Wall clock time and date at job start Mon Mar 30 2020 00:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00262 * 2 1 4 4 H 1.48507 * 109.47036 * 274.99250 * 3 2 1 5 5 H 1.48494 * 109.46886 * 34.98874 * 3 2 1 6 6 H 1.48494 * 109.47037 * 154.99031 * 3 2 1 7 7 C 1.38816 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99900 * 186.84379 * 7 2 1 9 9 N 1.36942 * 119.99874 * 6.84240 * 7 2 1 10 10 C 1.47016 * 125.64802 * 353.97887 * 9 7 2 11 11 C 1.54330 * 107.27172 * 181.02356 * 10 9 7 12 12 C 1.55161 * 102.93782 * 22.19531 * 11 10 9 13 13 H 1.09003 * 111.00318 * 82.56940 * 12 11 10 14 14 O 1.42901 * 111.03471 * 206.40493 * 12 11 10 15 15 C 1.35611 * 116.99677 * 206.79607 * 14 12 11 16 16 N 1.32152 * 120.06717 * 359.73183 * 15 14 12 17 17 C 1.32396 * 122.13496 * 179.70444 * 16 15 14 18 18 C 1.36589 * 121.72343 * 0.57417 * 17 16 15 19 19 C 1.39540 * 119.09861 * 359.72156 * 18 17 16 20 20 N 1.37035 * 134.59102 * 179.97438 * 19 18 17 21 21 H 0.97003 * 125.04645 * 0.02562 * 20 19 18 22 22 C 1.37028 * 109.90243 * 180.02562 * 20 19 18 23 23 C 1.34288 * 109.87719 * 0.02562 * 22 20 19 24 24 C 1.39933 * 120.05908 * 180.02562 * 15 14 12 25 25 C 1.47422 * 125.64773 * 173.94388 * 9 7 2 26 26 H 0.97006 * 119.99701 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.88664 * 300.44541 * 10 9 7 28 28 H 1.09008 * 109.88497 * 61.45671 * 10 9 7 29 29 H 1.08991 * 110.72022 * 263.83179 * 11 10 9 30 30 H 1.09004 * 110.71866 * 140.55343 * 11 10 9 31 31 H 1.07994 * 119.14096 * 180.29777 * 17 16 15 32 32 H 1.07993 * 120.44552 * 179.69782 * 18 17 16 33 33 H 1.07995 * 125.06252 * 179.97438 * 22 20 19 34 34 H 1.08000 * 126.53689 * 179.97438 * 23 22 20 35 35 H 1.09002 * 110.36880 * 37.06001 * 25 9 7 36 36 H 1.09001 * 110.45854 * 274.79459 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6198 0.8028 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0844 -1.2056 0.1109 9 7 1.3328 -2.3838 -0.1424 10 6 -0.1293 -2.5344 -0.1772 11 6 -0.4314 -4.0407 -0.3246 12 6 0.8656 -4.7085 0.2039 13 1 0.8571 -4.7715 1.2921 14 8 1.0524 -5.9994 -0.3797 15 6 1.7624 -6.9034 0.3398 16 7 2.2508 -6.5720 1.5222 17 6 2.9445 -7.4235 2.2615 18 6 3.2060 -8.6953 1.8374 19 6 2.7241 -9.1089 0.5949 20 7 2.7936 -10.2728 -0.1251 21 1 3.2464 -11.0805 0.1641 22 6 2.1285 -10.1263 -1.3141 23 6 1.6173 -8.8876 -1.4017 24 6 1.9844 -8.1871 -0.1710 25 6 1.9487 -3.7155 -0.2861 26 1 -0.4850 0.8401 0.0004 27 1 -0.5629 -2.1583 0.7494 28 1 -0.5382 -1.9872 -1.0266 29 1 -0.6001 -4.2996 -1.3698 30 1 -1.2879 -4.3239 0.2872 31 1 3.3172 -7.1028 3.2230 32 1 3.7782 -9.3714 2.4552 33 1 2.0308 -10.8925 -2.0689 34 1 1.0445 -8.4851 -2.2240 35 1 2.8409 -3.7899 0.3356 36 1 2.1972 -3.9096 -1.3295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230688437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:41 Heat of formation + Delta-G solvation = 43.058433 kcal Electronic energy + Delta-G solvation = -20373.760355 eV Core-core repulsion = 17244.924876 eV Total energy + Delta-G solvation = -3128.835480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.51056 -40.56407 -38.83415 -37.59552 -34.34133 -32.59639 -31.58830 -31.17179 -29.75543 -28.93465 -26.55822 -24.38985 -23.77903 -22.17028 -21.79595 -21.53297 -19.93677 -19.06024 -18.50859 -17.02460 -16.73343 -16.69143 -16.29806 -15.93378 -15.78909 -15.40756 -15.09814 -14.47778 -14.18743 -14.05197 -13.90461 -13.74215 -13.58068 -13.17448 -12.91561 -12.71634 -12.56442 -12.17281 -12.02170 -11.89884 -11.64520 -11.52949 -10.72341 -10.54770 -10.42900 -9.82852 -8.96169 -8.58592 -7.88557 -5.25141 0.08607 0.56019 1.46060 1.48962 1.58046 1.76095 1.92651 2.24121 2.50131 2.92801 3.29906 3.39722 3.65796 3.78571 3.93685 3.95649 4.02148 4.13565 4.19844 4.29530 4.55924 4.64553 4.67790 4.72012 4.83549 4.92993 4.98884 5.01565 5.13905 5.40779 5.46369 5.58219 5.60707 5.67934 5.89335 6.14144 6.39081 6.67314 7.05782 7.10543 7.70142 8.35886 9.22663 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035811 B = 0.003937 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.693533 B = 7109.769830 C = 7436.171246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.984 3.016 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.251 4.251 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.188 3.812 11 C -0.124 4.124 12 C 0.095 3.905 13 H 0.088 0.912 14 O -0.300 6.300 15 C 0.352 3.648 16 N -0.588 5.588 17 C 0.120 3.880 18 C -0.207 4.207 19 C 0.143 3.857 20 N -0.569 5.569 21 H 0.439 0.561 22 C 0.064 3.936 23 C -0.204 4.204 24 C -0.209 4.209 25 C 0.129 3.871 26 H 0.250 0.750 27 H 0.018 0.982 28 H 0.023 0.977 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.223 0.777 34 H 0.151 0.849 35 H 0.037 0.963 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.113 -25.140 0.533 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.811 3.189 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.063 3.937 11 C -0.162 4.162 12 C 0.037 3.963 13 H 0.106 0.894 14 O -0.205 6.205 15 C 0.167 3.833 16 N -0.316 5.316 17 C -0.028 4.028 18 C -0.230 4.230 19 C 0.026 3.974 20 N -0.174 5.174 21 H 0.280 0.720 22 C -0.061 4.061 23 C -0.230 4.230 24 C -0.217 4.217 25 C 0.003 3.997 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.198 0.802 32 H 0.187 0.813 33 H 0.239 0.761 34 H 0.169 0.831 35 H 0.056 0.944 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.878 -24.278 0.646 24.772 hybrid contribution 0.544 0.428 -0.032 0.693 sum 5.422 -23.850 0.614 24.466 Atomic orbital electron populations 1.70174 1.06335 1.25642 1.57461 1.25714 0.96707 1.01048 1.01894 0.84995 0.77783 0.78716 0.77423 1.21173 1.21633 1.19299 1.19449 0.91615 0.83603 1.43297 0.90218 1.44610 1.02540 1.01778 1.86094 1.20938 0.83726 0.90376 0.98633 1.22901 0.95988 0.95048 1.02306 1.23281 0.96090 0.78743 0.98150 0.89385 1.86202 1.67263 1.22576 1.44492 1.19629 0.88975 0.86826 0.87920 1.67346 1.18119 1.39012 1.07088 1.22210 0.92844 0.89005 0.98706 1.20883 1.08104 0.98695 0.95309 1.18220 0.98016 0.87233 0.93941 1.41704 1.47726 1.12083 1.15847 0.72009 1.22532 0.95950 0.98510 0.89114 1.21874 1.08493 0.94752 0.97851 1.19376 1.09283 0.92714 1.00370 1.21807 0.95142 0.85356 0.97383 0.94042 0.96342 0.95925 0.90144 0.89044 0.80197 0.81288 0.76086 0.83102 0.94447 0.96128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.57 10.36 21.65 0.22 -58.35 16 2 C -0.06 -3.56 5.48 84.86 0.47 -3.10 16 3 Si 0.98 47.19 29.56 68.60 2.03 49.21 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.25 -15.02 10.26 84.03 0.86 -14.16 16 8 H 0.08 4.60 7.84 -2.91 -0.02 4.58 16 9 N -0.62 -35.08 3.39 -692.00 -2.35 -37.43 16 10 C 0.19 9.97 5.38 86.73 0.47 10.43 16 11 C -0.12 -5.18 6.69 31.79 0.21 -4.97 16 12 C 0.09 4.02 3.29 31.98 0.11 4.12 16 13 H 0.09 3.86 7.08 -2.39 -0.02 3.85 16 14 O -0.30 -11.78 9.94 -89.23 -0.89 -12.67 16 15 C 0.35 12.62 7.53 85.06 0.64 13.26 16 16 N -0.59 -20.55 8.70 -309.17 -2.69 -23.24 16 17 C 0.12 3.09 11.08 84.22 0.93 4.02 16 18 C -0.21 -4.14 10.09 22.20 0.22 -3.91 16 19 C 0.14 3.16 7.34 39.28 0.29 3.44 16 20 N -0.57 -7.53 6.05 -187.45 -1.13 -8.66 16 21 H 0.44 2.16 8.96 -92.71 -0.83 1.32 16 22 C 0.06 0.86 11.83 82.98 0.98 1.84 16 23 C -0.20 -4.65 11.08 23.46 0.26 -4.39 16 24 C -0.21 -6.17 6.36 -20.14 -0.13 -6.29 16 25 C 0.13 6.26 6.97 86.85 0.61 6.86 16 26 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 27 H 0.02 1.06 7.54 -2.39 -0.02 1.04 16 28 H 0.02 1.31 7.36 -2.38 -0.02 1.29 16 29 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 31 H 0.18 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.22 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -77.86 304.60 1.38 -76.48 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.27 Total: 7.49 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 5.92 Total: 7.16 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -5.95 Total: -127.68 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.89 Total: -12.67 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -77.86 1.38 -76.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230688437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.540 kcal (2) G-P(sol) polarization free energy of solvation -77.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds