Wall clock time and date at job start Mon Mar 30 2020 00:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00520 * 2 1 4 4 H 1.48509 * 109.47072 * 95.37321 * 3 2 1 5 5 H 1.48495 * 109.47523 * 215.37595 * 3 2 1 6 6 H 1.48503 * 109.46703 * 335.37799 * 3 2 1 7 7 C 1.38815 * 120.00045 * 180.27669 * 2 1 3 8 8 H 1.07998 * 119.99873 * 32.56548 * 7 2 1 9 9 N 1.36935 * 120.00238 * 212.57024 * 7 2 1 10 10 C 1.47018 * 125.64630 * 9.53832 * 9 7 2 11 11 C 1.54327 * 107.26804 * 181.02383 * 10 9 7 12 12 C 1.55156 * 102.94562 * 22.19199 * 11 10 9 13 13 H 1.09001 * 110.99894 * 82.57122 * 12 11 10 14 14 O 1.42896 * 111.00676 * 206.38443 * 12 11 10 15 15 C 1.35205 * 117.00143 * 203.76753 * 14 12 11 16 16 C 1.39990 * 120.68148 * 354.22922 * 15 14 12 17 17 C 1.35634 * 120.29765 * 179.97438 * 16 15 14 18 18 N 1.34572 * 121.82827 * 0.02562 * 17 16 15 19 19 H 0.97000 * 119.59250 * 180.02562 * 18 17 16 20 20 C 1.37602 * 120.82349 * 0.02562 * 18 17 16 21 21 N 1.32310 * 133.51495 * 180.02562 * 20 18 17 22 22 C 1.33377 * 110.61533 * 179.28903 * 21 20 18 23 23 C 1.35989 * 109.73765 * 0.57042 * 22 21 20 24 24 C 1.40183 * 120.68279 * 173.95364 * 15 14 12 25 25 C 1.47430 * 125.64661 * 189.23203 * 9 7 2 26 26 H 0.97007 * 120.00221 * 185.11618 * 1 2 3 27 27 H 1.08997 * 109.88927 * 300.43728 * 10 9 7 28 28 H 1.09001 * 109.88390 * 61.61352 * 10 9 7 29 29 H 1.09008 * 110.72045 * 140.55771 * 11 10 9 30 30 H 1.09007 * 110.72240 * 263.82961 * 11 10 9 31 31 H 1.08008 * 119.84775 * 0.02562 * 16 15 14 32 32 H 1.08005 * 119.08963 * 180.02562 * 17 16 15 33 33 H 1.08008 * 125.12815 * 180.02562 * 22 21 20 34 34 H 1.08006 * 126.84551 * 179.50279 * 23 22 21 35 35 H 1.08998 * 110.36441 * 274.74434 * 25 9 7 36 36 H 1.08993 * 110.36966 * 37.06985 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6114 1.9807 1.3940 5 1 3.4864 1.4755 -0.8105 6 1 1.3955 2.6827 -0.5833 7 6 2.0102 -1.2022 -0.0058 8 1 1.5976 -2.0615 -0.5134 9 7 3.2181 -1.2985 0.6321 10 6 3.8013 -0.2826 1.5205 11 6 5.1750 -0.8126 1.9828 12 6 5.5381 -1.8440 0.8821 13 1 5.9748 -1.3509 0.0136 14 8 6.4158 -2.8498 1.3919 15 6 7.1922 -3.4989 0.4953 16 6 7.0405 -3.2717 -0.8777 17 6 7.8239 -3.9268 -1.7703 18 7 8.7630 -4.8074 -1.3782 19 1 9.3056 -5.2574 -2.0445 20 6 8.9630 -5.0775 -0.0439 21 7 9.7922 -5.8747 0.6099 22 6 9.6044 -5.7699 1.9262 23 6 8.6064 -4.8813 2.1784 24 6 8.1696 -4.4088 0.9218 25 6 4.1460 -2.4410 0.5469 26 1 -0.4851 -0.8367 0.0749 27 1 3.9289 0.6545 0.9787 28 1 3.1536 -0.1291 2.3836 29 1 5.9087 -0.0070 2.0136 30 1 5.0935 -1.2988 2.9550 31 1 6.2967 -2.5711 -1.2277 32 1 7.6905 -3.7364 -2.8250 33 1 10.1555 -6.3156 2.6780 34 1 8.2244 -4.5942 3.1470 35 1 3.8737 -3.2059 1.2740 36 1 4.1446 -2.8565 -0.4607 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226100215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:00 Heat of formation + Delta-G solvation = 63.498939 kcal Electronic energy + Delta-G solvation = -20527.943397 eV Core-core repulsion = 17399.994284 eV Total energy + Delta-G solvation = -3127.949113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.66800 -40.87284 -38.98361 -38.40811 -34.72314 -33.54991 -31.53161 -30.70782 -29.53800 -29.52491 -26.13452 -24.75265 -23.75357 -22.53737 -21.98862 -21.77601 -19.63983 -19.20023 -18.50992 -18.18408 -17.32289 -16.96414 -16.57667 -16.29903 -15.81599 -15.26575 -15.22183 -14.86139 -14.74386 -14.18191 -13.87237 -13.51165 -13.35768 -13.34000 -13.10464 -13.05199 -12.74090 -12.39106 -12.07888 -11.85390 -11.61113 -11.23152 -10.64719 -10.54450 -10.53931 -9.24285 -9.18652 -8.71737 -8.58403 -5.42652 -0.61471 0.62126 1.45236 1.54757 1.61782 1.72179 1.78174 2.38520 2.57085 2.58494 2.92716 3.33097 3.38254 3.51057 3.66183 3.74464 3.81177 3.92202 3.97274 4.19309 4.30122 4.40418 4.50100 4.66795 4.82123 4.83535 4.87450 4.94905 5.04178 5.09681 5.16822 5.33701 5.55719 5.82615 5.95664 6.06562 6.15496 6.29925 6.76710 7.18282 7.42894 8.07293 8.78464 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.004286 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.431708 B = 6530.833704 C = 6802.828469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.061 4.061 3 Si 1.088 2.912 4 H -0.269 1.269 5 H -0.264 1.264 6 H -0.306 1.306 7 C -0.335 4.335 8 H 0.047 0.953 9 N -0.622 5.622 10 C 0.114 3.886 11 C -0.113 4.113 12 C 0.070 3.930 13 H 0.120 0.880 14 O -0.292 6.292 15 C 0.282 3.718 16 C -0.328 4.328 17 C 0.236 3.764 18 N -0.503 5.503 19 H 0.441 0.559 20 C 0.233 3.767 21 N -0.565 5.565 22 C 0.008 3.992 23 C -0.240 4.240 24 C -0.243 4.243 25 C 0.117 3.883 26 H 0.252 0.748 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.176 0.824 32 H 0.250 0.750 33 H 0.170 0.830 34 H 0.128 0.872 35 H 0.023 0.977 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.229 -4.385 -4.893 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.257 4.257 3 Si 0.914 3.086 4 H -0.195 1.195 5 H -0.190 1.190 6 H -0.234 1.234 7 C -0.463 4.463 8 H 0.065 0.935 9 N -0.351 5.351 10 C -0.010 4.010 11 C -0.151 4.151 12 C 0.014 3.986 13 H 0.137 0.863 14 O -0.199 6.199 15 C 0.226 3.774 16 C -0.352 4.352 17 C 0.093 3.907 18 N -0.102 5.102 19 H 0.281 0.719 20 C -0.010 4.010 21 N -0.286 5.286 22 C -0.137 4.137 23 C -0.263 4.263 24 C -0.252 4.252 25 C -0.009 4.009 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.193 0.807 32 H 0.265 0.735 33 H 0.187 0.813 34 H 0.146 0.854 35 H 0.041 0.959 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.708 -3.489 -5.060 20.644 hybrid contribution -1.119 -1.602 0.509 2.020 sum 18.588 -5.092 -4.551 19.803 Atomic orbital electron populations 1.71013 1.07725 1.28759 1.50581 1.26981 0.95861 1.04223 0.98639 0.83547 0.74316 0.72818 0.77903 1.19535 1.18969 1.23441 1.19820 0.94520 0.97903 1.34045 0.93476 1.44663 1.19415 1.17832 1.53181 1.21768 0.93416 0.92625 0.93185 1.22687 0.95855 0.98113 0.98436 1.24016 0.88239 0.87328 0.99020 0.86286 1.86035 1.49272 1.48706 1.35880 1.19974 0.83395 0.84377 0.89662 1.21142 1.10847 1.12932 0.90300 1.22719 0.82358 0.82739 1.02860 1.40755 1.30294 1.34081 1.05090 0.71883 1.18994 0.98340 0.99345 0.84286 1.69536 1.27220 1.25548 1.06327 1.22412 0.99159 1.00363 0.91729 1.21449 1.03494 1.05249 0.96125 1.18708 1.03226 1.06692 0.96542 1.22120 0.88401 0.90662 0.99720 0.93908 0.94644 0.95111 0.86760 0.89530 0.80698 0.73455 0.81302 0.85441 0.95931 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.05 13.70 21.65 0.30 -57.76 16 2 C -0.06 -3.45 5.37 84.86 0.46 -2.99 16 3 Si 1.09 49.39 24.94 68.60 1.71 51.10 16 4 H -0.27 -11.18 6.70 99.48 0.67 -10.51 16 5 H -0.26 -10.68 7.05 99.48 0.70 -9.98 16 6 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 7 C -0.34 -18.49 10.36 84.03 0.87 -17.62 16 8 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 9 N -0.62 -28.26 3.28 -691.56 -2.27 -30.53 16 10 C 0.11 4.44 5.09 86.73 0.44 4.88 16 11 C -0.11 -3.24 6.68 31.78 0.21 -3.03 16 12 C 0.07 1.97 2.82 32.06 0.09 2.06 16 13 H 0.12 2.73 6.27 -2.39 -0.01 2.72 16 14 O -0.29 -8.49 9.94 -84.86 -0.84 -9.34 16 15 C 0.28 7.41 6.76 23.17 0.16 7.57 16 16 C -0.33 -5.57 8.89 22.09 0.20 -5.37 16 17 C 0.24 2.06 11.09 83.67 0.93 2.99 16 18 N -0.50 -6.96 5.31 -192.36 -1.02 -7.98 16 19 H 0.44 2.88 8.91 -92.71 -0.83 2.06 16 20 C 0.23 6.29 8.46 134.21 1.14 7.43 16 21 N -0.57 -17.97 11.20 -192.87 -2.16 -20.13 16 22 C 0.01 0.24 11.78 83.94 0.99 1.23 16 23 C -0.24 -7.78 11.00 22.47 0.25 -7.53 16 24 C -0.24 -7.42 6.21 -21.22 -0.13 -7.55 16 25 C 0.12 4.25 6.89 86.93 0.60 4.85 16 26 H 0.25 15.71 8.73 -92.70 -0.81 14.90 16 27 H 0.04 1.37 3.88 -2.39 -0.01 1.36 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.18 2.59 5.77 -2.91 -0.02 2.57 16 32 H 0.25 -1.09 8.06 -2.91 -0.02 -1.12 16 33 H 0.17 4.36 8.06 -2.91 -0.02 4.33 16 34 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 2.07 7.83 -2.39 -0.02 2.05 16 Total: -1.00 -81.32 296.84 2.11 -79.21 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.21 Total: 8.52 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 6.19 Total: -13.09 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -5.15 Total: -116.40 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.84 Total: -9.34 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 1.71 Total: 51.10 kcal Total: -81.32 2.11 -79.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226100215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.707 kcal (2) G-P(sol) polarization free energy of solvation -81.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds