Wall clock time and date at job start Mon Mar 30 2020 01:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38412 * 120.83151 * 2 1 4 4 C 1.38284 * 119.46508 * 179.97438 * 3 2 1 5 5 N 1.31939 * 121.18567 * 359.74338 * 4 3 2 6 6 C 1.32175 * 121.80563 * 0.52740 * 5 4 3 7 7 O 1.35486 * 119.79446 * 179.75290 * 6 5 4 8 8 C 1.42895 * 117.00530 * 359.72514 * 7 6 5 9 9 C 1.53514 * 114.17121 * 210.00115 * 8 7 6 10 10 N 1.47483 * 87.92777 * 220.32774 * 9 8 7 11 11 C 1.46903 * 110.99717 * 138.70421 * 10 9 8 12 12 C 1.50694 * 109.47066 * 169.99804 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47480 * 87.83900 * 27.00973 * 10 9 8 21 21 C 1.39948 * 120.82859 * 179.97438 * 2 1 3 22 22 C 1.43204 * 120.59894 * 359.97438 * 21 2 1 23 23 N 3.49458 * 81.59030 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47361 * 270.02327 * 1 2 3 25 25 H 1.09003 * 109.47069 * 30.02100 * 1 2 3 26 26 H 1.08997 * 109.47143 * 150.02104 * 1 2 3 27 27 H 1.08005 * 120.26891 * 359.95992 * 3 2 1 28 28 H 1.07990 * 119.40693 * 180.02562 * 4 3 2 29 29 H 1.09011 * 113.25486 * 342.95198 * 8 7 6 30 30 H 1.09000 * 113.47331 * 105.56452 * 9 8 7 31 31 H 1.08997 * 113.47627 * 335.09577 * 9 8 7 32 32 H 1.09007 * 109.47052 * 49.99488 * 11 10 9 33 33 H 1.09003 * 109.46808 * 290.00181 * 11 10 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 35 35 H 1.09004 * 113.47132 * 87.75237 * 20 10 9 36 36 H 1.09000 * 113.47538 * 218.21976 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2163 1.1885 0.0000 4 6 3.5988 1.1555 0.0005 5 7 4.2549 0.0109 0.0061 6 6 3.6268 -1.1521 0.0011 7 8 4.3413 -2.3032 0.0021 8 6 5.7652 -2.1830 0.0025 9 6 6.4939 -3.3391 -0.6968 10 7 7.4963 -3.2903 0.3840 11 6 7.8826 -4.6435 0.8052 12 6 9.0730 -4.5625 1.7257 13 1 9.5001 -3.6019 1.9728 14 6 9.6175 -5.7149 2.2516 15 7 9.0976 -6.8848 1.9503 16 14 11.0935 -5.6145 3.3921 17 1 12.3427 -5.6854 2.5924 18 1 11.0558 -4.3313 4.1387 19 1 11.0552 -6.7470 4.3520 20 6 6.4430 -2.7445 1.2603 21 6 2.2241 -1.2017 0.0005 22 6 1.5392 -2.4594 0.0017 23 7 0.9959 -3.4570 0.0015 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6944 2.1341 -0.0007 28 1 4.1513 2.0834 0.0010 29 1 6.1137 -1.1928 -0.2916 30 1 6.8957 -3.0713 -1.6740 31 1 5.9204 -4.2658 -0.7156 32 1 8.1411 -5.2371 -0.0718 33 1 7.0496 -5.1128 1.3287 34 1 9.4809 -7.6956 2.3200 35 1 5.8559 -3.5126 1.7637 36 1 6.8016 -1.9729 1.9416 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228309517.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:28 Heat of formation + Delta-G solvation = 43.819821 kcal Electronic energy + Delta-G solvation = -19762.217380 eV Core-core repulsion = 16633.414916 eV Total energy + Delta-G solvation = -3128.802463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.07549 -40.91537 -38.50962 -37.75775 -35.08393 -34.84354 -32.15267 -30.98091 -29.10958 -27.33997 -26.95008 -25.39636 -24.26935 -22.71671 -21.19975 -19.92965 -19.34903 -18.56517 -18.11061 -17.03501 -16.88663 -16.39851 -16.11872 -15.64064 -15.57191 -14.86785 -14.74493 -14.27750 -14.21691 -14.10933 -14.05802 -13.80393 -13.72223 -13.45649 -13.43867 -13.11005 -12.86472 -12.74630 -12.44977 -12.24524 -11.80123 -11.46796 -11.27717 -10.73023 -10.65125 -10.60601 -9.87163 -9.57937 -8.26674 -6.38088 -0.41239 0.19415 1.38879 1.41339 1.50993 1.52869 1.75858 1.89625 2.37572 2.73413 2.75954 3.05431 3.17479 3.30153 3.32340 3.61168 3.78673 3.98936 4.08256 4.26373 4.36750 4.40193 4.52573 4.59009 4.67286 4.73429 4.78174 4.79730 4.84265 4.98227 5.14343 5.21924 5.47600 5.50281 5.67148 5.97311 6.08621 6.30063 6.37276 6.75791 6.76882 7.31737 8.85046 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031368 B = 0.003517 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.415386 B = 7958.425098 C = 8419.618617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.046 3.954 3 C -0.196 4.196 4 C 0.177 3.823 5 N -0.559 5.559 6 C 0.356 3.644 7 O -0.310 6.310 8 C 0.083 3.917 9 C -0.006 4.006 10 N -0.468 5.468 11 C 0.175 3.825 12 C -0.528 4.528 13 H 0.064 0.936 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.976 3.024 17 H -0.270 1.270 18 H -0.262 1.262 19 H -0.281 1.281 20 C -0.004 4.004 21 C -0.135 4.135 22 C 0.284 3.716 23 N -0.462 5.462 24 H 0.098 0.902 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.194 0.806 28 H 0.208 0.792 29 H 0.149 0.851 30 H 0.108 0.892 31 H 0.056 0.944 32 H 0.005 0.995 33 H -0.023 1.023 34 H 0.266 0.734 35 H 0.051 0.949 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.565 22.761 -4.700 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.036 3.964 3 C -0.215 4.215 4 C 0.022 3.978 5 N -0.283 5.283 6 C 0.175 3.825 7 O -0.215 6.215 8 C 0.027 3.973 9 C -0.135 4.135 10 N -0.192 5.192 11 C 0.048 3.952 12 C -0.566 4.566 13 H 0.082 0.918 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.800 3.200 17 H -0.195 1.195 18 H -0.187 1.187 19 H -0.206 1.206 20 C -0.133 4.133 21 C -0.142 4.142 22 C -0.031 4.031 23 N -0.139 5.139 24 H 0.116 0.884 25 H 0.136 0.864 26 H 0.075 0.925 27 H 0.212 0.788 28 H 0.224 0.776 29 H 0.166 0.834 30 H 0.127 0.873 31 H 0.074 0.926 32 H 0.024 0.976 33 H -0.006 1.006 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.897 21.048 -4.750 26.801 hybrid contribution -0.328 -1.254 0.690 1.469 sum -16.225 19.794 -4.059 25.914 Atomic orbital electron populations 1.21070 0.87375 1.04916 1.04724 1.20584 0.98005 0.89684 0.88133 1.22310 0.94646 0.99315 1.05245 1.23529 0.92849 0.94966 0.86497 1.67459 1.41310 0.98305 1.21243 1.19946 0.87433 0.85976 0.89116 1.86328 1.21453 1.27989 1.85728 1.24211 0.75139 1.01373 0.96582 1.24181 0.92913 0.97454 0.98961 1.68917 1.23564 1.21617 1.05120 1.19956 0.95189 0.85344 0.94672 1.21409 1.13906 0.93394 1.27883 0.91753 1.26021 1.00784 0.94666 0.98453 1.70095 1.42954 0.98456 1.46135 0.85277 0.78522 0.78051 0.78145 1.19500 1.18655 1.20644 1.24229 0.92460 0.99673 0.96931 1.16069 0.89132 0.88630 1.20364 1.25472 0.92510 0.92579 0.92496 1.81232 1.10575 1.11052 1.11086 0.88353 0.86374 0.92487 0.78839 0.77571 0.83397 0.87339 0.92568 0.97644 1.00562 0.92524 0.93081 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.68 71.23 0.69 -0.28 16 2 C 0.05 0.58 5.95 -19.41 -0.12 0.47 16 3 C -0.20 -1.38 9.79 22.32 0.22 -1.16 16 4 C 0.18 1.92 11.16 84.69 0.95 2.87 16 5 N -0.56 -11.78 8.58 -307.96 -2.64 -14.43 16 6 C 0.36 9.26 7.50 85.16 0.64 9.90 16 7 O -0.31 -10.17 9.61 -87.86 -0.84 -11.02 16 8 C 0.08 2.77 4.53 30.94 0.14 2.91 16 9 C -0.01 -0.23 7.52 83.58 0.63 0.40 16 10 N -0.47 -21.39 6.32 -932.85 -5.89 -27.28 16 11 C 0.18 9.84 4.57 85.55 0.39 10.23 16 12 C -0.53 -31.27 9.39 25.60 0.24 -31.03 16 13 H 0.06 3.73 7.81 -2.91 -0.02 3.71 16 14 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 15 N -0.94 -58.17 13.29 21.45 0.28 -57.89 16 16 Si 0.98 45.35 29.54 68.60 2.03 47.37 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 C 0.00 -0.14 7.55 83.58 0.63 0.49 16 21 C -0.14 -3.03 5.77 -21.10 -0.12 -3.15 16 22 C 0.28 8.02 13.51 88.33 1.19 9.22 16 23 N -0.46 -15.31 18.54 19.01 0.35 -14.95 16 24 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.12 0.15 8.10 -2.39 -0.02 0.13 16 26 H 0.06 0.67 7.19 -2.39 -0.02 0.66 16 27 H 0.19 -0.37 8.06 -2.91 -0.02 -0.39 16 28 H 0.21 0.56 8.06 -2.92 -0.02 0.54 16 29 H 0.15 4.36 6.87 -2.38 -0.02 4.34 16 30 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 31 H 0.06 2.29 7.91 -2.39 -0.02 2.27 16 32 H 0.01 0.33 8.08 -2.38 -0.02 0.31 16 33 H -0.02 -1.42 7.30 -2.39 -0.02 -1.44 16 34 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.05 2.25 7.42 -2.39 -0.02 2.23 16 36 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -76.82 319.11 0.32 -76.49 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: 1.10 Total: 0.45 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.94 Total: 1.25 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -7.90 Total: -114.54 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.84 Total: -11.02 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -76.82 0.32 -76.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228309517.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.311 kcal (2) G-P(sol) polarization free energy of solvation -76.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds