * 120.00246 * 180.02562 * 16 15 13 35 35 H 1.07997 * 120.06108 * 179.70633 * 22 5 4 36 36 H 1.07998 * 119.93527 * 180.25403 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1993 0.0000 4 6 3.5762 1.2051 0.0005 5 6 4.2754 0.0000 0.0016 6 6 5.7596 0.0000 0.0016 7 7 6.5359 1.0523 0.0012 8 8 7.6999 0.7115 0.0019 9 6 7.7864 -0.6223 0.0033 10 6 9.0542 -1.4371 0.0101 11 7 9.4687 -1.7092 -1.3727 12 6 10.7045 -2.5029 -1.4052 13 6 11.0974 -2.7621 -2.8368 14 1 10.4902 -2.3756 -3.6419 15 6 12.2322 -3.4927 -3.1187 16 7 12.9715 -3.9639 -2.1383 17 14 12.7197 -3.8135 -4.8932 18 1 12.9447 -2.5195 -5.5864 19 1 13.9688 -4.6158 -4.9262 20 1 11.6334 -4.5594 -5.5779 21 7 6.5622 -1.0882 0.0030 22 6 3.5763 -1.2051 -0.0037 23 6 2.1960 -1.1993 0.0012 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 1.6531 2.1329 -0.0004 28 1 4.1133 2.1421 0.0001 29 1 9.8400 -0.8821 0.5225 30 1 8.8776 -2.3794 0.5287 31 1 9.5763 -0.8516 -1.8934 32 1 11.5015 -1.9549 -0.9027 33 1 10.5398 -3.4526 -0.8963 34 1 13.7700 -4.4776 -2.3366 35 1 4.1133 -2.1421 -0.0076 36 1 1.6531 -2.1329 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:22 Heat of formation + Delta-G solvation = 66.118060 kcal Electronic energy + Delta-G solvation = -19168.597208 eV Core-core repulsion = 16040.761669 eV Total energy + Delta-G solvation = -3127.835539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.65412 -40.37018 -37.66902 -36.92358 -34.99250 -34.07128 -32.83765 -32.02212 -29.68331 -28.36953 -26.83251 -25.09458 -24.05553 -23.51990 -22.99152 -21.72833 -19.23614 -19.13564 -18.45342 -17.36125 -17.05524 -16.46481 -16.27884 -16.11427 -15.43783 -15.18582 -14.74634 -14.48621 -14.47057 -14.40415 -13.93071 -13.64389 -13.35210 -13.15481 -13.01401 -12.76713 -12.62013 -12.54490 -12.37587 -12.31835 -12.07530 -11.91042 -11.46195 -11.27845 -10.64852 -10.01761 -9.52559 -9.31115 -8.22104 -6.32022 -0.43166 0.21329 0.35324 1.33661 1.43883 1.46127 1.54065 1.64030 2.38647 2.42869 2.74490 2.83470 3.12362 3.54534 3.74265 3.88071 3.96338 3.98642 4.23352 4.31644 4.40657 4.45408 4.57301 4.72366 4.78923 4.84139 4.88053 5.04388 5.05420 5.23905 5.24357 5.34160 5.42374 5.56870 5.57847 5.91234 5.96658 6.28599 6.52550 6.83817 6.98815 7.37870 8.88824 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.002902 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.964206 B = 9646.270022 C =10066.414496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.065 4.065 3 C -0.123 4.123 4 C -0.089 4.089 5 C -0.057 4.057 6 C 0.205 3.795 7 N -0.395 5.395 8 O 0.074 5.926 9 C 0.209 3.791 10 C 0.152 3.848 11 N -0.687 5.687 12 C 0.211 3.789 13 C -0.539 4.539 14 H 0.061 0.939 15 C 0.007 3.993 16 N -0.928 5.928 17 Si 0.968 3.032 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.272 1.272 21 N -0.483 5.483 22 C -0.082 4.082 23 C -0.125 4.125 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.157 0.843 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.340 0.660 32 H -0.018 1.018 33 H 0.015 0.985 34 H 0.266 0.734 35 H 0.127 0.873 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.735 9.147 6.359 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.066 4.066 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.059 4.059 6 C -0.064 4.064 7 N -0.104 5.104 8 O 0.017 5.983 9 C -0.012 4.012 10 C 0.022 3.978 11 N -0.320 5.320 12 C 0.084 3.916 13 C -0.577 4.577 14 H 0.079 0.921 15 C -0.192 4.192 16 N -0.568 5.568 17 Si 0.793 3.207 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.197 1.197 21 N -0.217 5.217 22 C -0.102 4.102 23 C -0.143 4.143 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.174 0.826 28 H 0.146 0.854 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.158 0.842 32 H 0.000 1.000 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -23.549 9.004 6.350 25.999 hybrid contribution 1.772 0.261 -0.495 1.858 sum -21.777 9.265 5.855 24.380 Atomic orbital electron populations 1.20924 0.88238 1.04357 1.03656 1.20540 0.98206 0.92482 0.95328 1.21283 0.92518 0.99486 1.00794 1.21271 0.95405 0.96364 0.97826 1.17577 0.84114 0.96100 1.08118 1.24431 0.97881 0.83640 1.00491 1.74800 0.89509 1.23424 1.22674 1.85246 1.22179 1.25120 1.65797 1.28959 0.97053 0.81444 0.93730 1.20507 0.86276 0.97613 0.93421 1.60574 1.37290 1.24024 1.10096 1.19274 0.83878 0.91996 0.96452 1.21450 1.08871 1.34321 0.93089 0.92076 1.25831 0.96135 0.95250 1.01979 1.70044 1.16404 1.36838 1.33540 0.85451 0.77463 0.78479 0.79302 1.19274 1.20709 1.19677 1.72019 1.00141 1.28973 1.20546 1.21313 0.95253 0.96761 0.96878 1.21314 0.92611 0.99545 1.00781 0.89726 0.90098 0.89935 0.82565 0.85425 0.89479 0.86333 0.84228 1.00001 0.96730 0.92490 0.85464 0.82840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.01 71.24 0.71 -0.22 16 2 C -0.06 -0.98 5.88 -19.83 -0.12 -1.10 16 3 C -0.12 -2.05 9.68 22.24 0.22 -1.84 16 4 C -0.09 -2.03 9.69 22.48 0.22 -1.82 16 5 C -0.06 -1.60 5.88 -20.04 -0.12 -1.71 16 6 C 0.21 6.81 7.80 137.30 1.07 7.88 16 7 N -0.40 -13.21 11.86 -59.11 -0.70 -13.92 16 8 O 0.07 2.42 11.29 74.63 0.84 3.26 16 9 C 0.21 6.95 8.01 88.36 0.71 7.65 16 10 C 0.15 4.98 6.31 85.56 0.54 5.52 16 11 N -0.69 -28.17 6.48 -521.99 -3.38 -31.55 16 12 C 0.21 10.54 5.44 85.56 0.47 11.01 16 13 C -0.54 -29.78 9.32 25.60 0.24 -29.54 16 14 H 0.06 3.33 7.81 -2.91 -0.02 3.30 16 15 C 0.01 0.39 5.46 84.66 0.46 0.85 16 16 N -0.93 -54.09 13.29 21.45 0.28 -53.80 16 17 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 N -0.48 -16.97 11.26 -302.48 -3.41 -20.38 16 22 C -0.08 -2.01 9.70 22.48 0.22 -1.79 16 23 C -0.12 -2.22 9.68 22.24 0.22 -2.01 16 24 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 26 H 0.08 0.47 8.08 -2.38 -0.02 0.45 16 27 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 28 H 0.13 2.88 7.87 -2.91 -0.02 2.85 16 29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.34 13.40 8.71 -89.69 -0.78 12.62 16 32 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 33 H 0.01 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.13 3.27 7.88 -2.91 -0.02 3.25 16 36 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -65.62 321.47 0.81 -64.81 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.32 Total: 13.14 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 4.83 Total: -7.11 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -7.20 Total: -119.64 kcal Atomic # 8 Polarization: 2.42 SS G_CDS: 0.84 Total: 3.26 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -65.62 0.81 -64.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.926 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds