Wall clock time and date at job start Mon Mar 30 2020 01:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38322 * 119.40780 * 2 1 4 4 C 1.38375 * 119.45766 * 180.02562 * 3 2 1 5 5 C 1.39984 * 118.34605 * 359.73125 * 4 3 2 6 6 C 1.43203 * 120.59896 * 180.28895 * 5 4 3 7 7 N 4.80304 * 135.07319 * 359.73912 * 3 1 2 8 8 C 1.40318 * 118.79936 * 0.52960 * 5 4 3 9 9 O 1.35478 * 119.80307 * 179.73541 * 8 5 4 10 10 C 1.42899 * 117.00500 * 179.72670 * 9 8 5 11 11 H 1.08998 * 110.88127 * 333.88093 * 10 9 8 12 12 C 1.55161 * 111.00389 * 210.00063 * 10 9 8 13 13 C 1.54323 * 102.93603 * 206.42273 * 12 10 9 14 14 N 1.47018 * 107.27391 * 22.19349 * 13 12 10 15 15 C 1.36939 * 125.64487 * 181.02127 * 14 13 12 16 16 H 1.08000 * 119.99581 * 189.83269 * 15 14 13 17 17 C 1.38805 * 120.00356 * 9.82904 * 15 14 13 18 18 N 1.31621 * 120.00209 * 208.93508 * 17 15 14 19 19 Si 1.86800 * 120.00028 * 28.93562 * 17 15 14 20 20 H 1.48503 * 109.47084 * 275.30206 * 19 17 15 21 21 H 1.48493 * 109.47453 * 155.29993 * 19 17 15 22 22 H 1.48503 * 109.46914 * 35.29834 * 19 17 15 23 23 C 1.47418 * 108.70509 * 1.28535 * 14 13 12 24 24 N 1.31913 * 119.40652 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47185 * 269.98047 * 1 2 3 26 26 H 1.09000 * 109.46781 * 29.97755 * 1 2 3 27 27 H 1.08999 * 109.47152 * 149.97135 * 1 2 3 28 28 H 1.08000 * 120.26812 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.82234 * 180.02562 * 4 3 2 30 30 H 1.09002 * 110.71740 * 88.06184 * 12 10 9 31 31 H 1.08992 * 110.86850 * 324.85565 * 12 10 9 32 32 H 1.09002 * 109.88212 * 262.76856 * 13 12 10 33 33 H 1.09000 * 109.87848 * 141.61041 * 13 12 10 34 34 H 0.96996 * 119.99849 * 4.81527 * 18 17 15 35 35 H 1.09002 * 110.36921 * 94.48294 * 23 14 13 36 36 H 1.09000 * 110.37005 * 216.80481 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.2050 0.0000 4 6 3.5699 1.2062 -0.0005 5 6 4.2356 -0.0252 0.0047 6 6 5.6666 -0.0802 0.0106 7 7 6.8016 -0.1240 0.0154 8 6 3.4754 -1.2046 -0.0011 9 8 4.0988 -2.4075 -0.0016 10 6 3.2669 -3.5694 -0.0016 11 1 2.2974 -3.3531 0.4472 12 6 3.9634 -4.7520 0.7222 13 6 3.3183 -5.9890 0.0624 14 7 2.7931 -5.5633 -1.2431 15 6 2.1272 -6.3619 -2.1343 16 1 1.9196 -6.0022 -3.1312 17 6 1.7190 -7.6336 -1.7563 18 7 1.6154 -8.5867 -2.6580 19 14 1.3165 -7.9922 0.0322 20 1 2.5656 -8.3236 0.7639 21 1 0.3789 -9.1412 0.1079 22 1 0.6852 -6.7968 0.6469 23 6 3.1076 -4.1362 -1.4368 24 7 2.1546 -1.1492 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5143 28 1 1.6409 2.1372 0.0004 29 1 4.1224 2.1341 -0.0001 30 1 3.7500 -4.7296 1.7909 31 1 5.0386 -4.7369 0.5446 32 1 2.5051 -6.3601 0.6861 33 1 4.0676 -6.7684 -0.0758 34 1 1.8907 -8.4205 -3.5731 35 1 4.0364 -4.0249 -1.9964 36 1 2.2898 -3.6342 -1.9538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225865806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:03 Heat of formation + Delta-G solvation = 62.603801 kcal Electronic energy + Delta-G solvation = -20390.454845 eV Core-core repulsion = 17262.466916 eV Total energy + Delta-G solvation = -3127.987929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03901 -38.79241 -36.81500 -36.57469 -33.36158 -32.61660 -31.86745 -29.67574 -28.59893 -27.83543 -24.42421 -23.30286 -23.20026 -21.01563 -20.38873 -19.41573 -18.21803 -17.48709 -16.86042 -15.89809 -15.34475 -15.09230 -14.77571 -14.17992 -13.98893 -13.71942 -13.52938 -13.33895 -13.26356 -13.02077 -12.90734 -12.56047 -12.44905 -12.25938 -12.17638 -11.75750 -11.33340 -11.10687 -10.65740 -10.48512 -10.25821 -10.04688 -9.85839 -9.59097 -9.19822 -8.63241 -8.47052 -7.12375 -6.39084 -3.20541 0.36921 0.97807 2.55374 2.81043 2.83522 3.42918 3.52008 3.60062 3.62934 3.70034 3.98389 4.36382 4.61711 4.64672 4.79525 4.96182 5.00117 5.02283 5.25415 5.28390 5.34526 5.41948 5.44896 5.59324 5.63146 5.70625 5.79134 5.92714 6.11295 6.13206 6.42311 6.46041 6.52055 6.71917 7.19307 7.38416 7.59711 7.66942 8.31487 8.99248 9.54357 10.20392 11.10269 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.004988 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.663593 B = 5612.097892 C = 6287.123184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.205 3.795 3 C -0.221 4.221 4 C 0.012 3.988 5 C -0.120 4.120 6 C 0.269 3.731 7 N -0.416 5.416 8 C 0.386 3.614 9 O -0.287 6.287 10 C 0.067 3.933 11 H 0.106 0.894 12 C -0.126 4.126 13 C 0.122 3.878 14 N -0.604 5.604 15 C -0.333 4.333 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.910 5.910 19 Si 1.052 2.948 20 H -0.292 1.292 21 H -0.297 1.297 22 H -0.292 1.292 23 C 0.127 3.873 24 N -0.533 5.533 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.033 0.967 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 21.375 8.111 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.066 3.934 3 C -0.242 4.242 4 C -0.016 4.016 5 C -0.126 4.126 6 C -0.047 4.047 7 N -0.092 5.092 8 C 0.203 3.797 9 O -0.191 6.191 10 C 0.010 3.990 11 H 0.124 0.876 12 C -0.164 4.164 13 C -0.003 4.003 14 N -0.332 5.332 15 C -0.459 4.459 16 H 0.097 0.903 17 C -0.212 4.212 18 N -0.549 5.549 19 Si 0.885 3.115 20 H -0.220 1.220 21 H -0.225 1.225 22 H -0.220 1.220 23 C 0.000 4.000 24 N -0.258 5.258 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.165 0.835 29 H 0.167 0.833 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.187 19.174 9.046 21.202 hybrid contribution 0.436 1.871 -1.002 2.167 sum 0.249 21.045 8.044 22.531 Atomic orbital electron populations 1.20889 0.87970 1.04407 1.03807 1.21305 0.97186 0.87048 0.87822 1.21709 0.93978 0.99524 1.08942 1.21439 0.94295 0.95845 0.89986 1.15867 0.85641 0.92749 1.18368 1.25050 0.91966 0.93988 0.93654 1.81217 1.11801 1.06863 1.09352 1.19772 0.87226 0.85804 0.86851 1.86279 1.35927 1.11946 1.84964 1.24077 0.94345 0.80844 0.99728 0.87575 1.22750 1.00958 0.93413 0.99287 1.21636 0.96295 0.94769 0.87598 1.44671 1.65966 1.04781 1.17817 1.20018 1.36094 0.96641 0.93183 0.90333 1.25761 0.98595 0.90931 1.05940 1.70894 1.48438 1.31108 1.04509 0.83997 0.76552 0.74575 0.76422 1.22031 1.22528 1.21970 1.21923 0.98987 0.86348 0.92710 1.67340 1.07370 1.30507 1.20557 0.89519 0.89967 0.89555 0.83547 0.83266 0.90632 0.90190 0.95109 0.93522 0.92514 0.94953 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.16 36.00 0.37 -0.42 16 2 C 0.20 1.98 6.78 -82.53 -0.56 1.42 16 3 C -0.22 -1.58 9.71 -39.50 -0.38 -1.96 16 4 C 0.01 0.09 9.90 -38.88 -0.39 -0.29 16 5 C -0.12 -1.40 5.77 -106.53 -0.61 -2.01 16 6 C 0.27 3.65 14.91 -22.47 -0.34 3.32 16 7 N -0.42 -6.46 18.54 41.83 0.78 -5.69 16 8 C 0.39 5.44 7.50 -16.61 -0.12 5.32 16 9 O -0.29 -4.74 9.36 -18.13 -0.17 -4.90 16 10 C 0.07 1.19 3.37 -24.46 -0.08 1.11 16 11 H 0.11 1.88 6.95 -51.93 -0.36 1.52 16 12 C -0.13 -2.23 6.68 -24.89 -0.17 -2.39 16 13 C 0.12 2.70 4.99 -3.07 -0.02 2.69 16 14 N -0.60 -15.14 3.28 -169.94 -0.56 -15.69 16 15 C -0.33 -9.61 10.41 -15.06 -0.16 -9.76 16 16 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 17 C -0.01 -0.32 5.41 -17.43 -0.09 -0.41 16 18 N -0.91 -28.40 13.70 55.49 0.76 -27.64 16 19 Si 1.05 26.50 24.74 -169.99 -4.21 22.29 16 20 H -0.29 -6.93 6.74 56.52 0.38 -6.55 16 21 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 22 H -0.29 -7.02 6.87 56.52 0.39 -6.63 16 23 C 0.13 2.69 6.97 -2.41 -0.02 2.67 16 24 N -0.53 -7.13 8.52 -9.20 -0.08 -7.20 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 29 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.03 0.71 3.71 -51.93 -0.19 0.52 16 33 H 0.05 1.07 8.01 -51.93 -0.42 0.66 16 34 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 309.92 15.07 4.67 4.67 Total: -1.00 -33.66 309.92 -5.75 -39.41 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -4.38 Total: -4.51 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.57 Total: -0.74 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.90 Total: -56.22 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.17 Total: -4.90 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -4.21 Total: 22.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.66 -5.75 -39.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225865806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.018 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds