Wall clock time and date at job start Mon Mar 30 2020 00:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00520 * 2 1 4 4 H 1.48509 * 109.47072 * 95.37321 * 3 2 1 5 5 H 1.48495 * 109.47523 * 215.37595 * 3 2 1 6 6 H 1.48503 * 109.46703 * 335.37799 * 3 2 1 7 7 C 1.38815 * 120.00045 * 180.27669 * 2 1 3 8 8 H 1.07998 * 119.99873 * 32.56548 * 7 2 1 9 9 N 1.36935 * 120.00238 * 212.57024 * 7 2 1 10 10 C 1.47018 * 125.64630 * 9.53832 * 9 7 2 11 11 C 1.54327 * 107.26804 * 181.02383 * 10 9 7 12 12 C 1.55156 * 102.94562 * 22.19199 * 11 10 9 13 13 H 1.09001 * 110.99894 * 82.57122 * 12 11 10 14 14 O 1.42896 * 111.00676 * 206.38443 * 12 11 10 15 15 C 1.35205 * 117.00143 * 203.76753 * 14 12 11 16 16 C 1.39990 * 120.68148 * 354.22922 * 15 14 12 17 17 C 1.35634 * 120.29765 * 179.97438 * 16 15 14 18 18 N 1.34572 * 121.82827 * 0.02562 * 17 16 15 19 19 H 0.97000 * 119.59250 * 180.02562 * 18 17 16 20 20 C 1.37602 * 120.82349 * 0.02562 * 18 17 16 21 21 N 1.32310 * 133.51495 * 180.02562 * 20 18 17 22 22 C 1.33377 * 110.61533 * 179.28903 * 21 20 18 23 23 C 1.35989 * 109.73765 * 0.57042 * 22 21 20 24 24 C 1.40183 * 120.68279 * 173.95364 * 15 14 12 25 25 C 1.47430 * 125.64661 * 189.23203 * 9 7 2 26 26 H 0.97007 * 120.00221 * 185.11618 * 1 2 3 27 27 H 1.08997 * 109.88927 * 300.43728 * 10 9 7 28 28 H 1.09001 * 109.88390 * 61.61352 * 10 9 7 29 29 H 1.09008 * 110.72045 * 140.55771 * 11 10 9 30 30 H 1.09007 * 110.72240 * 263.82961 * 11 10 9 31 31 H 1.08008 * 119.84775 * 0.02562 * 16 15 14 32 32 H 1.08005 * 119.08963 * 180.02562 * 17 16 15 33 33 H 1.08008 * 125.12815 * 180.02562 * 22 21 20 34 34 H 1.08006 * 126.84551 * 179.50279 * 23 22 21 35 35 H 1.08998 * 110.36441 * 274.74434 * 25 9 7 36 36 H 1.08993 * 110.36966 * 37.06985 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6114 1.9807 1.3940 5 1 3.4864 1.4755 -0.8105 6 1 1.3955 2.6827 -0.5833 7 6 2.0102 -1.2022 -0.0058 8 1 1.5976 -2.0615 -0.5134 9 7 3.2181 -1.2985 0.6321 10 6 3.8013 -0.2826 1.5205 11 6 5.1750 -0.8126 1.9828 12 6 5.5381 -1.8440 0.8821 13 1 5.9748 -1.3509 0.0136 14 8 6.4158 -2.8498 1.3919 15 6 7.1922 -3.4989 0.4953 16 6 7.0405 -3.2717 -0.8777 17 6 7.8239 -3.9268 -1.7703 18 7 8.7630 -4.8074 -1.3782 19 1 9.3056 -5.2574 -2.0445 20 6 8.9630 -5.0775 -0.0439 21 7 9.7922 -5.8747 0.6099 22 6 9.6044 -5.7699 1.9262 23 6 8.6064 -4.8813 2.1784 24 6 8.1696 -4.4088 0.9218 25 6 4.1460 -2.4410 0.5469 26 1 -0.4851 -0.8367 0.0749 27 1 3.9289 0.6545 0.9787 28 1 3.1536 -0.1291 2.3836 29 1 5.9087 -0.0070 2.0136 30 1 5.0935 -1.2988 2.9550 31 1 6.2967 -2.5711 -1.2277 32 1 7.6905 -3.7364 -2.8250 33 1 10.1555 -6.3156 2.6780 34 1 8.2244 -4.5942 3.1470 35 1 3.8737 -3.2059 1.2740 36 1 4.1446 -2.8565 -0.4607 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226100215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:00 Heat of formation + Delta-G solvation = 88.371265 kcal Electronic energy + Delta-G solvation = -20526.864851 eV Core-core repulsion = 17399.994284 eV Total energy + Delta-G solvation = -3126.870568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69695 -39.68070 -38.01771 -36.97053 -32.98015 -32.33751 -30.05361 -29.49813 -28.48910 -28.11139 -24.48239 -23.69780 -22.64455 -21.00874 -20.87827 -20.44953 -18.19116 -17.81622 -17.48878 -17.02727 -16.15087 -15.77221 -15.32934 -15.02213 -14.41511 -13.89945 -13.76133 -13.53735 -13.37068 -12.88491 -12.69843 -12.40697 -12.25579 -12.08513 -11.66110 -11.44277 -11.22037 -10.91284 -10.66577 -10.39307 -9.81048 -9.61575 -9.42353 -9.33906 -8.50893 -8.20972 -7.50297 -7.26911 -6.51422 -3.30785 0.28109 1.48305 2.38665 2.89464 3.34736 3.43118 3.46279 3.61278 3.62666 4.06560 4.52558 4.54102 4.66281 4.71864 4.80831 4.89079 5.06234 5.10435 5.17519 5.29140 5.40796 5.61512 5.69309 5.89668 6.00028 6.03324 6.08666 6.17797 6.25332 6.38423 6.44201 6.60692 6.62249 6.97160 7.19004 7.32105 7.53984 8.20745 8.24147 8.86943 9.43332 10.08497 10.96898 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.004286 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.431708 B = 6530.833704 C = 6802.828469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.005 4.005 3 Si 1.043 2.957 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.344 4.344 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.124 3.876 11 C -0.121 4.121 12 C 0.051 3.949 13 H 0.092 0.908 14 O -0.278 6.278 15 C 0.296 3.704 16 C -0.311 4.311 17 C 0.193 3.807 18 N -0.519 5.519 19 H 0.421 0.579 20 C 0.245 3.755 21 N -0.539 5.539 22 C 0.026 3.974 23 C -0.213 4.213 24 C -0.209 4.209 25 C 0.120 3.880 26 H 0.267 0.733 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.182 0.818 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.039 0.961 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.662 -5.406 -2.884 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.208 4.208 3 Si 0.875 3.125 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.470 4.470 8 H 0.097 0.903 9 N -0.331 5.331 10 C -0.001 4.001 11 C -0.159 4.159 12 C -0.005 4.005 13 H 0.110 0.890 14 O -0.185 6.185 15 C 0.240 3.760 16 C -0.337 4.337 17 C 0.052 3.948 18 N -0.118 5.118 19 H 0.258 0.742 20 C 0.001 3.999 21 N -0.259 5.259 22 C -0.118 4.118 23 C -0.236 4.236 24 C -0.217 4.217 25 C -0.006 4.006 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.180 0.820 32 H 0.199 0.801 33 H 0.172 0.828 34 H 0.148 0.852 35 H 0.057 0.943 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.071 -4.461 -3.048 17.906 hybrid contribution -0.281 -1.147 -0.013 1.181 sum 16.790 -5.608 -3.061 17.965 Atomic orbital electron populations 1.70895 1.06412 1.29625 1.46931 1.25745 0.95916 1.00626 0.98509 0.84113 0.74717 0.77245 0.76401 1.21818 1.22015 1.22308 1.19954 0.92810 0.99075 1.35141 0.90303 1.44673 1.19504 1.15958 1.53002 1.21623 0.91372 0.92794 0.94341 1.22716 0.97827 0.96967 0.98430 1.24309 0.90100 0.87849 0.98279 0.88982 1.86061 1.49039 1.48309 1.35056 1.19698 0.83654 0.84427 0.88244 1.20885 1.09479 1.11704 0.91645 1.21673 0.85934 0.86593 1.00583 1.40563 1.30209 1.34416 1.06580 0.74241 1.18813 0.98912 0.99799 0.82351 1.69577 1.26046 1.24327 1.05958 1.22115 0.98682 0.99838 0.91211 1.21291 1.02547 1.04155 0.95600 1.18485 1.01755 1.05261 0.96207 1.22077 0.86789 0.92159 0.99593 0.92283 0.95141 0.93337 0.90354 0.89743 0.81950 0.80103 0.82775 0.85155 0.94282 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.70 55.49 0.76 -26.25 16 2 C -0.01 -0.15 5.37 -17.43 -0.09 -0.24 16 3 Si 1.04 24.95 24.94 -169.99 -4.24 20.71 16 4 H -0.29 -6.53 6.70 56.52 0.38 -6.15 16 5 H -0.29 -6.61 7.05 56.52 0.40 -6.21 16 6 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.34 -9.36 10.36 -15.06 -0.16 -9.52 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 N -0.60 -13.96 3.28 -169.94 -0.56 -14.52 16 10 C 0.12 2.53 5.09 -3.06 -0.02 2.51 16 11 C -0.12 -1.93 6.68 -24.90 -0.17 -2.09 16 12 C 0.05 0.79 2.82 -24.46 -0.07 0.72 16 13 H 0.09 1.28 6.27 -51.93 -0.33 0.95 16 14 O -0.28 -4.31 9.94 -17.31 -0.17 -4.48 16 15 C 0.30 4.22 6.76 -38.20 -0.26 3.96 16 16 C -0.31 -3.33 8.89 -39.86 -0.35 -3.69 16 17 C 0.19 1.41 11.09 -17.28 -0.19 1.22 16 18 N -0.52 -4.69 5.31 -12.15 -0.06 -4.76 16 19 H 0.42 2.37 8.91 -40.82 -0.36 2.01 16 20 C 0.24 3.51 8.46 -155.44 -1.32 2.20 16 21 N -0.54 -8.69 11.20 -12.31 -0.14 -8.83 16 22 C 0.03 0.40 11.78 -17.69 -0.21 0.19 16 23 C -0.21 -3.37 11.00 -39.27 -0.43 -3.80 16 24 C -0.21 -3.26 6.21 -106.71 -0.66 -3.93 16 25 C 0.12 2.27 6.89 -2.41 -0.02 2.25 16 26 H 0.27 7.93 8.73 -40.82 -0.36 7.58 16 27 H 0.03 0.65 3.88 -51.93 -0.20 0.45 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.16 1.63 5.77 -52.48 -0.30 1.33 16 32 H 0.18 0.39 8.06 -52.48 -0.42 -0.03 16 33 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.13 1.91 8.06 -52.48 -0.42 1.48 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.92 7.83 -51.93 -0.41 0.52 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -34.91 296.84 -8.04 -42.94 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.16 Total: 0.90 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.94 Total: -10.21 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.00 Total: -54.35 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.17 Total: -4.48 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.24 Total: 20.71 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.91 -8.04 -42.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226100215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.315 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds