Wall clock time and date at job start Mon Mar 30 2020 01:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38322 * 119.40780 * 2 1 4 4 C 1.38375 * 119.45766 * 180.02562 * 3 2 1 5 5 C 1.39984 * 118.34605 * 359.73125 * 4 3 2 6 6 C 1.43203 * 120.59896 * 180.28895 * 5 4 3 7 7 N 4.80304 * 135.07319 * 359.73912 * 3 1 2 8 8 C 1.40318 * 118.79936 * 0.52960 * 5 4 3 9 9 O 1.35478 * 119.80307 * 179.73541 * 8 5 4 10 10 C 1.42899 * 117.00500 * 179.72670 * 9 8 5 11 11 H 1.08998 * 110.88127 * 333.88093 * 10 9 8 12 12 C 1.55161 * 111.00389 * 210.00063 * 10 9 8 13 13 C 1.54323 * 102.93603 * 206.42273 * 12 10 9 14 14 N 1.47018 * 107.27391 * 22.19349 * 13 12 10 15 15 C 1.36939 * 125.64487 * 181.02127 * 14 13 12 16 16 H 1.08000 * 119.99581 * 189.83269 * 15 14 13 17 17 C 1.38805 * 120.00356 * 9.82904 * 15 14 13 18 18 N 1.31621 * 120.00209 * 208.93508 * 17 15 14 19 19 Si 1.86800 * 120.00028 * 28.93562 * 17 15 14 20 20 H 1.48503 * 109.47084 * 275.30206 * 19 17 15 21 21 H 1.48493 * 109.47453 * 155.29993 * 19 17 15 22 22 H 1.48503 * 109.46914 * 35.29834 * 19 17 15 23 23 C 1.47418 * 108.70509 * 1.28535 * 14 13 12 24 24 N 1.31913 * 119.40652 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47185 * 269.98047 * 1 2 3 26 26 H 1.09000 * 109.46781 * 29.97755 * 1 2 3 27 27 H 1.08999 * 109.47152 * 149.97135 * 1 2 3 28 28 H 1.08000 * 120.26812 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.82234 * 180.02562 * 4 3 2 30 30 H 1.09002 * 110.71740 * 88.06184 * 12 10 9 31 31 H 1.08992 * 110.86850 * 324.85565 * 12 10 9 32 32 H 1.09002 * 109.88212 * 262.76856 * 13 12 10 33 33 H 1.09000 * 109.87848 * 141.61041 * 13 12 10 34 34 H 0.96996 * 119.99849 * 4.81527 * 18 17 15 35 35 H 1.09002 * 110.36921 * 94.48294 * 23 14 13 36 36 H 1.09000 * 110.37005 * 216.80481 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.2050 0.0000 4 6 3.5699 1.2062 -0.0005 5 6 4.2356 -0.0252 0.0047 6 6 5.6666 -0.0802 0.0106 7 7 6.8016 -0.1240 0.0154 8 6 3.4754 -1.2046 -0.0011 9 8 4.0988 -2.4075 -0.0016 10 6 3.2669 -3.5694 -0.0016 11 1 2.2974 -3.3531 0.4472 12 6 3.9634 -4.7520 0.7222 13 6 3.3183 -5.9890 0.0624 14 7 2.7931 -5.5633 -1.2431 15 6 2.1272 -6.3619 -2.1343 16 1 1.9196 -6.0022 -3.1312 17 6 1.7190 -7.6336 -1.7563 18 7 1.6154 -8.5867 -2.6580 19 14 1.3165 -7.9922 0.0322 20 1 2.5656 -8.3236 0.7639 21 1 0.3789 -9.1412 0.1079 22 1 0.6852 -6.7968 0.6469 23 6 3.1076 -4.1362 -1.4368 24 7 2.1546 -1.1492 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5143 28 1 1.6409 2.1372 0.0004 29 1 4.1224 2.1341 -0.0001 30 1 3.7500 -4.7296 1.7909 31 1 5.0386 -4.7369 0.5446 32 1 2.5051 -6.3601 0.6861 33 1 4.0676 -6.7684 -0.0758 34 1 1.8907 -8.4205 -3.5731 35 1 4.0364 -4.0249 -1.9964 36 1 2.2898 -3.6342 -1.9538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225865806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:02 Heat of formation + Delta-G solvation = 38.379673 kcal Electronic energy + Delta-G solvation = -20391.505282 eV Core-core repulsion = 17262.466916 eV Total energy + Delta-G solvation = -3129.038366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.96528 -40.05852 -38.22089 -37.73563 -34.70038 -34.10092 -32.81196 -31.43722 -29.90623 -28.92482 -26.12768 -24.46510 -23.99719 -22.64226 -22.03685 -20.35362 -19.68391 -19.22434 -17.81777 -17.28678 -16.75772 -16.34259 -15.82335 -15.59452 -15.24854 -14.88391 -14.86810 -14.61381 -14.53546 -14.22786 -14.08686 -13.88204 -13.56263 -13.17068 -13.14042 -13.07050 -12.92152 -12.84497 -12.43409 -11.89236 -11.75819 -11.61169 -11.19748 -10.91519 -10.69392 -10.63560 -9.52239 -9.21681 -8.73587 -5.47339 -0.43870 0.23383 1.40803 1.51442 1.52307 1.70272 1.76034 1.87945 2.52930 2.70239 2.75893 2.93505 3.12126 3.36362 3.53301 3.69267 3.78244 3.81936 4.00103 4.15109 4.22658 4.34222 4.45205 4.64581 4.75702 4.76342 4.79923 4.84238 4.86649 4.97724 5.02047 5.07000 5.22625 5.48466 5.54306 6.02922 6.07529 6.39167 6.74653 6.77417 7.38451 8.04194 8.77426 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.004988 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.663593 B = 5612.097892 C = 6287.123184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.190 3.810 3 C -0.194 4.194 4 C 0.025 3.975 5 C -0.129 4.129 6 C 0.287 3.713 7 N -0.460 5.460 8 C 0.356 3.644 9 O -0.302 6.302 10 C 0.089 3.911 11 H 0.109 0.891 12 C -0.115 4.115 13 C 0.112 3.888 14 N -0.624 5.624 15 C -0.331 4.331 16 H 0.045 0.955 17 C -0.063 4.063 18 N -0.943 5.943 19 Si 1.096 2.904 20 H -0.267 1.267 21 H -0.302 1.302 22 H -0.272 1.272 23 C 0.126 3.874 24 N -0.564 5.564 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.063 0.937 28 H 0.194 0.806 29 H 0.188 0.812 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.251 0.749 35 H 0.023 0.977 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 24.654 10.601 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.053 3.947 3 C -0.214 4.214 4 C -0.001 4.001 5 C -0.136 4.136 6 C -0.028 4.028 7 N -0.137 5.137 8 C 0.175 3.825 9 O -0.207 6.207 10 C 0.032 3.968 11 H 0.127 0.873 12 C -0.153 4.153 13 C -0.012 4.012 14 N -0.353 5.353 15 C -0.458 4.458 16 H 0.063 0.937 17 C -0.259 4.259 18 N -0.585 5.585 19 Si 0.923 3.077 20 H -0.193 1.193 21 H -0.230 1.230 22 H -0.198 1.198 23 C 0.000 4.000 24 N -0.289 5.289 25 H 0.119 0.881 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.211 0.789 29 H 0.205 0.795 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.898 22.520 11.546 25.323 hybrid contribution 0.589 1.067 -1.900 2.257 sum -0.308 23.587 9.646 25.485 Atomic orbital electron populations 1.21002 0.86200 1.04899 1.04805 1.21938 0.98460 0.87072 0.87251 1.22204 0.93647 1.00235 1.05306 1.21942 0.94845 0.95571 0.87785 1.16062 0.84505 0.93487 1.19577 1.25366 0.92299 0.92735 0.92382 1.81228 1.13086 1.08238 1.11155 1.19962 0.88070 0.85293 0.89207 1.86235 1.35944 1.12439 1.86095 1.23556 0.94915 0.81831 0.96503 0.87334 1.22713 1.00912 0.90885 1.00794 1.21802 0.96168 0.96812 0.86394 1.44692 1.65709 1.06325 1.18532 1.19886 1.35808 0.97353 0.92794 0.93705 1.27028 0.98572 0.90936 1.09334 1.71003 1.51021 1.32202 1.04281 0.83428 0.77340 0.74983 0.71980 1.19324 1.22997 1.19810 1.21929 0.97900 0.84719 0.95477 1.67288 1.07125 1.32823 1.21615 0.88141 0.86727 0.91812 0.78910 0.79470 0.87071 0.89471 0.94813 0.94621 0.94019 0.95913 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.16 71.23 0.72 -0.47 16 2 C 0.19 3.06 6.78 42.57 0.29 3.35 16 3 C -0.19 -1.77 9.71 22.32 0.22 -1.56 16 4 C 0.03 0.29 9.90 22.73 0.23 0.52 16 5 C -0.13 -2.76 5.77 -21.10 -0.12 -2.88 16 6 C 0.29 7.44 14.91 88.33 1.32 8.76 16 7 N -0.46 -14.06 18.54 19.00 0.35 -13.71 16 8 C 0.36 9.61 7.50 85.14 0.64 10.25 16 9 O -0.30 -9.76 9.36 -87.77 -0.82 -10.59 16 10 C 0.09 3.11 3.37 32.06 0.11 3.22 16 11 H 0.11 3.73 6.95 -2.39 -0.02 3.72 16 12 C -0.12 -3.85 6.68 31.78 0.21 -3.64 16 13 C 0.11 4.87 4.99 86.73 0.43 5.30 16 14 N -0.62 -31.75 3.28 -691.58 -2.27 -34.02 16 15 C -0.33 -19.79 10.41 84.03 0.87 -18.91 16 16 H 0.04 2.90 8.06 -2.91 -0.02 2.87 16 17 C -0.06 -3.82 5.41 84.86 0.46 -3.36 16 18 N -0.94 -60.93 13.70 21.65 0.30 -60.63 16 19 Si 1.10 53.41 24.74 68.60 1.70 55.11 16 20 H -0.27 -11.85 6.74 99.48 0.67 -11.18 16 21 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 22 H -0.27 -12.24 6.87 99.48 0.68 -11.56 16 23 C 0.13 5.44 6.97 86.93 0.61 6.05 16 24 N -0.56 -14.19 8.52 -296.02 -2.52 -16.71 16 25 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.11 0.47 8.07 -2.39 -0.02 0.45 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.19 0.04 8.06 -2.91 -0.02 0.01 16 29 H 0.19 0.73 8.06 -2.91 -0.02 0.70 16 30 H 0.11 2.95 8.14 -2.39 -0.02 2.94 16 31 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.03 1.47 3.71 -2.39 -0.01 1.47 16 33 H 0.04 1.62 8.01 -2.39 -0.02 1.60 16 34 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 35 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -77.85 309.92 3.71 -74.13 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: 1.00 Total: -0.21 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.98 Total: 6.62 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -4.15 Total: -125.07 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.82 Total: -10.59 kcal Atomic # 14 Polarization: 53.41 SS G_CDS: 1.70 Total: 55.11 kcal Total: -77.85 3.71 -74.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225865806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.514 kcal (2) G-P(sol) polarization free energy of solvation -77.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds